genome.fa.s1.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  110  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34641146--34641174	14	2.0	15	93	6	51	31	13	0	55	1.39
34642841--34642884	5	8.8	5	90	9	72	81	0	0	18	0.68
34644185--34644224	16	2.5	16	83	0	53	37	5	0	57	1.21
34646149--34646198	24	2.0	25	96	3	93	46	8	24	22	1.78
34648223--34648261	18	2.1	19	86	13	55	51	0	2	46	1.14
34651366--34651417	15	3.2	15	73	19	50	46	0	0	53	1.00
34651379--34651415	19	1.9	19	88	0	56	51	0	0	48	1.00
34651432--34651472	13	2.9	14	77	22	50	41	0	0	58	0.98
34651432--34651468	15	2.3	17	86	13	60	37	0	0	62	0.96
34651454--34651489	18	1.9	18	88	5	54	58	0	0	41	0.98
34651500--34651530	16	1.9	16	93	0	53	48	0	0	51	1.00
34652082--34652168	12	6.9	13	76	17	53	52	1	2	43	1.21
34652085--34652168	26	3.4	25	79	11	91	52	1	2	44	1.21
34652094--34652236	63	2.3	63	83	7	173	54	2	1	41	1.21
34655771--34655809	19	2.1	19	100	0	78	35	0	23	41	1.55
34661399--34661885	47	10.1	47	86	6	641	31	12	29	26	1.93
34661473--34661548	24	3.2	24	62	23	61	28	13	32	25	1.93
34661399--34661885	98	5.0	98	89	3	738	31	12	29	26	1.93
34661695--34661769	23	3.2	23	62	23	57	29	10	32	28	1.90
34661859--34661949	46	2.0	46	84	0	119	32	9	31	25	1.89
34661399--34661894	147	3.4	140	83	7	481	31	12	29	26	1.93
34662096--34662204	37	2.9	37	94	0	182	23	19	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34671264--34671346	39	2.3	36	86	12	116	51	18	14	15	1.76
34671275--34671354	39	2.0	40	95	2	144	50	20	13	16	1.78
34685432--34685538	28	3.8	28	93	0	169	28	25	11	34	1.90
34691777--34691809	16	2.1	16	88	11	50	30	6	15	48	1.69
34696732--34696780	24	2.0	24	100	0	98	28	8	20	42	1.80
34704017--34704057	21	1.9	22	90	5	66	31	2	9	56	1.45
34709427--34709453	13	2.1	13	100	0	54	22	25	7	44	1.79
34711301--34711358	30	1.9	30	92	0	98	31	31	10	27	1.90
34714705--34714844	74	1.9	74	95	0	253	25	25	16	32	1.96
34717335--34717425	14	6.6	14	74	18	50	70	1	16	12	1.23
34718388--34718486	40	2.6	37	73	14	94	15	23	30	31	1.95
34724264--34724306	8	5.4	8	91	0	59	39	16	23	20	1.92
34724518--34724576	29	2.1	28	93	3	100	28	13	27	30	1.94
34728719--34728749	16	1.9	16	93	0	53	35	22	0	41	1.54
34728716--34728755	20	2.0	20	85	0	53	37	22	0	40	1.54
34728828--34728872	23	1.9	24	86	4	65	22	22	11	44	1.84
34728938--34729124	55	3.5	53	72	13	166	22	24	17	35	1.95
34731550--34731608	29	2.1	28	90	3	91	28	11	27	32	1.92
34734511--34734571	15	4.2	14	76	13	61	73	3	18	4	1.14
34734516--34734590	15	5.2	14	76	14	55	74	2	18	4	1.09
34735714--34735763	26	1.9	26	84	8	66	48	0	18	34	1.48
34738198--34738369	49	3.5	49	74	10	138	22	28	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34738315--34738512	48	4.2	46	75	11	172	23	27	18	30	1.97
34753352--34753376	13	1.9	13	100	0	50	76	8	0	16	1.02
34754147--34754271	44	2.8	43	80	8	135	43	13	19	24	1.87
34762538--34762570	16	2.0	17	88	5	50	42	12	15	30	1.83
34765646--34765697	24	2.2	23	83	16	63	76	5	3	13	1.10
34765747--34765812	21	3.1	21	78	8	62	77	3	4	15	1.06
34765788--34765841	17	3.1	16	77	15	54	70	1	3	24	1.13
34766225--34766282	30	1.9	30	89	0	89	18	39	22	18	1.92
34772065--34772385	162	2.0	162	96	0	597	26	11	15	46	1.80
34777798--34777842	18	2.6	17	82	3	54	31	0	6	62	1.21
34778064--34778091	13	2.2	13	100	0	56	39	7	0	53	1.28
34779712--34779752	14	2.7	15	82	17	50	58	7	0	34	1.26
34780185--34780257	9	7.9	9	72	15	51	50	1	2	45	1.24
34780191--34780257	28	2.4	28	80	14	86	53	1	1	43	1.19
34781188--34781242	22	2.5	21	74	8	56	50	1	7	40	1.40
34784552--34784588	19	1.9	19	89	10	58	43	0	10	45	1.39
34784550--34784602	20	2.6	19	79	8	61	47	0	7	45	1.31
34788313--34788488	88	2.0	88	86	0	244	29	19	23	27	1.98
34793599--34793806	100	2.1	100	97	0	389	32	12	12	42	1.79
34793954--34794004	22	2.3	23	89	3	77	41	0	13	45	1.44
34796546--34796570	12	2.1	12	100	0	50	40	16	8	36	1.77
34801210--34801573	29	12.5	29	75	9	231	24	24	13	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34801264--34801448	86	2.1	86	80	4	203	23	26	11	37	1.90
34801210--34801463	115	2.2	117	87	2	359	24	25	12	37	1.91
34803455--34803539	43	2.0	42	93	2	143	22	23	2	51	1.59
34803789--34803885	49	2.0	49	95	0	176	32	19	12	35	1.89
34804216--34804251	19	1.9	19	94	5	65	41	16	0	41	1.48
34807656--34807699	13	3.2	13	75	12	52	25	27	13	34	1.93
34807650--34807699	13	3.6	14	74	12	50	26	32	12	30	1.92
34807643--34807699	28	2.0	28	93	0	96	26	28	14	31	1.94
34810391--34810442	23	2.3	22	83	9	61	51	0	5	42	1.25
34811461--34811492	12	2.7	12	100	0	64	75	6	0	18	1.01
34812411--34812583	46	3.7	46	81	10	217	22	20	27	29	1.99
34812408--34812579	93	1.8	93	93	0	299	22	20	27	28	1.99
34816197--34816416	80	2.8	78	82	6	226	25	27	21	25	1.99
34816196--34816363	40	4.2	40	88	2	214	25	27	22	25	1.99
34816348--34816425	40	1.9	41	82	10	97	26	28	21	23	1.99
34824064--34824286	40	5.6	40	85	3	236	26	27	21	24	1.99
34824218--34824295	40	1.9	41	82	10	97	26	28	21	23	1.99
34827332--34827553	40	5.6	40	85	4	236	24	21	27	26	1.99
34827407--34827588	78	2.3	80	82	3	226	25	20	28	25	1.99
34835278--34835447	40	4.3	40	90	0	216	24	21	28	25	1.99
34835225--34835449	80	2.8	79	83	3	254	24	21	28	26	1.99
34835300--34835482	79	2.3	80	82	1	226	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34837879--34838086	91	2.3	91	90	0	317	45	3	3	47	1.37
34837879--34838015	47	3.0	44	68	18	118	45	2	5	46	1.40
34838102--34838394	120	2.4	120	92	3	466	42	2	4	49	1.38
34838227--34838278	15	3.6	15	80	12	56	44	0	1	53	1.11
34838347--34838388	15	2.9	15	82	10	52	50	0	0	50	1.00
34838331--34838645	155	2.0	157	94	1	553	47	5	2	44	1.40
34838498--34838532	18	2.0	17	88	5	52	45	0	0	54	0.99
34838693--34838787	45	2.1	45	86	1	129	33	26	6	33	1.82
34838768--34838819	16	3.2	16	94	0	86	34	36	0	28	1.58
34843540--34843609	34	2.1	34	100	0	140	25	14	24	35	1.93
34844248--34844273	12	2.2	12	100	0	52	23	7	15	53	1.67
34855694--34855764	29	2.4	29	88	4	99	28	25	9	36	1.88
34861823--34862045	39	5.7	40	84	8	248	25	26	21	26	2.00
34861823--34862045	79	2.8	80	82	9	246	25	26	21	26	2.00
34876006--34876225	80	2.8	78	82	6	226	25	27	21	25	1.99
34876005--34876172	40	4.2	40	88	2	214	25	27	22	25	1.99
34876157--34876234	40	1.9	41	82	10	97	26	28	21	23	1.99
34883899--34884118	80	2.8	80	80	7	214	25	27	22	25	2.00
34883898--34884065	40	4.2	40	90	2	223	24	27	22	25	2.00
34884050--34884127	40	1.9	41	82	10	97	26	28	21	23	1.99
34889868--34889899	12	2.7	12	100	0	64	75	6	0	18	1.01
34890818--34890990	46	3.7	46	79	10	199	21	19	28	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34890815--34890985	93	1.8	93	91	0	279	21	19	29	30	1.97
34896430--34896485	28	2.0	29	85	3	78	14	21	44	19	1.86
34907251--34907278	14	2.0	14	100	0	56	35	7	21	35	1.81
34911206--34911420	48	4.6	48	82	3	235	27	27	19	25	1.99
34917975--34918121	45	3.2	45	67	17	138	29	25	17	26	1.98
34917945--34918179	94	2.5	94	98	0	454	28	26	17	26	1.98
34917903--34918272	48	7.8	48	73	12	289	27	26	18	27	1.98
34919075--34919117	21	2.0	21	95	0	77	41	11	23	23	1.87
34919632--34920170	104	5.2	103	78	4	440	29	17	21	31	1.97
34919632--34920170	208	2.6	207	80	3	589	29	17	21	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316