genome.fa.s1.2.7.7.80.10.50.1000.276.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  276  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91505001--91505170	46	3.7	45	74	14	159	30	28	19	21	1.97
91505055--91505195	46	3.0	45	72	20	112	29	28	19	22	1.98
91507070--91507223	30	5.1	30	81	4	195	16	29	30	23	1.96
91508933--91508959	13	2.1	13	100	0	54	14	33	37	14	1.88
91512060--91512086	8	3.4	8	100	0	54	66	22	11	0	1.22
91512899--91512964	28	2.4	27	80	5	69	21	21	22	34	1.96
91513851--91513899	18	2.7	17	84	12	62	73	0	2	24	0.94
91513849--91513906	23	2.4	25	81	16	68	77	0	1	20	0.86
91513856--91513902	23	2.0	24	87	8	69	74	0	2	23	0.93
91519215--91519252	14	2.8	14	96	4	69	18	23	28	28	1.98
91520621--91520792	93	1.8	93	95	2	310	29	29	19	20	1.97
91520614--91520789	46	3.8	46	79	14	209	30	29	19	20	1.97
91525584--91525621	19	2.0	20	85	15	53	39	21	0	39	1.53
91525850--91526017	46	3.6	46	76	13	191	27	27	22	22	1.99
91525851--91526021	93	1.8	93	93	0	297	28	28	22	21	1.99
91534262--91534587	48	6.8	48	85	0	427	28	17	23	30	1.97
91534262--91534587	96	3.4	96	93	0	517	28	17	23	30	1.97
91534604--91534704	37	2.8	37	81	1	123	31	16	25	25	1.97
91536709--91536768	25	2.3	27	83	13	72	61	1	8	28	1.34
91536840--91536920	42	1.9	42	84	0	108	64	1	2	32	1.15
91538557--91538995	44	10.2	43	71	12	138	26	25	16	31	1.96
91538511--91538861	126	2.7	126	90	2	531	26	25	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91538814--91538926	41	2.6	44	82	9	135	25	27	17	29	1.98
91539344--91539397	22	2.5	22	93	0	90	20	24	11	44	1.83
91549227--91549317	46	2.0	45	97	2	173	23	17	24	35	1.95
91554863--91554901	12	3.0	13	81	11	53	46	0	15	38	1.46
91555001--91555048	12	4.0	12	83	5	53	62	0	8	29	1.24
91555021--91555062	11	3.8	11	81	9	50	69	0	4	26	1.08
91558008--91558037	15	2.0	15	93	0	51	10	20	13	56	1.65
91562651--91562729	6	14.8	5	83	12	72	74	0	6	18	1.02
91562651--91562729	17	4.9	16	76	15	74	74	0	6	18	1.02
91562682--91562729	11	4.4	11	89	10	71	77	0	6	16	0.97
91574381--91574408	1	28.0	1	100	0	56	100	0	0	0	0.00
91594411--91594474	20	3.2	20	74	12	76	18	32	14	34	1.91
91594418--91594482	21	3.1	21	72	12	71	21	26	15	36	1.93
91594391--91594580	40	4.7	40	91	0	245	21	28	16	33	1.95
91597326--91597503	27	6.6	27	83	3	205	26	15	28	29	1.96
91597327--91597482	82	1.9	81	88	3	233	26	15	28	29	1.96
91597323--91597503	82	2.2	81	83	2	229	27	15	27	29	1.96
91599145--91599206	28	2.2	28	94	0	106	27	9	29	33	1.88
91604617--91604706	42	2.1	43	83	8	112	25	18	22	33	1.97
91604566--91604706	43	3.3	44	76	13	114	25	17	24	32	1.97
91608314--91608469	35	4.5	35	78	3	152	43	16	9	30	1.80
91610272--91610309	20	1.9	20	84	10	51	39	7	5	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91618021--91618140	44	2.6	46	83	6	145	22	20	26	30	1.98
91626124--91626270	41	3.6	41	80	5	163	22	28	15	33	1.95
91626119--91626270	82	1.9	82	84	5	209	22	29	15	32	1.94
91630142--91630177	17	2.1	17	89	0	54	44	11	0	44	1.39
91630303--91630337	4	9.0	4	87	6	54	48	0	0	51	1.00
91634370--91634413	20	2.2	20	87	0	61	27	13	27	31	1.94
91634376--91634419	20	2.2	20	83	0	52	29	13	27	29	1.94
91641258--91641312	27	2.0	27	100	0	110	21	3	36	38	1.71
91645964--91646096	69	1.9	70	89	1	205	31	15	16	36	1.90
91647484--91647743	47	5.6	47	92	0	407	33	8	30	28	1.86
91648762--91648787	12	2.2	12	100	0	52	19	7	15	57	1.62
91653755--91653833	37	2.1	37	86	4	106	25	30	17	26	1.97
91653952--91654303	47	7.4	47	90	2	524	29	29	8	32	1.87
91653952--91654303	96	3.7	96	90	2	532	29	29	8	32	1.87
91654004--91654299	143	2.1	144	95	1	540	31	29	7	32	1.85
91656753--91656811	30	1.9	31	86	10	86	47	3	20	28	1.66
91658819--91658922	44	2.3	45	86	1	138	36	18	24	21	1.95
91658904--91659121	46	4.7	46	90	0	337	41	15	22	19	1.89
91668666--91668707	20	2.1	20	82	8	50	28	9	9	52	1.65
91669104--91669147	2	21.5	2	95	4	79	2	47	0	50	1.13
91670486--91670522	17	2.2	18	85	9	51	21	0	27	51	1.48
91678828--91678857	5	5.8	5	96	4	51	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91678990--91679032	22	2.0	22	85	0	59	6	32	2	58	1.38
91678990--91679039	6	8.8	6	87	10	52	10	32	2	56	1.44
91685251--91685280	11	2.9	10	90	9	51	76	0	0	23	0.78
91685364--91685401	9	3.7	10	86	13	51	34	0	0	65	0.93
91688664--91688713	11	4.7	11	80	9	59	30	34	0	36	1.58
91688663--91688713	20	2.4	21	87	6	68	29	33	0	37	1.58
91689873--91689899	7	3.9	7	100	0	54	25	0	14	59	1.36
91690924--91691423	116	4.3	116	96	0	885	40	3	9	46	1.53
91691170--91691355	61	3.1	61	69	20	194	39	3	9	47	1.52
91694448--91694972	126	4.2	126	89	2	817	27	21	17	33	1.96
91695060--91695256	95	2.0	98	82	7	242	42	16	1	39	1.58
91697160--91697298	27	5.0	27	72	16	104	42	0	13	43	1.44
91697192--91697256	31	2.1	31	85	8	87	47	0	6	46	1.27
91697671--91697712	14	3.1	14	72	6	50	52	4	11	30	1.59
91697406--91697993	125	4.7	126	87	2	753	39	14	17	28	1.89
91699732--91699757	8	3.2	8	100	0	52	26	0	0	73	0.84
91699812--91699837	13	2.0	13	100	0	52	38	0	0	61	0.96
91701321--91701359	18	2.1	19	85	4	53	38	0	5	56	1.22
91704226--91704451	99	2.4	93	81	13	241	23	29	19	27	1.98
91704227--91704545	95	3.3	98	78	13	285	24	29	19	27	1.98
91704227--91704549	48	6.8	47	71	13	216	23	29	19	27	1.98
91706470--91706753	128	2.2	129	86	1	376	42	12	16	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91706850--91706921	25	2.9	25	83	4	92	55	2	20	20	1.56
91723602--91723639	14	2.7	14	100	0	76	57	7	26	7	1.54
91728497--91729249	72	10.1	73	79	10	664	30	16	19	33	1.94
91728497--91729255	150	5.1	145	80	9	751	30	16	19	33	1.94
91728509--91729255	222	3.3	219	82	9	869	30	16	19	33	1.94
91729034--91729255	73	3.1	72	84	5	286	28	17	21	32	1.96
91729242--91729270	14	2.0	15	93	6	51	13	31	6	48	1.69
91729114--91729439	174	1.9	171	85	6	442	29	17	21	30	1.97
91731513--91731563	3	16.3	3	80	15	59	37	0	0	62	0.95
91752640--91752683	20	2.3	19	88	4	61	36	0	0	63	0.95
91752924--91752969	4	11.2	4	82	13	58	73	0	23	2	0.94
91753081--91753129	26	1.9	26	84	12	66	28	2	12	57	1.46
91760494--91760565	33	2.2	33	85	5	92	26	12	43	18	1.85
91762595--91762757	50	3.3	47	68	11	130	58	15	2	23	1.50
91762582--91762905	99	3.2	99	81	12	400	58	14	1	25	1.47
91762682--91762972	110	2.7	107	86	5	404	59	14	1	24	1.45
91762495--91762905	209	2.0	207	88	3	621	56	15	1	26	1.49
91764088--91764181	28	3.2	28	72	21	93	26	28	18	26	1.98
91764046--91764219	60	2.9	59	80	11	183	26	25	19	28	1.99
91764210--91764255	20	2.3	20	85	3	67	28	30	17	23	1.97
91768276--91768331	20	2.8	20	83	2	69	33	28	16	21	1.95
91772793--91772837	22	2.0	22	95	0	81	28	8	6	55	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91775638--91775748	40	2.8	41	84	5	147	27	20	17	35	1.95
91777040--91777132	28	3.2	28	76	14	84	24	0	26	48	1.51
91777070--91777132	21	3.0	21	76	2	54	25	0	23	50	1.49
91777422--91778117	41	17.2	40	85	4	853	24	16	24	34	1.96
91777422--91778117	81	8.6	81	86	3	902	24	16	24	34	1.96
91779448--91779488	12	3.2	13	86	10	57	31	0	0	68	0.90
91781907--91782031	41	3.0	41	90	4	191	36	24	20	19	1.95
91782000--91782056	25	2.3	25	96	0	105	40	24	15	19	1.90
91788344--91788447	55	1.9	55	80	4	120	27	31	25	14	1.95
91796773--91796817	20	2.3	20	88	3	65	28	17	26	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316