Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  131  of  316  ( 37835 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41752938--41753657
151
4.8
151
88
3
1049
57
7
6
29
1.51
41753310--41753354
22
2.0
22
82
0
54
57
0
2
40
1.11
41753436--41753471
13
2.8
13
95
4
65
72
2
0
25
0.98
41753935--41753995
27
2.3
27
85
8
88
18
32
27
21
1.96
41754021--41754058
19
2.0
19
89
0
58
13
10
0
76
1.02
41755163--41755193
12
2.6
12
89
0
53
67
0
3
29
1.06
41757173--41757325
33
4.7
33
81
5
132
30
20
15
33
1.93
41757202--41757325
66
1.9
65
83
1
158
31
19
15
33
1.93
41763332--41763371
20
2.0
20
90
4
64
57
0
2
40
1.12
41763763--41763789
8
3.4
8
100
0
54
77
0
11
11
0.99
41765452--41765496
24
1.9
23
95
4
81
46
0
0
53
1.00
41765626--41765681
29
1.9
29
85
7
78
37
3
12
46
1.59
41770657--41770710
27
2.0
27
88
0
81
9
12
22
55
1.65
41780210--41780249
21
1.9
21
89
0
62
22
27
17
32
1.96
41786415--41786507
16
5.6
16
69
23
52
30
3
0
66
1.07
41788612--41788671
16
3.3
18
81
9
70
53
0
0
46
1.00
41790426--41790491
34
1.9
35
84
9
91
56
3
1
39
1.24
41796120--41796174
7
7.4
7
78
10
56
25
1
1
70
1.06
41796120--41796175
15
3.7
15
81
11
62
25
1
1
71
1.05
41796562--41796595
15
2.3
15
100
0
68
41
5
11
41
1.66
41796959--41797022
21
3.0
21
81
4
67
39
39
0
21
1.54
41797000--41797035
15
2.5
14
86
4
54
47
33
0
19
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41796975--41797042
21
3.2
21
79
6
57
45
30
0
23
1.53
41797061--41797105
14
3.2
14
83
0
63
46
31
0
22
1.52
41797200--41797305
7
14.9
7
78
7
72
43
35
0
19
1.58
41797200--41797246
22
2.2
22
85
11
62
44
34
0
21
1.52
41797565--41797748
76
2.4
76
82
1
208
34
19
15
30
1.93
41797888--41797980
40
2.4
39
82
8
100
20
19
20
39
1.92
41804115--41804336
40
5.6
40
92
1
367
26
26
23
23
2.00
41819850--41820071
40
5.6
40
92
1
358
26
26
22
23
2.00
41824229--41824292
32
2.0
33
87
9
96
9
20
0
70
1.14
41824274--41824302
14
2.0
15
93
6
51
6
13
3
75
1.13
41825346--41825392
6
7.5
6
86
9
58
82
0
14
2
0.75
41825348--41825390
10
4.1
10
82
11
59
86
0
11
2
0.67
41825854--41825884
14
2.2
14
94
0
53
54
0
3
41
1.16
41832747--41832792
24
1.9
24
81
0
56
34
4
6
54
1.46
41833930--41833960
16
1.9
16
100
0
62
80
6
6
6
1.02
41837631--41837745
46
2.5
45
86
6
144
24
28
19
27
1.98
41839131--41839821
231
3.0
231
98
0
1321
24
26
27
22
2.00
41840843--41840952
40
2.7
40
80
12
116
31
25
16
26
1.96
41843593--41843695
54
1.9
54
100
0
206
27
17
24
31
1.97
41844214--41844246
13
2.5
13
100
0
66
6
21
39
33
1.78
41846677--41846706
12
2.5
12
94
0
51
6
30
40
23
1.80
41848605--41848651
19
2.3
20
82
10
60
36
0
14
48
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41849000--41849243
50
4.9
50
79
3
283
27
17
25
29
1.97
41849001--41849183
101
1.8
101
90
0
294
26
18
25
30
1.98
41854553--41854824
39
7.0
39
94
0
463
21
25
29
23
1.99
41859960--41860093
39
3.4
39
85
1
115
30
30
22
16
1.96
41860002--41860274
40
6.9
40
86
3
286
26
26
22
23
2.00
41860002--41860276
80
3.5
79
84
4
315
26
26
22
24
2.00
41860023--41860274
120
2.1
119
86
5
348
26
25
22
25
2.00
41886894--41886961
25
2.7
25
88
0
100
33
22
22
22
1.97
41887678--41887721
20
2.2
20
83
4
52
43
15
2
38
1.60
41887686--41887726
20
2.0
21
85
4
57
43
12
4
39
1.63
41888977--41889039
30
2.1
30
91
5
101
58
9
3
28
1.45
41889068--41889116
22
2.2
22
81
0
62
61
10
10
18
1.55
41889076--41889115
11
3.6
11
79
0
53
57
10
12
20
1.63
41902228--41902366
51
2.8
49
86
2
188
27
20
24
27
1.99
41908336--41908390
26
2.1
26
96
0
101
36
34
0
29
1.58
41910563--41910601
17
2.2
17
86
13
53
48
15
2
33
1.58
41912902--41913002
50
2.0
50
98
0
193
38
5
16
38
1.73
41915601--41915650
23
2.2
23
92
0
82
22
4
12
62
1.46
41926731--41926767
17
2.1
19
85
10
51
32
10
16
40
1.83
41933624--41933766
40
3.6
40
94
3
236
23
23
27
25
2.00
41936541--41936573
8
4.0
8
96
4
57
75
0
12
12
1.04
41937586--41937655
21
3.2
21
68
18
61
22
14
25
37
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41937586--41937671
45
1.9
45
95
0
154
22
12
26
38
1.90
41949079--41949265
83
2.3
83
83
4
218
26
19
27
26
1.99
41957762--41957986
49
4.5
49
84
3
306
29
27
17
25
1.98
41971189--41971222
17
2.0
17
94
0
59
44
50
0
5
1.26
41975827--41975860
17
2.0
17
94
0
59
44
50
0
5
1.26
41979527--41979551
7
3.6
7
100
0
50
0
12
0
88
0.53
41979931--41979971
17
2.3
18
91
4
66
63
0
0
36
0.95
41980245--41980287
17
2.4
19
76
15
54
48
0
2
48
1.14
41991370--41991445
35
2.2
36
79
11
86
31
25
21
22
1.98
41993067--41993109
21
2.0
21
81
0
50
13
16
9
60
1.58
41994450--41994535
23
3.7
23
81
4
84
26
22
16
34
1.95
41994470--41994535
23
2.9
23
88
0
87
24
22
16
36
1.94
41996354--41996380
13
2.1
13
100
0
54
37
0
25
37
1.57
41998625--41998802
46
3.8
46
77
4
214
28
28
20
21
1.98
41998633--41998803
93
1.8
93
92
0
288
28
29
21
21
1.98
42001947--42002006
19
3.2
19
100
0
120
26
11
15
46
1.79
42006505--42006539
2
18.0
2
94
5
63
48
51
0
0
1.00
42006507--42006539
17
1.9
17
100
0
66
48
51
0
0
1.00
42006827--42006899
26
2.9
25
75
13
69
1
23
4
71
1.11
42010316--42010360
22
2.0
22
91
0
72
33
2
15
48
1.57
42014089--42014133
22
2.0
22
91
0
72
33
2
15
48
1.57
42049727--42049902
46
3.8
46
78
15
200
21
19
29
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42049724--42049893
93
1.8
93
93
0
295
21
20
30
28
1.98
42051407--42051466
28
2.2
26
75
11
66
26
23
13
36
1.92
42051414--42051477
28
2.3
28
88
0
101
28
21
12
37
1.90
42053622--42053782
79
2.0
79
95
0
286
34
11
16
37
1.85
42054102--42054140
20
1.9
21
84
5
53
41
12
2
43
1.56
42060036--42060303
131
2.0
131
98
0
518
33
10
24
31
1.89
42074782--42074826
20
2.2
20
84
7
56
37
6
0
55
1.26
42081575--42081613
19
2.1
19
100
0
78
66
12
5
15
1.41
42086182--42086222
21
2.0
21
90
0
64
43
2
2
51
1.28
42086183--42086238
21
2.6
21
82
2
58
48
5
1
44
1.36
42086267--42086373
19
5.8
18
70
18
60
51
3
2
42
1.34
42096665--42096888
40
5.6
40
84
6
292
25
26
23
24
2.00
42096665--42096888
83
2.8
80
86
5
292
25
26
23
24
2.00
42101283--42101439
38
3.9
38
76
14
161
28
15
24
30
1.96
42109827--42109912
40
2.2
39
83
6
102
26
17
30
25
1.97
42113988--42114176
43
4.4
43
88
4
267
30
32
22
14
1.94
42114148--42114231
38
2.2
38
84
0
114
32
26
20
21
1.98
42117224--42117299
29
2.6
30
85
8
104
23
32
17
26
1.96
42119903--42120028
47
2.7
48
81
14
154
22
31
19
26
1.97
42121123--42121157
18
1.9
18
88
0
52
54
25
2
17
1.57
42131500--42131594
25
3.8
25
76
5
93
25
21
24
29
1.99
42141480--42141505
13
2.0
13
100
0
52
53
15
0
30
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42141926--42141952
14
1.9
14
100
0
54
59
11
7
22
1.56
42161463--42161737
49
5.5
49
83
3
361
26
18
26
28
1.98
42161458--42161745
100
2.9
100
97
0
540
25
19
26
28
1.99
42164707--42164793
34
2.5
35
80
10
90
31
8
16
44
1.76
42167202--42167293
28
3.2
28
81
3
121
23
15
36
23
1.93
42169594--42169633
21
2.0
21
85
5
55
30
15
20
35
1.93
42175443--42175544
34
3.0
34
80
7
91
27
25
20
26
1.99
42185593--42185917
48
7.3
41
81
8
220
29
25
16
28
1.97
42185706--42185893
48
3.9
48
91
2
290
27
24
17
30
1.97
42185847--42186029
37
4.8
37
82
13
205
25
28
18
26
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316