genome.fa.s1.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  118  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37304685--37305121	143	3.1	143	91	3	693	31	8	30	29	1.86
37305239--37305317	37	2.1	37	88	0	113	25	18	30	25	1.98
37311355--37311443	27	3.3	27	82	6	108	22	17	21	38	1.94
37312214--37312406	107	1.8	103	95	4	350	45	3	6	44	1.47
37313098--37313144	21	2.2	21	85	7	60	48	2	2	46	1.25
37316442--37316541	50	2.0	50	98	0	191	30	19	20	31	1.96
37322348--37322433	29	3.0	29	81	3	95	27	27	13	30	1.95
37329276--37329308	7	4.9	7	92	7	59	27	0	57	15	1.38
37341981--37342018	15	2.6	15	91	4	60	15	13	10	60	1.59
37342645--37342673	15	2.0	15	93	6	51	10	13	20	55	1.68
37349103--37349320	27	8.1	27	82	5	235	38	19	10	32	1.85
37351091--37351313	79	2.8	79	84	9	269	24	27	22	25	2.00
37351091--37351313	39	5.7	40	86	8	266	24	27	22	25	2.00
37372855--37372945	46	2.0	46	91	0	146	27	30	7	34	1.85
37372964--37373085	22	5.3	22	65	30	67	24	27	13	35	1.92
37372919--37373161	47	5.1	48	88	5	300	25	27	11	34	1.91
37372961--37373161	47	4.2	47	92	3	314	24	27	12	35	1.92
37372919--37373161	96	2.5	96	85	6	282	25	27	11	34	1.91
37394153--37394371	20	10.9	20	70	0	87	18	18	21	41	1.91
37394156--37394352	60	3.3	60	81	0	232	18	18	21	41	1.91
37398683--37398793	55	2.0	55	98	0	213	36	13	23	26	1.92
37405595--37405714	48	2.6	46	85	2	150	29	23	12	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37411538--37411656	48	2.5	47	81	4	141	28	21	14	36	1.92
37429036--37429127	45	2.0	45	97	0	175	28	8	29	33	1.87
37438249--37438297	3	16.7	3	79	12	57	38	0	2	59	1.09
37438248--37438297	13	3.7	13	83	5	64	40	0	2	58	1.10
37438249--37438295	16	2.9	16	74	25	53	38	0	2	59	1.09
37441514--37441698	79	2.3	80	80	8	207	27	28	21	23	1.99
37441495--37441698	40	5.1	40	80	8	220	26	28	21	24	1.99
37449070--37449273	40	5.1	40	81	7	166	25	28	21	24	1.99
37449091--37449273	79	2.3	79	83	7	210	26	28	21	23	1.99
37451243--37451272	14	2.1	14	100	0	60	36	13	0	50	1.42
37451431--37451482	6	8.7	6	95	0	95	48	0	1	50	1.12
37451698--37451756	27	2.1	28	96	3	111	28	3	16	50	1.61
37454929--37454967	3	13.0	3	100	0	78	33	0	0	66	0.92
37455645--37455719	31	2.4	30	84	8	96	53	6	1	38	1.36
37463872--37463903	15	2.3	15	89	10	50	18	28	28	25	1.98
37465450--37465572	39	3.1	39	85	2	174	44	27	15	12	1.82
37475773--37475808	17	2.1	18	89	5	56	41	5	5	47	1.50
37475969--37476025	30	1.9	30	85	0	78	45	10	8	35	1.70
37477173--37477204	11	2.9	11	100	0	64	25	18	28	28	1.98
37486079--37486296	40	5.5	39	79	9	194	25	22	27	25	2.00
37486079--37486263	79	2.3	81	82	7	218	24	22	27	25	2.00
37486080--37486296	79	2.7	78	77	10	210	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37493423--37493479	19	2.9	19	75	21	55	21	0	7	71	1.08
37497414--37497452	21	1.9	21	84	5	53	43	0	2	53	1.14
37499105--37499243	43	3.2	43	78	2	136	31	25	13	28	1.94
37499770--37499827	28	2.0	29	96	3	109	31	1	24	43	1.64
37499762--37499827	28	2.4	28	92	5	107	33	1	24	40	1.64
37500900--37501090	43	4.4	43	83	1	213	25	16	25	32	1.96
37506074--37506248	46	3.7	46	81	14	189	29	21	27	21	1.98
37506072--37506284	92	2.3	91	81	9	238	28	20	28	23	1.99
37511521--37511787	47	5.6	47	94	0	444	29	11	31	26	1.91
37527161--37527378	40	5.5	40	87	4	291	22	23	29	25	1.99
37544838--37544878	21	1.9	22	85	5	57	31	21	4	41	1.74
37545285--37545366	28	2.9	28	92	0	128	26	29	12	31	1.92
37546847--37547120	27	10.2	26	77	8	214	38	20	10	31	1.86
37546847--37547152	107	2.8	107	83	4	350	37	19	10	31	1.86
37546847--37547152	54	5.7	54	76	9	218	37	19	10	31	1.86
37546843--37547139	80	3.7	80	74	4	224	38	19	10	31	1.86
37546968--37547163	27	7.3	27	77	6	103	38	18	12	30	1.88
37548803--37548924	6	19.8	6	74	14	97	48	16	18	16	1.82
37548803--37548924	19	6.6	18	76	13	97	48	16	18	16	1.82
37548798--37548902	43	2.4	43	83	1	138	48	17	18	16	1.81
37548803--37548924	25	5.2	25	73	16	109	48	16	18	16	1.82
37549027--37549180	67	2.3	67	96	0	281	31	22	27	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37549406--37549760	27	13.3	27	82	3	360	25	18	19	36	1.94
37549765--37550182	27	15.4	27	80	5	342	36	8	22	32	1.85
37549765--37550182	54	7.7	54	79	4	378	36	8	22	32	1.85
37549833--37549964	28	4.8	28	77	10	112	29	10	21	37	1.87
37550108--37550303	27	7.3	26	76	6	97	34	8	19	37	1.83
37550161--37550335	54	3.3	53	76	7	183	32	9	19	38	1.84
37550162--37550328	27	6.2	27	74	8	119	32	9	18	39	1.83
37556971--37557017	22	2.3	20	85	10	60	51	8	6	34	1.58
37556979--37557027	22	2.2	22	100	0	98	48	10	4	36	1.56
37557096--37557140	19	2.4	18	85	14	56	33	15	2	48	1.57
37557309--37557464	43	3.6	42	72	8	127	30	26	16	26	1.96
37561005--37561045	20	2.1	20	86	4	57	48	24	0	26	1.51
37564423--37564556	46	2.9	45	83	8	173	27	20	29	21	1.98
37564433--37564592	46	3.4	46	77	10	164	28	20	29	21	1.98
37564617--37564794	49	3.7	49	77	7	159	29	18	26	25	1.98
37565210--37565281	30	2.4	30	88	4	110	27	6	15	50	1.69
37566041--37566080	21	2.0	20	90	5	62	10	27	35	27	1.89
37571325--37571389	31	2.1	31	100	0	130	15	30	3	50	1.59
37572188--37572487	46	6.4	48	71	10	185	26	18	30	25	1.98
37572379--37572495	49	2.4	49	81	2	128	29	17	28	23	1.97
37577821--37577866	20	2.4	19	82	7	56	71	2	2	23	1.08
37582201--37582383	55	3.4	53	75	3	134	21	24	18	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37582201--37582357	55	2.9	53	77	2	154	19	24	19	36	1.94
37584743--37584900	68	2.3	68	95	0	280	24	30	14	31	1.95
37584743--37584926	68	2.7	67	89	5	246	23	28	14	33	1.94
37591014--37591142	46	2.8	46	91	0	204	20	21	27	29	1.98
37605268--37605303	18	2.0	18	100	0	72	38	16	33	11	1.84
37612820--37612856	19	1.9	19	94	0	65	64	2	5	27	1.28
37612825--37612879	19	2.9	19	84	12	69	72	0	5	21	1.04
37613719--37613807	44	2.0	44	86	4	126	20	16	23	39	1.92
37617459--37617617	42	3.8	42	85	0	192	29	23	14	32	1.94
37619819--37619859	21	2.0	20	85	4	55	24	26	36	12	1.91
37621101--37621275	49	3.6	49	80	5	160	25	28	19	27	1.99
37623724--37624236	256	2.0	256	98	0	999	43	7	22	27	1.79
37633643--37633680	11	3.5	11	89	7	60	71	0	7	21	1.11
37635149--37635234	42	2.0	42	95	0	154	34	20	17	26	1.95
37662321--37662358	15	2.4	16	86	4	51	65	2	0	31	1.06
37662321--37662355	16	2.2	16	89	0	52	68	2	0	28	1.04
37662830--37662878	16	3.2	16	85	11	75	53	0	16	30	1.43
37662831--37662885	14	3.7	14	90	7	74	49	0	16	34	1.46
37663072--37663116	5	9.0	5	85	9	56	73	2	2	22	1.05
37663219--37663261	17	2.4	19	88	11	65	51	9	6	32	1.61
37666488--37666547	24	2.5	24	81	10	70	5	25	1	68	1.19
37668697--37668721	7	3.6	7	100	0	50	12	0	12	76	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37668836--37668861	13	2.0	13	100	0	52	38	0	0	61	0.96
37671061--37671093	15	2.2	15	100	0	66	36	0	30	33	1.58
37673560--37673639	40	2.0	40	100	0	160	37	5	22	35	1.76
37675239--37675422	100	1.8	100	90	2	298	29	25	18	27	1.98
37675247--37675428	49	3.7	50	80	5	208	29	25	17	26	1.98
37695545--37695693	40	3.8	40	84	10	193	25	23	24	26	2.00
37703510--37703695	41	4.6	41	87	3	243	25	24	25	24	2.00
37703512--37703665	81	1.9	82	89	4	240	24	24	25	25	2.00
37708816--37708939	46	2.6	48	91	3	189	29	17	28	25	1.98
37708813--37708974	46	3.4	46	80	10	157	29	19	27	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316