genome.fa.s1.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  130  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41407393--41407595	49	4.2	48	78	9	180	30	19	26	23	1.98
41407393--41407569	98	1.8	98	82	4	232	29	20	26	23	1.98
41408810--41408848	21	1.9	20	85	15	53	17	41	25	15	1.89
41410435--41410468	7	4.9	7	88	0	50	32	35	0	32	1.58
41410834--41411017	89	2.1	89	97	1	352	44	20	5	29	1.75
41419497--41419549	28	2.0	27	85	7	72	18	13	32	35	1.90
41419513--41419616	28	3.7	28	79	7	104	25	15	32	26	1.95
41421826--41421886	27	2.3	27	78	10	65	47	4	1	45	1.34
41424712--41424759	24	2.0	25	84	12	64	58	4	4	33	1.36
41425759--41426315	301	1.9	301	94	1	1001	38	17	13	30	1.88
41426423--41426448	12	2.2	12	100	0	52	7	15	30	46	1.74
41426479--41426760	41	6.9	41	83	4	286	34	20	24	21	1.97
41426756--41426805	18	2.8	18	76	14	50	52	28	2	18	1.56
41427065--41427106	22	2.0	21	85	4	57	21	0	38	40	1.53
41427064--41427096	15	2.3	15	89	5	50	21	0	30	48	1.50
41427129--41427166	15	2.6	15	83	4	51	28	0	28	42	1.56
41427132--41427175	22	2.0	22	86	0	61	34	0	29	36	1.58
41427403--41427468	22	3.0	22	70	14	57	25	1	25	46	1.61
41430349--41430381	6	5.0	7	85	14	52	45	9	0	45	1.35
41430346--41430381	13	2.8	13	100	0	72	44	8	0	47	1.33
41431946--41432095	43	3.5	43	83	8	162	25	13	27	34	1.93
41432186--41432244	22	2.7	22	91	0	100	45	20	15	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41432436--41432532	49	2.0	49	93	0	167	24	25	17	31	1.97
41438428--41438469	20	2.0	20	86	4	57	42	14	4	38	1.66
41438993--41439026	11	3.1	11	86	0	50	14	8	11	64	1.49
41439117--41439159	22	2.0	22	85	0	59	27	4	18	48	1.68
41439250--41439294	20	2.2	20	92	0	72	44	0	8	46	1.34
41441747--41441851	28	3.7	28	83	9	133	23	34	15	26	1.94
41441747--41441863	28	4.1	28	82	10	123	25	32	13	28	1.94
41441941--41441991	9	5.4	9	81	9	66	11	39	21	27	1.88
41441932--41441987	19	3.0	19	89	2	78	14	39	19	26	1.90
41441941--41441996	19	2.9	19	89	0	85	12	37	19	30	1.89
41446926--41446959	11	3.1	11	86	0	50	14	8	11	64	1.49
41447166--41447214	24	2.0	25	84	11	66	57	0	34	8	1.29
41456270--41456346	40	1.9	40	89	0	118	15	12	33	37	1.86
41463128--41463213	42	2.0	42	100	0	172	39	18	6	34	1.78
41463760--41463815	26	2.2	26	96	0	103	30	7	25	37	1.82
41465303--41465355	26	2.0	26	82	7	63	37	20	15	26	1.92
41466956--41466986	12	2.6	12	94	0	53	9	22	51	16	1.73
41470892--41470947	26	2.2	26	93	0	94	30	7	26	35	1.83
41485565--41485617	27	2.0	27	82	14	65	28	5	3	62	1.35
41485631--41485812	43	4.2	43	94	0	247	23	22	29	25	1.99
41485650--41485836	43	4.3	43	91	2	241	26	22	25	25	2.00
41487982--41488122	39	3.6	39	90	0	219	45	19	3	31	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41489884--41490056	46	3.8	45	78	14	185	23	20	26	29	1.99
41489881--41490051	93	1.8	93	90	7	276	23	20	27	28	1.99
41492451--41492485	7	4.9	7	86	6	52	85	0	14	0	0.59
41492452--41492485	11	3.1	11	91	0	59	88	0	11	0	0.52
41492454--41492483	15	1.9	16	93	6	53	86	0	13	0	0.57
41493735--41493880	40	3.7	40	82	6	163	23	23	28	24	2.00
41500681--41500853	46	3.7	46	80	11	210	21	20	27	29	1.98
41500678--41500848	93	1.8	93	93	2	299	21	21	28	28	1.98
41501077--41501114	19	2.0	20	85	15	53	36	0	23	39	1.55
41507169--41507217	23	2.1	23	100	0	98	22	38	4	34	1.73
41508641--41508698	22	2.6	21	78	10	71	31	6	18	43	1.77
41511073--41511114	21	2.0	21	100	0	84	33	28	9	28	1.88
41525690--41525733	6	7.3	6	100	0	88	18	18	0	63	1.31
41548165--41548212	24	2.0	24	100	0	96	33	4	0	62	1.14
41548560--41548591	13	2.5	13	89	0	55	40	6	18	34	1.76
41549639--41549677	17	2.4	17	91	4	62	46	2	5	46	1.38
41550522--41550632	55	2.0	55	98	0	213	46	13	10	28	1.77
41552063--41552197	68	2.0	69	86	7	195	40	5	5	48	1.50
41556437--41556795	48	7.5	48	96	0	646	33	8	28	29	1.86
41556965--41557104	37	3.8	37	97	0	253	23	19	32	25	1.98
41558386--41558696	40	7.8	40	94	1	482	20	22	30	26	1.98
41558590--41558656	23	3.2	23	64	24	65	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41558702--41558834	29	4.7	29	80	8	121	21	15	30	32	1.94
41558703--41558834	57	2.3	57	83	5	151	21	15	31	31	1.95
41562022--41562429	48	8.5	48	96	0	726	34	7	28	29	1.85
41562599--41562738	37	3.8	37	97	0	253	23	19	32	25	1.98
41567213--41567245	14	2.3	15	94	5	59	24	0	18	57	1.40
41567235--41567298	23	2.7	23	95	2	110	12	0	31	56	1.37
41567400--41567532	29	4.6	29	88	0	178	39	6	21	33	1.79
41567713--41567810	19	5.2	19	92	7	164	37	10	16	35	1.82
41572859--41573009	75	2.0	75	98	0	293	32	10	15	41	1.81
41577630--41577859	46	5.0	46	87	2	291	20	22	15	41	1.89
41590657--41590687	8	3.9	8	95	0	53	41	25	9	22	1.84
41592187--41592253	33	2.0	33	97	0	125	29	16	14	38	1.89
41595371--41595432	31	2.0	31	93	0	106	14	19	32	33	1.92
41597308--41597341	12	2.8	12	95	0	59	0	23	44	32	1.54
41597876--41597928	24	2.1	26	86	6	74	64	5	0	30	1.17
41598943--41599020	33	2.4	33	81	12	97	25	24	17	32	1.97
41599015--41599246	116	2.0	116	100	0	464	29	23	11	36	1.89
41601240--41601284	17	2.5	19	82	7	58	66	2	2	28	1.15
41601267--41601293	14	1.9	14	100	0	54	77	0	0	22	0.76
41601345--41601403	16	3.5	16	76	13	55	64	3	1	30	1.20
41603312--41603363	27	1.9	27	84	7	70	25	5	30	38	1.79
41610866--41610902	18	2.2	17	90	9	58	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41610877--41610918	21	2.0	21	86	13	61	33	2	2	61	1.21
41619663--41619689	3	9.0	3	100	0	54	66	0	33	0	0.92
41621965--41622026	30	2.1	29	82	8	72	46	3	0	50	1.17
41625514--41625592	28	2.8	28	88	0	113	34	12	25	27	1.92
41626001--41626041	21	1.9	22	85	5	57	39	4	24	31	1.76
41632151--41632229	28	2.8	28	88	0	113	32	10	26	30	1.89
41640332--41640378	10	4.7	10	89	7	69	25	8	2	63	1.34
41646711--41646772	10	4.8	13	72	21	51	29	3	0	67	1.06
41646732--41646763	15	2.1	16	88	11	50	37	0	0	62	0.95
41646854--41647026	75	2.3	75	82	3	204	33	33	9	23	1.87
41655210--41655330	45	2.7	45	85	0	161	22	22	15	39	1.91
41688125--41688347	79	2.8	78	82	9	247	24	26	22	26	2.00
41688125--41688347	39	5.7	40	85	8	257	24	26	22	26	2.00
41696097--41696318	39	5.7	40	85	9	257	24	27	22	25	2.00
41699434--41700225	95	8.4	95	84	1	890	29	18	13	38	1.89
41709206--41709239	11	3.2	10	88	12	50	8	0	29	61	1.26
41713112--41713192	32	2.6	32	84	7	103	44	8	12	34	1.73
41713112--41713199	31	2.8	31	84	8	106	43	10	11	35	1.75
41715687--41715786	41	2.4	41	93	0	164	28	24	24	24	2.00
41716632--41716691	26	2.3	26	81	13	70	50	0	0	50	1.00
41723476--41723520	16	2.8	16	93	0	72	64	0	11	24	1.26
41724014--41724073	20	3.0	20	72	18	70	46	23	5	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41729434--41729572	69	2.0	69	100	0	278	52	17	12	17	1.74
41732041--41732107	24	2.8	24	76	0	71	38	20	20	19	1.93
41743466--41743509	23	1.9	23	86	9	63	36	15	25	22	1.94
41745587--41745691	24	4.4	24	71	3	68	40	20	20	19	1.91
41748098--41748131	18	1.9	17	94	5	59	0	58	0	41	0.98
41748191--41748253	25	2.4	27	77	17	71	4	33	1	60	1.27
41751042--41751081	20	2.0	20	90	0	62	50	12	10	27	1.72
41751030--41751096	34	1.9	35	87	3	100	46	11	8	32	1.72
41751121--41751167	23	2.0	23	100	0	94	34	19	4	42	1.70
41752739--41752805	27	2.5	27	92	4	109	16	31	35	16	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316