genome.fa.s1.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  115  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36390810--36390927	43	2.8	43	79	6	150	27	18	23	30	1.98
36390810--36390919	42	2.6	42	81	7	141	28	19	22	30	1.98
36397792--36397828	19	1.9	19	94	0	65	48	0	2	48	1.15
36399211--36399273	30	2.1	30	91	5	101	55	17	4	22	1.60
36399303--36399345	22	2.0	22	81	9	52	58	9	13	18	1.62
36401719--36401848	45	3.0	45	75	8	133	30	27	16	24	1.97
36414327--36414416	27	3.3	27	75	20	89	26	16	20	36	1.93
36414341--36414423	27	3.1	26	86	5	112	22	20	20	36	1.95
36414835--36414919	34	2.5	35	86	1	118	25	18	25	29	1.98
36419381--36419508	28	4.6	28	87	1	168	27	12	28	32	1.93
36419411--36419521	28	4.0	27	87	3	107	30	11	25	32	1.91
36427390--36427511	28	4.4	28	91	1	183	26	13	27	32	1.93
36427414--36427524	28	4.0	27	89	3	134	29	12	25	32	1.93
36429437--36429480	22	2.0	22	86	0	61	43	0	0	56	0.99
36430644--36430695	26	1.9	28	85	14	74	21	15	38	25	1.92
36435739--36435778	21	1.9	21	84	0	53	40	17	27	15	1.89
36451706--36451753	23	2.0	24	84	4	62	31	8	2	58	1.39
36452290--36452354	29	2.2	29	94	0	112	15	21	40	23	1.91
36453989--36454147	42	3.8	42	85	4	214	29	24	14	31	1.95
36455633--36456139	126	4.1	125	81	4	585	37	14	17	29	1.90
36458300--36458330	16	1.9	16	93	0	53	35	22	0	41	1.54
36458297--36458336	20	2.0	20	85	0	53	37	22	0	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36458570--36458722	55	2.8	55	81	5	186	22	25	16	35	1.95
36459310--36459364	27	2.0	27	100	0	110	47	21	0	30	1.51
36465116--36465765	38	17.1	38	88	3	934	38	24	21	15	1.92
36471656--36471698	15	2.8	16	79	10	54	44	0	2	53	1.13
36471540--36472053	120	4.3	120	96	1	937	42	2	5	50	1.38
36471643--36472053	59	6.9	59	68	18	253	42	1	5	50	1.36
36471767--36471818	15	3.6	15	80	12	56	44	0	1	53	1.11
36471887--36471938	15	3.6	15	80	12	56	44	0	1	53	1.11
36472015--36472056	15	2.7	16	82	14	52	45	0	2	52	1.13
36472009--36472047	15	2.7	15	88	7	55	46	0	0	53	1.00
36471991--36472298	156	2.0	156	96	1	564	47	4	2	44	1.39
36472159--36472192	17	2.0	17	88	0	50	47	0	0	52	1.00
36472745--36472809	32	2.0	32	96	0	121	43	20	18	18	1.89
36481623--36481847	49	4.5	49	83	3	263	25	16	27	30	1.97
36494440--36494772	48	6.9	48	82	3	323	25	30	17	27	1.97
36494442--36494721	144	1.9	144	84	2	366	24	30	18	27	1.98
36494441--36494772	144	2.3	144	79	5	364	25	30	17	27	1.97
36494437--36494771	96	3.5	96	82	0	357	25	29	17	27	1.98
36497961--36498024	27	2.4	27	86	0	92	34	15	25	25	1.95
36497961--36498039	27	2.9	27	84	3	79	34	17	22	25	1.96
36498180--36498313	27	5.0	27	82	1	153	26	18	19	35	1.95
36501231--36501268	19	2.0	20	85	15	53	36	0	23	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36504565--36504741	27	6.6	27	83	4	196	26	15	28	29	1.96
36504566--36504720	82	1.9	80	86	5	222	26	15	28	29	1.96
36504565--36504741	55	3.3	53	82	4	194	26	15	28	29	1.96
36504562--36504741	82	2.2	80	82	3	218	26	15	27	30	1.96
36508332--36508399	16	4.2	16	96	0	118	27	0	36	35	1.58
36508380--36508474	45	2.1	44	88	1	136	34	5	27	32	1.79
36508636--36508670	18	2.0	17	94	5	61	51	0	0	48	1.00
36508832--36508903	28	2.6	28	84	8	85	51	4	0	44	1.20
36509071--36509115	22	2.0	22	100	0	90	42	13	0	44	1.43
36516147--36516323	27	6.6	27	83	4	196	26	15	28	29	1.96
36516148--36516302	82	1.9	80	86	5	222	26	15	28	29	1.96
36516147--36516323	55	3.3	53	82	4	194	26	15	28	29	1.96
36516144--36516323	82	2.2	80	82	3	218	26	15	27	30	1.96
36523200--36523472	48	5.7	48	75	4	219	26	29	17	27	1.97
36523255--36523482	96	2.4	96	81	0	267	26	29	15	28	1.96
36526766--36527134	96	3.9	94	93	2	639	31	8	30	30	1.87
36526766--36527134	47	7.8	47	93	2	639	31	8	30	30	1.87
36526766--36527478	141	5.1	141	90	5	1060	31	8	30	29	1.88
36527100--36527166	32	2.1	32	100	0	134	26	11	29	31	1.92
36527053--36527213	79	2.0	79	96	0	295	29	10	29	29	1.90
36527132--36527478	47	7.4	47	93	0	550	31	9	30	28	1.89
36527601--36527675	37	2.0	37	87	5	107	22	20	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36529919--36530079	34	4.6	35	88	1	227	39	29	11	18	1.87
36529919--36530079	69	2.3	70	88	3	227	39	29	11	18	1.87
36534959--36535081	43	2.8	43	98	1	237	34	11	19	34	1.88
36541209--36541316	56	1.9	56	92	0	180	36	24	11	28	1.89
36550326--36550390	27	2.4	27	89	0	94	33	18	21	26	1.96
36562843--36562874	14	2.4	14	90	10	50	21	9	28	40	1.84
36562842--36563078	49	4.7	49	74	8	192	26	16	25	32	1.96
36562891--36563073	101	1.8	101	89	3	289	27	18	25	29	1.98
36563283--36563312	16	1.9	15	93	6	51	43	0	23	33	1.54
36565492--36565669	27	6.6	27	84	3	205	29	28	15	26	1.96
36565513--36565668	82	1.9	81	88	3	233	29	28	15	26	1.96
36573435--36573612	27	6.6	27	84	3	205	29	28	15	26	1.96
36573456--36573611	82	1.9	81	88	3	233	29	28	15	26	1.96
36583489--36583519	13	2.4	13	100	0	62	32	35	25	6	1.82
36589396--36589529	49	2.7	49	78	6	135	25	17	25	32	1.97
36589734--36589763	16	1.9	15	93	6	51	43	0	23	33	1.54
36592735--36592873	27	5.1	27	82	5	165	35	22	24	17	1.96
36592751--36592875	54	2.3	54	92	0	205	35	22	24	17	1.95
36594472--36594579	26	4.2	26	90	4	173	36	23	7	33	1.83
36598373--36598402	11	2.9	10	90	9	51	56	0	10	33	1.32
36599499--36599629	27	4.9	26	76	11	106	34	20	25	19	1.96
36599493--36599632	54	2.6	54	87	2	183	35	20	25	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36601227--36601334	26	4.2	26	92	0	180	36	24	6	33	1.81
36602687--36602795	26	4.2	26	92	0	182	36	23	6	33	1.81
36604148--36604229	26	3.2	26	91	0	137	35	23	7	34	1.82
36605582--36605689	26	4.2	26	92	0	180	37	24	6	32	1.81
36607042--36607123	26	3.2	26	91	0	137	35	23	7	34	1.82
36608760--36608937	27	6.6	27	81	5	171	29	26	15	28	1.96
36608780--36608936	82	1.9	81	85	3	217	29	26	15	28	1.96
36611711--36611818	26	4.2	26	92	0	180	37	24	6	32	1.81
36613171--36613278	26	4.2	26	90	0	171	37	25	5	32	1.79
36614630--36614711	26	3.2	26	91	0	128	36	24	7	31	1.83
36627385--36627519	66	2.0	66	100	0	270	35	9	23	31	1.87
36632742--36632889	38	3.8	38	82	8	165	44	10	9	35	1.72
36637192--36637341	42	3.6	41	82	4	167	31	18	22	28	1.97
36639624--36639732	37	2.9	37	90	0	155	26	29	19	24	1.98
36639936--36640129	47	4.1	47	89	0	280	27	29	10	32	1.90
36640029--36640100	22	3.1	22	64	24	58	23	29	13	33	1.93
36653807--36653839	16	2.0	17	88	5	50	84	6	0	9	0.76
36655131--36655203	27	2.7	27	80	14	80	32	6	1	58	1.33
36668786--36668834	25	2.0	25	87	0	71	36	22	14	26	1.92
36668874--36668950	21	3.7	20	80	1	73	33	14	15	36	1.88
36668874--36668948	11	7.1	11	76	7	66	34	14	14	36	1.87
36668879--36668934	10	5.4	10	77	8	58	33	12	17	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36668981--36669049	25	2.8	25	86	0	93	24	21	23	30	1.99
36669006--36669078	25	3.0	25	76	13	71	27	19	21	31	1.97
36670094--36670146	26	2.0	26	92	0	88	28	13	5	52	1.62
36678529--36678643	44	2.6	44	92	0	194	26	15	23	33	1.95
36678601--36678727	56	2.3	56	88	2	193	22	13	28	36	1.92
36681735--36681918	40	4.7	40	82	9	218	25	27	22	25	2.00
36681735--36681918	79	2.3	80	84	8	225	25	27	22	25	2.00
36689431--36689655	40	5.7	40	85	5	260	26	28	21	24	1.99
36689433--36689655	119	1.9	120	82	6	283	26	27	21	24	1.99
36696514--36696562	22	2.2	21	79	10	53	46	2	2	48	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316