genome.fa.s1.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  154  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48807563--48807633	22	3.2	22	91	0	115	36	47	4	11	1.59
48807550--48807656	44	2.4	44	78	6	110	36	46	3	13	1.60
48809989--48810019	5	6.2	5	100	0	62	80	0	19	0	0.71
48815912--48815968	25	2.3	25	82	11	64	40	21	8	29	1.83
48837015--48837331	47	6.7	47	93	0	492	31	9	31	28	1.88
48837450--48837528	37	2.1	37	88	4	115	25	18	30	25	1.98
48838721--48838866	43	3.4	43	99	0	283	22	15	35	26	1.94
48838848--48838920	29	2.6	29	86	6	96	26	16	31	26	1.96
48839309--48839465	40	3.9	40	89	0	233	26	22	26	24	2.00
48839230--48839460	120	1.9	120	81	5	279	26	22	25	24	2.00
48843675--48844038	47	7.7	47	91	0	550	31	9	30	27	1.89
48843888--48843963	22	3.3	22	64	10	62	30	11	30	27	1.92
48844157--48844236	37	2.2	37	86	4	108	25	17	30	27	1.97
48845952--48846001	26	1.9	26	88	8	75	46	0	20	34	1.51
48848442--48848600	43	3.7	42	81	9	180	23	17	27	31	1.97
48855897--48856054	43	3.7	43	78	12	173	25	19	24	30	1.98
48865708--48865891	43	4.3	43	86	2	235	30	29	17	21	1.97
48866050--48866097	20	2.4	21	82	10	64	68	6	2	22	1.23
48867936--48867984	24	2.0	24	100	0	98	42	20	8	28	1.80
48871376--48871402	14	1.9	14	100	0	54	70	0	14	14	1.17
48873706--48873744	14	2.7	14	88	4	51	38	43	0	17	1.50
48873823--48873913	14	6.0	14	69	16	56	43	29	1	25	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48874072--48874277	41	5.1	41	80	7	215	20	21	19	37	1.94
48874072--48874278	79	2.6	80	78	7	222	20	21	19	37	1.94
48881484--48881559	21	3.5	20	71	16	62	23	13	26	36	1.91
48881488--48881578	45	2.0	45	91	0	146	26	13	24	36	1.92
48881940--48882026	43	2.0	43	95	0	156	45	3	22	27	1.68
48900321--48900608	48	6.0	48	96	1	526	34	6	28	30	1.82
48900321--48900608	142	2.0	143	95	1	524	34	6	28	30	1.82
48900321--48900599	94	2.9	94	96	1	513	34	6	28	31	1.82
48900749--48900851	37	2.8	37	90	0	170	23	18	32	26	1.97
48905760--48905982	99	2.3	95	83	8	256	24	30	18	26	1.98
48905710--48905984	48	5.7	48	77	9	224	24	30	18	26	1.98
48918951--48919006	26	2.2	26	83	6	69	26	17	19	35	1.94
48926548--48926671	43	2.9	44	85	2	144	33	28	15	22	1.94
48938278--48938318	3	13.7	3	100	0	82	0	31	0	68	0.90
48939699--48939786	43	2.0	43	97	0	167	50	18	10	21	1.76
48939714--48939782	22	3.2	22	60	12	52	50	17	7	24	1.71
48942410--48942671	39	6.7	40	86	7	319	25	22	26	24	2.00
48949156--48949232	40	1.9	40	83	0	100	37	20	15	25	1.92
48951081--48951200	59	2.0	59	100	0	240	52	8	11	27	1.66
48952495--48952520	12	2.2	12	100	0	52	50	7	15	26	1.71
48964881--48964931	25	2.1	24	85	3	66	37	39	0	23	1.55
48972063--48972154	27	3.4	27	89	0	130	29	21	7	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48972186--48972285	27	3.7	27	82	5	139	42	22	7	29	1.79
48972153--48972285	54	2.5	53	78	8	135	39	20	10	29	1.86
48972186--48972298	27	4.2	27	82	4	138	43	20	6	30	1.76
48972239--48972364	27	4.6	27	76	13	89	45	18	5	30	1.72
48972287--48972372	27	3.1	27	80	14	95	39	13	9	37	1.78
48972413--48972486	27	2.7	27	76	12	71	37	20	20	21	1.94
48972426--48972490	27	2.4	27	82	5	78	35	18	24	21	1.96
48973272--48973341	25	2.8	25	89	4	97	27	22	24	25	2.00
48973297--48973368	25	3.0	24	80	13	76	29	22	22	26	1.99
48973561--48973638	31	2.5	31	97	2	149	28	17	26	26	1.98
48980698--48980814	46	2.5	48	88	2	166	29	17	28	23	1.97
48985142--48985184	14	2.9	15	86	6	52	11	16	16	55	1.68
48990107--48990219	29	3.9	29	83	1	129	31	33	9	24	1.88
48990435--48990465	16	1.9	16	93	0	53	9	22	19	48	1.78
48992093--48992192	49	2.0	49	90	0	155	25	24	21	30	1.99
48992268--48992364	11	8.6	11	72	12	72	65	5	8	20	1.38
48992261--48992365	34	3.1	34	83	6	124	63	5	8	21	1.43
48992280--48992331	23	2.4	21	87	6	68	71	7	3	17	1.25
48992348--48992372	13	1.9	13	100	0	50	68	0	8	24	1.16
49005693--49005727	18	1.9	18	100	0	70	22	22	37	17	1.94
49005793--49005872	29	2.8	28	85	7	99	23	16	32	27	1.96
49026352--49026386	18	1.9	18	100	0	70	22	22	37	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49026453--49026532	29	2.8	28	85	7	99	23	16	32	27	1.96
49030731--49030825	29	3.3	28	81	8	111	28	27	15	28	1.96
49031048--49031083	16	2.2	16	90	0	54	8	22	16	52	1.70
49032351--49032389	16	2.4	17	87	12	55	12	5	33	48	1.63
49035284--49035387	29	3.7	29	83	7	124	27	28	15	27	1.96
49035264--49035372	58	1.9	57	84	1	146	26	29	16	27	1.97
49035597--49035639	16	2.7	16	88	0	68	9	23	18	48	1.76
49037083--49037206	49	2.5	49	80	2	142	31	20	25	21	1.98
49043285--49043460	46	3.8	46	75	7	167	23	21	26	29	1.99
49050218--49050256	17	2.2	18	86	4	53	53	5	0	41	1.23
49053813--49053838	13	2.0	13	100	0	52	46	0	0	53	1.00
49054411--49054453	12	3.4	12	78	12	50	72	4	0	23	1.04
49054566--49054621	30	1.9	28	89	7	85	55	0	0	44	0.99
49057469--49057520	23	2.3	22	75	21	54	9	23	1	65	1.32
49064544--49064799	55	4.8	53	78	8	227	36	16	24	22	1.94
49064873--49064917	23	1.9	24	86	4	65	44	11	22	22	1.84
49064996--49065026	16	1.9	16	93	0	53	41	0	22	35	1.54
49070714--49070833	57	2.1	58	85	4	163	48	8	16	26	1.75
49070822--49070847	13	2.0	13	100	0	52	69	0	15	15	1.20
49070748--49070860	57	2.0	57	84	6	149	49	7	15	26	1.72
49072034--49072060	13	2.1	13	100	0	54	33	14	7	44	1.73
49075800--49075911	58	1.9	59	92	1	190	31	8	7	53	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49076571--49077271	364	1.9	364	97	0	1330	39	12	11	37	1.79
49077225--49077290	29	2.2	29	86	5	87	48	15	13	22	1.80
49077848--49077902	28	2.0	27	85	3	74	45	0	1	52	1.11
49078159--49078198	19	2.1	19	90	0	62	22	2	2	72	1.09
49078317--49078619	162	1.9	161	87	6	452	45	9	8	36	1.67
49085087--49085145	21	3.0	20	80	9	59	61	5	32	1	1.28
49085111--49085159	19	2.4	19	80	10	53	65	6	28	0	1.16
49086474--49086730	129	2.0	129	84	3	338	28	14	29	27	1.95
49090707--49090741	17	1.9	19	88	11	56	25	2	5	65	1.28
49091157--49091213	22	2.5	23	78	13	64	8	22	0	68	1.17
49091266--49091301	19	2.0	19	89	10	58	2	30	0	66	1.06
49092724--49092853	50	2.6	49	91	1	197	30	29	16	23	1.97
49092724--49092910	101	1.9	99	85	4	259	28	29	17	24	1.97
49094571--49094635	15	4.4	15	78	16	73	63	13	13	9	1.53
49094571--49094639	30	2.3	31	83	14	92	60	17	13	8	1.56
49094635--49094669	17	2.1	17	100	0	70	42	28	11	17	1.83
49097652--49097781	50	2.6	49	91	1	197	30	29	16	23	1.97
49097652--49097838	101	1.9	99	85	4	259	28	29	17	24	1.97
49105491--49105940	47	9.5	47	92	3	724	32	9	29	28	1.88
49105491--49105940	191	2.4	190	93	1	771	32	9	29	28	1.88
49106059--49106137	37	2.1	37	90	0	122	24	18	31	25	1.98
49107351--49107582	40	5.8	40	88	0	347	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49111088--49111537	96	4.7	96	96	1	784	32	9	30	28	1.88
49111088--49111537	47	9.5	47	92	3	740	32	9	30	28	1.88
49111656--49111734	37	2.1	37	90	0	122	24	18	31	25	1.98
49114055--49114191	69	2.0	69	100	0	274	30	17	22	29	1.97
49114498--49114717	47	4.7	48	77	12	210	22	30	19	27	1.98
49114494--49114717	94	2.4	93	82	8	274	22	30	19	27	1.98
49116795--49116986	40	4.8	40	92	1	226	27	27	21	23	1.99
49116766--49116985	80	2.8	80	81	4	248	28	27	20	23	1.99
49118999--49119111	59	1.9	59	92	0	190	15	30	12	42	1.83
49125482--49125711	47	4.9	47	77	10	231	21	30	18	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316