genome.fa.s1.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  135  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43203491--43203538	20	2.5	20	86	3	71	77	0	0	22	0.78
43204202--43204251	22	2.2	23	82	10	59	72	2	2	24	1.06
43210225--43210311	43	2.0	43	95	0	156	42	5	5	45	1.51
43211148--43211341	44	4.4	44	79	7	198	16	18	18	46	1.84
43211148--43211385	88	2.7	87	83	5	266	16	18	17	47	1.83
43211177--43211387	44	4.8	44	80	4	212	15	18	17	48	1.81
43211405--43211463	28	2.1	28	81	6	66	25	6	16	50	1.70
43213468--43213523	7	7.9	7	80	9	51	55	0	1	42	1.10
43218287--43218361	35	2.2	35	95	2	134	40	0	17	42	1.49
43221270--43221425	41	3.9	38	85	7	186	35	19	19	25	1.95
43221992--43222042	14	3.6	14	75	15	59	41	33	3	21	1.72
43223262--43223313	19	2.7	20	84	6	70	26	38	1	32	1.68
43225972--43226105	64	2.1	64	97	0	250	38	11	4	45	1.61
43226153--43226223	24	3.0	24	87	0	106	28	19	8	43	1.80
43226397--43226470	29	2.6	29	88	0	112	44	1	2	51	1.24
43226427--43226481	15	3.7	15	79	20	71	45	0	0	54	0.99
43226592--43226881	9	32.7	9	82	4	302	47	14	2	35	1.57
43226593--43226881	44	6.5	44	87	2	181	47	14	2	35	1.57
43226592--43226881	124	2.3	124	94	1	492	47	14	2	35	1.57
43228750--43228774	12	2.1	12	100	0	50	32	8	28	32	1.86
43231990--43232141	40	3.8	40	97	0	286	24	29	21	25	1.99
43235816--43235844	14	2.1	14	93	6	51	34	0	6	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43236271--43236355	21	4.0	21	83	11	111	29	20	49	1	1.56
43238646--43238698	16	3.5	15	78	14	56	56	7	1	33	1.38
43238662--43238723	29	2.2	28	83	13	74	58	6	1	33	1.34
43238707--43238909	3	66.7	3	71	15	91	61	3	3	31	1.29
43238807--43238850	16	2.8	16	86	6	54	50	6	4	38	1.50
43239012--43239050	3	12.7	3	89	5	60	61	0	2	35	1.10
43238841--43239359	141	3.5	141	83	10	623	59	5	3	30	1.38
43239101--43239152	16	3.2	16	78	8	52	55	5	1	36	1.35
43239141--43239197	23	2.5	21	83	11	60	64	3	1	29	1.20
43239284--43239324	21	1.9	22	85	14	59	58	9	0	31	1.31
43239313--43239368	3	18.7	3	78	7	60	58	0	5	35	1.21
43239313--43239390	27	3.1	24	79	16	79	60	0	6	33	1.22
43240833--43241097	133	2.0	134	84	5	349	36	16	15	30	1.90
43240964--43241326	77	4.8	77	80	5	402	33	19	16	29	1.94
43240964--43241319	152	2.3	150	83	4	464	32	20	16	30	1.95
43255094--43255139	14	3.1	14	87	6	65	54	6	2	36	1.39
43255126--43255166	19	2.2	19	86	8	57	60	7	0	31	1.24
43255059--43255812	153	5.1	145	82	12	636	60	5	3	30	1.35
43255429--43255464	3	11.7	3	94	5	63	63	0	0	36	0.94
43255635--43255758	23	5.4	21	73	22	92	62	4	1	32	1.24
43255704--43255758	11	4.8	11	78	14	58	63	3	1	30	1.22
43255635--43255749	14	8.7	13	68	21	62	62	4	0	32	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43255132--43255909	144	5.2	146	86	8	1051	60	5	3	30	1.36
43255844--43255889	22	2.1	22	84	11	60	58	8	0	32	1.28
43255873--43255934	3	20.7	3	73	6	54	56	0	6	37	1.25
43255884--43255936	18	2.9	18	83	5	63	54	0	7	37	1.29
43256756--43256836	39	2.1	39	97	0	153	23	16	4	55	1.60
43261979--43262042	18	3.6	18	91	0	101	21	20	14	43	1.87
43268833--43268861	14	2.1	14	100	0	58	51	20	13	13	1.75
43273186--43273229	22	2.0	22	91	8	72	40	0	18	40	1.50
43273296--43273372	8	10.0	8	72	16	56	18	0	31	50	1.47
43273300--43273369	7	9.3	7	74	11	59	18	0	31	50	1.48
43273300--43273374	14	5.0	14	76	12	69	20	0	30	49	1.49
43273357--43273400	22	2.0	23	95	4	81	29	0	27	43	1.55
43273134--43273651	175	2.9	173	90	4	761	33	1	19	44	1.60
43273460--43273574	47	2.5	44	72	14	99	27	1	24	46	1.63
43273653--43273913	126	2.1	125	89	3	391	38	17	16	27	1.91
43274734--43274961	46	5.0	47	89	4	306	21	23	15	39	1.91
43277092--43277144	11	4.7	11	75	13	54	64	3	0	32	1.12
43277092--43277157	34	2.0	33	82	8	82	59	4	0	36	1.18
43281019--43281063	24	2.0	23	86	8	65	17	22	33	26	1.96
43281296--43281360	30	2.2	30	85	0	85	13	15	41	29	1.86
43282430--43282457	13	2.2	13	100	0	56	64	0	0	35	0.94
43286823--43286870	19	2.6	19	96	3	89	37	0	12	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43286878--43286959	39	2.1	39	88	4	121	34	1	12	52	1.47
43286946--43287159	104	2.1	105	89	2	333	34	8	9	47	1.66
43296293--43296456	39	4.2	39	89	0	238	21	24	20	33	1.97
43296256--43296456	78	2.6	78	85	3	246	22	24	19	32	1.97
43305366--43305392	14	1.9	14	100	0	54	22	18	7	51	1.70
43307736--43307804	31	2.3	31	92	2	113	42	14	10	33	1.79
43315522--43315562	15	2.6	15	84	7	55	41	17	2	39	1.62
43315571--43315637	23	2.9	24	70	17	68	49	19	2	28	1.63
43315557--43315630	22	3.3	22	71	14	69	48	21	2	27	1.63
43323683--43323727	22	2.0	22	86	0	63	28	8	20	42	1.82
43325096--43325280	40	4.7	40	79	6	198	24	27	23	24	2.00
43325096--43325280	79	2.3	82	80	7	202	24	27	23	24	2.00
43333045--43333229	40	4.7	40	78	6	189	24	25	23	25	2.00
43333045--43333229	79	2.3	81	78	7	191	24	25	23	25	2.00
43337378--43337435	29	2.0	30	86	3	82	13	25	22	37	1.91
43337419--43337463	22	2.0	22	91	0	72	24	26	15	33	1.95
43352630--43352674	22	2.0	22	91	0	72	17	24	22	35	1.95
43352850--43352914	25	2.5	25	80	14	62	38	6	13	41	1.70
43362501--43362584	38	2.2	38	100	0	168	61	13	10	14	1.56
43365779--43366007	40	5.7	40	84	5	275	24	19	27	27	1.99
43365780--43366007	120	1.9	120	88	2	341	25	19	27	27	1.99
43371116--43371191	23	3.2	25	60	17	61	31	14	31	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43371038--43371311	47	5.8	47	86	7	349	31	10	29	28	1.90
43371038--43371309	92	2.9	93	86	5	343	31	10	29	28	1.90
43371289--43371334	23	2.0	23	95	0	83	30	13	28	28	1.94
43371242--43371381	70	2.0	70	94	0	244	32	12	29	26	1.92
43371312--43371441	47	2.8	47	89	0	197	33	11	29	26	1.91
43371197--43371428	117	2.0	115	87	5	333	31	11	29	28	1.91
43371415--43371505	46	2.0	46	86	0	128	32	8	31	26	1.87
43371687--43371797	37	3.0	37	92	2	170	21	16	31	30	1.95
43374978--43375126	27	5.6	27	84	1	192	30	12	14	42	1.82
43374978--43375114	54	2.6	54	92	1	231	29	13	14	42	1.84
43375456--43375490	18	1.9	18	88	0	52	14	14	17	54	1.72
43384767--43384826	21	2.9	21	76	18	63	35	13	13	38	1.84
43389691--43389866	23	7.7	23	84	5	203	23	19	26	30	1.98
43389691--43389849	46	3.5	46	89	1	230	23	20	25	30	1.98
43399563--43399614	27	2.0	27	81	11	63	32	19	15	32	1.93
43407153--43407188	17	2.1	18	89	5	56	16	36	36	11	1.84
43407467--43407518	28	2.0	27	85	11	72	26	13	15	44	1.84
43411058--43411211	43	3.6	42	77	9	143	25	20	24	29	1.99
43411058--43411193	42	3.2	42	80	7	123	27	19	22	29	1.98
43425297--43425451	43	3.6	44	77	11	151	23	20	26	29	1.99
43428604--43428664	30	2.0	30	83	0	77	32	22	6	37	1.80
43432212--43432349	43	3.2	43	82	7	147	33	26	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43432209--43432382	86	2.0	85	80	9	194	35	25	15	23	1.94
43434646--43435057	38	10.9	38	81	1	452	13	20	31	34	1.91
43435033--43435085	22	2.4	22	90	6	81	5	15	35	43	1.70
43439889--43439945	27	2.1	27	83	0	69	29	24	15	29	1.96
43439957--43440012	26	2.2	26	86	0	76	39	21	16	23	1.92
43439889--43440084	108	1.8	108	83	4	261	30	24	15	29	1.96
43439969--43440054	26	3.3	26	80	3	100	29	23	19	27	1.98
43439981--43440087	27	4.0	26	76	10	99	28	25	17	28	1.98
43441586--43441617	16	2.0	16	100	0	64	25	6	18	50	1.70
43451092--43451117	13	2.0	13	100	0	52	38	7	23	30	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316