genome.fa.s1.2.7.7.80.10.50.1000.284.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  284  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94125280--94125337	8	7.2	8	76	7	55	29	1	18	50	1.57
94125283--94125337	24	2.3	24	93	0	92	29	1	20	49	1.59
94128711--94128739	14	2.1	14	100	0	58	20	0	37	41	1.53
94129651--94129682	5	6.6	5	92	7	57	81	0	0	18	0.70
94141412--94141451	12	3.5	12	83	10	57	22	2	0	75	0.93
94141553--94141624	3	24.0	3	71	13	51	33	4	4	58	1.36
94163135--94163167	11	2.9	12	86	13	52	66	0	0	33	0.92
94163756--94163849	46	2.0	46	97	0	179	45	11	12	29	1.78
94167921--94167986	30	2.2	30	83	8	80	50	12	4	33	1.60
94168074--94168111	15	2.6	15	95	4	69	47	0	13	39	1.42
94169091--94169142	24	2.0	27	82	10	65	44	0	3	51	1.19
94170923--94170956	16	2.1	17	88	5	52	47	0	20	32	1.51
94171975--94172032	30	1.9	30	89	0	89	41	5	24	29	1.76
94172244--94172275	13	2.5	13	94	0	55	31	0	12	56	1.37
94172370--94172611	50	4.7	51	86	4	301	26	24	29	19	1.98
94172370--94172619	100	2.4	103	88	6	364	26	24	29	20	1.99
94179568--94179625	30	1.9	30	89	0	89	41	5	24	29	1.76
94179837--94179868	13	2.5	13	94	0	55	31	0	12	56	1.37
94179963--94180204	50	4.7	51	84	4	292	26	24	29	19	1.98
94179963--94180212	100	2.4	103	87	6	355	25	24	29	20	1.99
94181632--94181747	25	4.6	25	74	8	101	25	25	18	29	1.98
94181634--94181747	50	2.3	50	80	8	133	25	25	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94187506--94187823	168	1.9	168	91	0	519	33	20	15	30	1.94
94189352--94189430	36	2.2	36	81	4	88	26	17	16	39	1.91
94192104--94192141	20	1.9	20	88	0	58	50	15	10	23	1.75
94193140--94193219	30	2.6	30	80	11	83	48	1	5	45	1.32
94210448--94210488	21	2.0	21	90	0	64	29	21	29	19	1.98
94217770--94217821	23	2.3	23	80	9	63	61	0	0	38	0.96
94225775--94225861	45	1.9	45	85	0	120	28	10	21	39	1.86
94236679--94236736	23	2.5	23	85	0	80	25	17	31	25	1.97
94236723--94236773	23	2.2	23	85	0	75	27	19	27	25	1.99
94244625--94244674	24	2.1	24	92	0	82	44	22	4	30	1.71
94245409--94245464	17	3.2	17	68	22	53	35	30	1	32	1.68
94245393--94245464	35	2.1	35	97	0	135	34	29	2	33	1.72
94249617--94249704	35	2.5	35	86	0	122	34	34	17	14	1.90
94251929--94252032	51	2.1	50	92	1	172	33	19	20	26	1.96
94258231--94258336	53	2.0	53	98	0	203	44	7	10	37	1.67
94258888--94258928	22	2.0	22	90	9	68	39	2	2	56	1.26
94262966--94263024	28	2.1	28	84	9	77	42	0	10	47	1.37
94263570--94263648	36	2.3	34	82	8	88	27	1	5	65	1.21
94265563--94265608	23	2.0	23	91	0	74	34	26	13	26	1.92
94277842--94278040	99	2.0	99	98	0	380	41	18	13	27	1.87
94286496--94286634	67	2.1	67	98	1	271	26	23	12	37	1.91
94287912--94287998	41	2.1	41	83	12	108	63	0	4	32	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94287941--94288000	21	3.0	20	75	20	63	65	0	3	31	1.09
94290141--94290173	2	16.5	2	93	0	57	45	0	0	54	0.99
94290886--94291393	132	3.8	131	78	3	453	27	19	17	35	1.94
94324524--94324651	63	2.0	64	98	1	249	24	18	14	42	1.88
94326807--94326849	16	2.7	16	88	0	68	27	27	25	18	1.98
94328652--94328847	39	5.0	39	93	0	329	20	22	30	26	1.99
94334840--94334877	19	2.0	20	89	5	60	42	0	2	55	1.14
94335985--94336056	33	2.2	33	84	2	90	45	13	19	20	1.84
94340144--94340182	12	3.2	12	81	0	51	66	0	2	30	1.05
94347895--94347927	11	2.9	12	86	13	52	33	0	0	66	0.92
94349399--94349462	32	2.0	32	96	0	119	45	9	10	34	1.72
94353070--94353206	35	3.9	35	89	1	204	31	24	13	31	1.93
94353087--94353222	70	1.9	70	85	2	184	30	25	11	32	1.92
94355955--94355991	14	2.6	15	83	12	51	56	0	5	37	1.22
94356927--94356952	6	4.3	6	100	0	52	19	19	15	46	1.85
94361437--94361669	111	2.1	111	93	0	396	47	8	5	38	1.57
94362302--94362509	41	5.1	41	81	8	158	40	23	19	16	1.91
94362520--94362637	54	2.2	54	81	0	146	47	34	0	16	1.53
94362749--94362797	7	7.0	7	78	0	53	26	2	26	44	1.65
94362765--94362806	21	2.0	21	86	9	59	23	7	28	40	1.81
94372457--94372503	19	2.5	19	76	10	51	21	2	4	72	1.12
94372635--94372865	43	5.4	43	89	4	326	24	18	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94378036--94378062	14	1.9	14	100	0	54	40	0	0	59	0.98
94378244--94378298	16	3.4	16	92	0	92	29	25	7	38	1.83
94382363--94382392	9	3.3	9	90	0	51	46	13	10	30	1.75
94383274--94383324	19	2.6	20	78	12	61	39	1	7	50	1.42
94383263--94383330	19	3.6	18	71	9	55	35	1	7	55	1.37
94387802--94387827	12	2.2	12	100	0	52	26	23	0	50	1.50
94392406--94392439	4	8.0	4	90	9	50	23	0	2	73	0.97
94392400--94392448	22	2.2	21	82	7	53	24	0	4	71	1.03
94400601--94400778	63	2.8	63	86	3	243	32	32	8	26	1.86
94401994--94402066	29	2.4	30	81	4	85	41	4	13	41	1.64
94402192--94402231	19	2.2	19	86	4	55	55	5	7	32	1.50
94405301--94405356	28	2.0	28	89	6	87	37	16	7	39	1.76
94405540--94405600	31	2.0	31	90	3	97	36	14	8	40	1.76
94419209--94419263	28	2.0	28	96	0	101	43	18	0	38	1.50
94419213--94419261	15	3.4	15	71	21	50	42	16	0	40	1.48
94420280--94420323	22	2.0	22	100	0	88	68	4	9	18	1.34
94422066--94422125	20	3.0	20	78	11	61	38	3	0	58	1.15
94435054--94435259	94	2.2	94	90	1	326	57	12	19	11	1.64
94435964--94436007	21	2.0	22	86	4	63	59	2	0	38	1.10
94436026--94436065	17	2.4	17	95	0	71	47	15	17	20	1.83
94444483--94444511	10	2.7	11	89	10	51	17	13	6	62	1.52
94445340--94445451	56	2.0	56	98	0	215	43	16	12	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94446830--94446868	2	19.5	2	100	0	78	51	0	48	0	1.00
94450011--94450078	29	2.3	29	85	5	93	27	30	13	27	1.94
94449900--94450227	174	1.9	174	96	0	602	30	24	14	29	1.95
94450180--94450258	29	2.7	30	82	13	110	30	30	13	25	1.94
94456939--94457296	119	3.0	119	94	0	619	33	15	19	32	1.92
94457221--94457510	83	3.5	84	88	3	410	33	16	20	28	1.95
94459161--94459210	19	2.7	19	84	6	68	26	4	2	68	1.18
94459227--94459260	15	2.3	15	90	5	52	32	0	5	61	1.20
94459227--94459338	18	6.4	16	69	24	52	33	3	2	59	1.28
94459240--94459364	18	6.9	18	70	16	89	33	4	1	60	1.28
94459291--94459350	19	2.9	21	82	14	79	35	3	0	61	1.12
94459291--94459354	21	3.2	19	78	20	67	34	3	0	62	1.11
94459311--94459363	13	4.2	13	74	16	58	33	5	0	60	1.20
94459716--94459748	7	4.7	7	100	0	66	42	0	0	57	0.98
94461017--94461200	50	3.8	50	79	13	222	24	31	19	25	1.98
94464052--94464225	46	3.8	45	76	8	172	29	28	20	21	1.98
94464060--94464230	92	1.8	93	89	1	272	28	29	20	21	1.98
94471006--94471042	19	1.9	19	94	0	65	35	5	0	59	1.20
94472606--94472638	14	2.2	16	89	10	52	21	15	12	51	1.75
94473869--94473914	24	1.9	24	81	0	56	34	23	23	17	1.96
94490219--94490286	29	2.3	29	85	5	93	27	30	13	27	1.94
94490108--94490435	174	1.9	174	96	0	602	30	24	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94490388--94490466	29	2.7	30	82	13	110	30	30	13	25	1.94
94492604--94492648	22	2.0	22	91	0	72	48	15	2	33	1.57
94497184--94497228	22	2.0	22	91	0	72	48	15	2	33	1.57
94499271--94499314	22	2.0	23	81	4	54	45	9	9	36	1.68
94509660--94509685	13	2.0	13	100	0	52	38	7	15	38	1.76
94512279--94512373	27	3.4	27	84	4	109	21	25	29	24	1.99
94518401--94518444	3	15.0	3	85	4	63	31	4	0	63	1.14
94518850--94518914	30	2.1	32	85	5	89	35	3	4	56	1.35
94518840--94518918	26	2.9	26	79	17	88	34	2	5	58	1.34
94518945--94518996	21	2.6	19	73	26	54	32	0	7	59	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316