genome.fa.s1.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  160  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50798405--50798526	22	5.3	22	62	21	61	25	29	11	33	1.91
50798377--50799032	47	13.6	47	89	6	845	28	29	8	33	1.88
50798902--50798937	14	2.4	16	81	18	58	36	27	0	36	1.57
50798908--50798937	14	2.1	14	100	0	60	36	26	0	36	1.57
50798861--50798984	61	2.0	61	100	0	248	31	27	6	34	1.82
50798814--50799031	108	2.0	108	99	0	427	30	27	7	33	1.84
50800298--50800476	85	2.1	85	98	0	349	26	27	8	37	1.85
50801756--50802012	40	6.4	40	92	1	376	23	21	28	26	1.99
50810198--50810297	51	2.0	51	88	4	148	32	29	17	22	1.96
50815548--50815665	45	2.7	46	82	6	163	26	16	28	27	1.97
50815935--50816137	38	5.4	37	84	5	203	23	20	24	31	1.98
50815962--50816165	38	5.4	38	88	1	275	22	20	24	32	1.97
50816163--50816334	45	3.9	45	80	7	174	23	22	28	25	1.99
50820509--50820732	50	4.6	49	79	9	194	26	18	29	25	1.98
50820509--50820688	100	1.8	96	85	4	252	27	18	28	25	1.98
50830505--50830550	20	2.3	21	82	14	62	58	15	19	6	1.58
50844104--50844302	51	3.9	51	88	1	301	29	23	14	33	1.94
50844330--50844420	28	3.4	28	79	11	109	26	19	16	37	1.93
50844338--50844416	24	3.1	25	82	10	97	24	20	16	39	1.92
50850210--50850289	37	2.2	37	93	0	142	32	17	13	36	1.89
50851213--50851399	27	6.9	27	75	7	173	25	16	17	40	1.90
50851213--50851400	81	2.3	81	78	7	193	26	16	17	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50852258--50852323	27	2.4	27	87	0	96	31	15	19	33	1.93
50852569--50852611	22	2.0	22	90	0	68	11	32	25	30	1.91
50853935--50854092	43	3.7	43	81	5	167	26	15	25	32	1.95
50858289--50858315	11	2.5	11	100	0	54	18	7	11	62	1.50
50858655--50858713	20	3.0	20	79	0	64	44	13	10	32	1.77
50859940--50860007	29	2.3	29	89	0	100	14	5	33	45	1.69
50860472--50860504	17	1.9	17	88	11	50	33	3	21	42	1.68
50861156--50861399	75	3.2	75	91	2	391	29	15	18	36	1.91
50861126--50861399	75	3.6	75	89	1	388	29	16	18	35	1.93
50863491--50863572	42	1.9	43	92	2	139	42	24	10	21	1.85
50863491--50863549	22	2.8	21	70	7	57	44	27	10	18	1.82
50869565--50869604	21	2.0	20	90	5	62	35	0	22	42	1.54
50869570--50869612	21	2.1	21	83	12	54	32	0	20	46	1.51
50871837--50871934	42	2.3	42	81	8	119	24	16	26	32	1.96
50879606--50879662	30	1.9	30	85	0	78	36	8	19	35	1.83
50880499--50880583	25	3.2	25	64	23	66	36	15	24	23	1.93
50880475--50880736	54	4.9	54	85	5	341	36	16	24	23	1.94
50882631--50882660	3	10.0	3	100	0	60	66	0	33	0	0.92
50887339--50887417	37	2.1	37	88	4	115	25	30	18	25	1.98
50887536--50888058	47	11.1	47	95	0	875	28	29	8	32	1.88
50894774--50894837	28	2.3	28	89	5	94	18	17	35	28	1.93
50895154--50895387	27	8.7	27	78	8	185	38	20	11	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50895154--50895332	54	3.3	54	86	0	250	38	22	10	28	1.87
50895154--50895384	54	4.3	54	82	6	240	38	20	10	29	1.87
50895859--50895884	11	2.4	11	100	0	52	26	0	19	53	1.45
50901405--50901511	27	3.9	28	83	3	112	33	20	23	22	1.97
50908487--50908561	36	2.1	36	97	0	141	32	0	20	48	1.50
50918936--50919111	46	3.8	46	78	8	196	19	19	29	31	1.97
50918933--50919104	93	1.8	93	92	2	292	20	19	29	30	1.97
50926197--50926275	37	2.1	37	86	4	106	25	29	18	26	1.98
50926394--50926585	47	4.1	47	88	0	276	27	31	9	32	1.88
50929982--50930098	40	2.9	40	90	0	180	24	25	22	27	2.00
50929995--50930172	40	4.4	40	81	5	168	24	25	22	27	2.00
50929982--50930139	80	2.0	80	83	2	201	24	25	21	27	1.99
50930483--50930561	29	2.7	29	82	5	97	26	32	16	24	1.96
50930543--50930645	43	2.4	43	100	0	206	26	35	15	22	1.94
50932499--50932577	37	2.1	37	88	4	115	25	30	18	25	1.98
50932696--50932887	47	4.1	47	91	0	294	27	31	9	31	1.89
50936205--50936309	42	2.5	42	74	1	111	25	17	24	32	1.97
50939752--50940009	40	6.5	40	91	2	369	25	27	24	23	2.00
50942079--50942181	37	2.8	37	92	0	161	23	33	21	22	1.98
50942322--50942611	48	6.0	48	95	0	501	31	28	5	34	1.81
50946244--50946569	40	8.1	40	91	1	492	25	27	21	25	2.00
50947851--50947953	37	2.8	37	92	0	161	23	33	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50957347--50957522	40	4.5	40	88	5	227	23	28	25	23	2.00
50957347--50957522	79	2.2	80	85	6	227	23	28	25	23	2.00
50959650--50959827	27	6.6	27	80	3	160	28	29	16	25	1.97
50959671--50959826	82	1.9	81	84	3	206	28	29	16	25	1.97
50973245--50973297	26	2.0	26	100	0	106	39	15	26	18	1.90
50973331--50973369	16	2.4	17	86	4	53	71	10	17	0	1.12
50976624--50976866	40	6.1	40	82	0	256	33	18	26	21	1.96
50976649--50976708	20	3.0	20	65	11	52	26	18	33	21	1.96
50976635--50976867	120	2.0	118	85	3	315	34	18	26	20	1.96
50981280--50981357	36	2.1	37	90	2	122	24	32	19	24	1.98
50981475--50981951	47	10.1	47	92	3	771	29	30	8	31	1.87
50981475--50981951	96	5.0	96	94	2	797	29	30	8	31	1.87
50981648--50981721	22	3.3	22	64	17	62	28	31	10	29	1.91
50990056--50990178	28	4.4	28	92	2	185	33	27	12	26	1.92
50996980--50997201	40	5.6	40	88	1	313	21	23	28	26	1.99
51005117--51005413	40	7.5	40	89	2	413	23	23	28	24	2.00
51010413--51010460	24	2.0	24	92	8	80	8	27	22	41	1.82
51012193--51012325	46	2.9	46	79	4	160	21	20	30	28	1.98
51016449--51016489	15	2.7	15	96	3	73	24	7	12	56	1.61
51017622--51017732	56	2.0	56	87	3	161	27	13	24	34	1.93
51018401--51018430	6	5.0	6	91	0	51	0	0	36	63	0.95
51020581--51020703	39	3.1	39	79	6	131	32	15	27	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51023026--51023076	25	2.0	25	88	0	75	31	27	17	23	1.97
51024993--51025418	47	9.1	47	93	0	638	34	10	28	26	1.89
51025300--51025375	22	3.3	22	67	25	59	34	10	28	26	1.90
51025400--51025574	46	3.8	46	90	1	244	36	9	30	23	1.87
51027061--51027435	40	9.4	40	95	0	651	25	20	26	26	1.99
51027151--51027257	23	5.2	23	62	25	76	25	18	27	28	1.98
51027463--51027594	57	2.3	57	84	3	169	21	19	30	28	1.98
51028081--51028114	17	2.0	17	100	0	68	35	11	17	35	1.87
51028111--51029270	386	3.0	386	100	0	2320	32	10	21	35	1.88
51031384--51031809	47	9.1	47	92	0	629	34	9	28	26	1.88
51031657--51031728	22	3.1	22	66	24	58	36	8	27	27	1.86
51031791--51031965	46	3.8	46	89	0	251	35	10	30	23	1.88
51033450--51033738	39	7.4	40	95	3	518	25	20	27	26	1.99
51033766--51033897	57	2.3	57	84	3	169	21	19	30	28	1.98
51034384--51034417	17	2.0	17	100	0	68	35	11	17	35	1.87
51037696--51038121	47	9.1	47	92	0	629	34	11	28	26	1.90
51037816--51037937	22	5.3	22	62	30	58	31	13	30	25	1.93
51038095--51038276	91	2.0	92	89	1	276	34	9	32	24	1.87
51038095--51038276	46	4.0	46	91	1	276	34	9	32	24	1.87
51042587--51042648	27	2.3	27	85	0	88	30	22	12	33	1.92
51042597--51042654	27	2.1	27	87	0	80	34	15	15	34	1.89
51043259--51043296	18	2.1	19	85	5	51	21	2	18	57	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51047113--51047360	68	3.8	62	73	12	178	29	16	29	24	1.97
51051972--51052104	45	3.0	45	85	0	167	34	27	14	24	1.94
51056830--51057007	27	6.6	27	81	3	169	28	28	15	27	1.96
51065011--51065188	27	6.6	27	82	3	178	29	28	15	27	1.96
51070987--51071060	29	2.6	29	86	4	96	25	31	16	27	1.96
51074608--51074692	27	3.1	27	84	3	109	34	16	16	32	1.91
51092195--51092233	16	2.6	15	88	8	53	43	2	20	33	1.65
51096973--51097131	38	3.9	38	80	13	192	28	25	15	30	1.96
51096973--51097211	86	2.8	86	90	0	354	30	24	14	30	1.94
51099888--51099928	15	2.7	15	80	0	55	53	12	19	14	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316