genome.fa.s1.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  212  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69328223--69328333	38	2.9	38	93	0	186	33	24	21	20	1.97
69331789--69331912	43	2.9	43	78	3	106	31	23	17	27	1.97
69333848--69333910	9	6.9	9	75	10	56	60	1	4	33	1.27
69334067--69334160	10	9.3	10	70	18	52	61	0	5	32	1.18
69334092--69334164	30	2.4	30	76	13	78	61	0	2	35	1.10
69334456--69334503	18	2.8	17	81	12	53	58	0	6	35	1.23
69334524--69334579	27	2.1	27	86	6	78	35	0	3	60	1.14
69337026--69337069	17	2.7	16	82	6	52	34	0	4	61	1.16
69342279--69342370	39	2.4	39	90	0	139	25	29	25	20	1.99
69342346--69342394	24	2.0	24	96	0	89	28	26	22	22	1.99
69342307--69342433	63	2.0	63	93	0	218	25	28	24	22	1.99
69342365--69342539	39	4.5	39	91	0	296	24	29	24	21	1.99
69342279--69342471	102	1.9	102	93	0	332	24	29	24	21	1.99
69347644--69347710	10	6.6	10	81	6	73	31	19	11	37	1.88
69347644--69347710	21	3.3	21	85	4	84	31	19	11	37	1.88
69349551--69349587	18	2.0	20	89	10	60	48	16	0	35	1.46
69355536--69355589	25	2.2	24	90	6	90	25	18	20	35	1.95
69355635--69355695	21	3.0	21	82	2	70	34	19	11	34	1.88
69355635--69355695	10	5.9	10	75	5	59	34	19	11	34	1.88
69364807--69364921	27	4.3	26	81	7	124	35	20	22	20	1.96
69365339--69365384	8	5.8	8	92	0	74	10	26	23	39	1.88
69372624--69372706	28	3.1	28	86	5	109	37	21	21	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69382214--69382470	40	6.5	39	81	8	247	27	26	20	25	1.99
69400782--69400810	13	2.3	13	94	5	51	3	6	0	89	0.57
69403187--69403221	17	2.1	17	94	0	61	45	11	14	28	1.79
69413036--69413092	30	1.9	30	92	0	96	31	26	7	35	1.83
69415128--69415234	29	3.7	29	79	1	115	38	21	18	21	1.94
69419250--69419370	48	2.5	48	87	4	136	29	27	16	26	1.97
69420564--69420667	42	2.5	43	79	6	106	29	17	23	29	1.97
69422042--69422161	40	3.1	40	61	27	96	26	7	29	36	1.84
69422735--69422914	48	3.8	48	83	0	225	29	26	17	26	1.97
69422735--69422917	96	1.9	96	90	0	294	29	26	16	27	1.97
69428687--69428750	30	2.1	30	94	0	110	34	23	21	20	1.97
69437626--69437761	29	4.8	29	80	4	143	38	24	15	22	1.92
69437626--69437718	28	3.2	28	84	6	98	39	24	17	18	1.91
69444675--69444769	38	2.5	38	96	0	172	23	24	16	35	1.95
69444976--69445073	25	3.9	25	88	5	128	30	20	24	24	1.98
69445131--69445196	20	3.3	20	91	8	109	34	18	10	36	1.85
69445131--69445185	9	5.5	11	71	20	57	34	18	10	36	1.86
69446676--69446926	27	9.3	27	81	4	283	29	22	8	39	1.83
69446676--69446926	81	3.1	80	90	1	385	29	22	8	39	1.83
69446958--69447108	27	5.6	27	84	6	191	43	21	7	27	1.79
69446925--69447080	54	2.9	54	85	3	181	40	19	10	29	1.85
69447086--69447171	27	3.1	27	76	17	95	39	16	9	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69447348--69447444	25	3.8	26	95	1	162	25	24	23	25	2.00
69447348--69447444	51	1.9	51	91	4	160	25	24	23	25	2.00
69447589--69447680	42	2.2	42	94	0	157	28	14	21	35	1.92
69454220--69454371	27	5.6	27	93	3	241	26	13	28	30	1.94
69454220--69454371	55	2.8	55	94	0	259	26	13	28	30	1.94
69461063--69461136	29	2.6	29	89	4	105	25	16	32	25	1.96
69469155--69469228	29	2.6	29	86	4	96	27	16	31	25	1.96
69472294--69472477	40	4.7	40	83	6	216	25	28	21	24	1.99
69472300--69472477	79	2.2	81	80	8	206	24	28	21	24	1.99
69473715--69473767	23	2.3	23	84	9	65	3	20	1	73	1.08
69480307--69480491	79	2.3	80	80	8	216	25	28	22	24	1.99
69480307--69480491	40	4.7	40	83	6	225	25	28	22	24	1.99
69481734--69481787	23	2.3	23	84	6	65	3	20	1	74	1.07
69486821--69486948	46	2.8	46	96	0	229	19	22	29	28	1.98
69503869--69503924	27	2.0	27	82	3	67	44	1	0	53	1.11
69515687--69515758	36	2.0	36	100	0	144	25	5	5	63	1.38
69518470--69518653	78	2.3	81	81	9	218	25	27	22	23	2.00
69518451--69518653	40	5.1	40	81	9	229	25	27	22	24	2.00
69519888--69519931	23	1.9	23	86	9	63	6	18	2	72	1.17
69526456--69526640	40	4.7	40	82	6	216	25	27	23	24	2.00
69526456--69526640	79	2.3	81	80	8	209	25	27	23	24	2.00
69527879--69527924	24	1.9	24	86	8	67	6	17	2	73	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69531211--69531292	27	3.0	28	81	3	103	30	19	20	29	1.97
69531285--69531591	27	11.4	27	76	4	217	40	20	7	31	1.81
69531829--69531946	41	2.9	41	84	0	164	22	20	29	27	1.98
69532098--69532141	22	2.2	20	84	12	54	25	25	18	31	1.97
69532333--69532376	22	2.0	22	86	0	61	13	15	25	45	1.83
69536797--69536915	28	4.3	28	72	13	95	30	18	19	31	1.96
69538522--69538562	20	2.0	21	85	4	57	48	12	21	17	1.79
69544189--69544215	13	2.1	13	100	0	54	14	37	33	14	1.88
69552178--69552377	100	2.0	100	99	0	391	47	14	18	20	1.82
69555271--69555599	108	3.1	107	80	6	371	20	17	21	41	1.91
69555287--69555599	27	11.7	27	83	4	321	19	16	22	40	1.91
69565220--69565283	32	2.0	32	100	0	128	34	21	9	34	1.86
69566260--69566440	48	3.8	48	79	1	184	28	28	18	25	1.98
69578847--69578881	13	2.8	12	83	8	52	31	11	0	57	1.34
69578984--69579029	22	2.1	22	88	11	69	32	0	2	65	1.05
69579053--69579092	21	2.0	20	90	5	62	42	0	2	55	1.13
69579002--69579157	60	2.6	58	77	13	156	42	0	4	52	1.26
69579331--69579386	16	3.5	16	82	0	67	28	23	3	44	1.70
69579333--69579402	32	2.2	32	92	0	113	30	25	2	41	1.70
69579349--69579402	16	3.4	16	86	0	81	31	29	1	37	1.68
69588285--69588382	42	2.3	43	81	13	123	30	14	21	33	1.93
69594912--69595169	46	5.5	48	75	12	191	25	28	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69598681--69598782	27	3.8	27	83	6	127	32	23	6	37	1.81
69598718--69598792	27	2.8	27	82	6	64	36	25	5	33	1.79
69598764--69598845	27	3.0	26	73	7	74	40	23	9	26	1.85
69598775--69598902	54	2.4	54	82	5	152	41	20	10	28	1.84
69598775--69598903	27	4.8	27	80	5	136	41	20	10	27	1.84
69598801--69598927	27	4.7	27	81	3	130	43	21	7	28	1.78
69598939--69598990	27	1.9	27	92	0	86	40	11	11	36	1.78
69599919--69599984	25	2.6	25	87	0	96	18	27	27	27	1.98
69600132--69600265	42	3.2	42	95	2	243	29	14	20	35	1.93
69600289--69600372	31	2.7	31	94	1	143	27	16	27	28	1.97
69610122--69610188	35	1.9	35	93	0	116	23	10	23	41	1.85
69610126--69610213	35	2.5	35	83	3	106	25	10	22	42	1.85
69610135--69610265	70	1.9	70	81	0	163	29	10	19	41	1.85
69616070--69616149	38	2.1	38	90	0	124	20	22	28	28	1.98
69616142--69616296	43	3.6	43	89	0	238	11	22	32	33	1.90
69616121--69616309	43	4.4	43	85	1	229	13	21	32	32	1.92
69618483--69618666	46	3.9	47	81	7	194	24	29	17	28	1.97
69624803--69624834	16	2.0	16	93	0	55	34	6	21	37	1.79
69629971--69630042	29	2.5	29	79	0	81	36	12	13	37	1.83
69630105--69630224	29	4.2	29	72	6	82	23	17	20	39	1.92
69631661--69631736	38	2.0	38	87	5	109	14	18	28	38	1.90
69632508--69632532	12	2.1	12	100	0	50	28	32	24	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69647994--69648041	16	3.1	16	84	3	62	52	22	16	8	1.71
69648257--69648345	28	3.1	29	83	4	110	28	13	30	28	1.94
69652675--69652711	18	2.1	18	100	0	74	56	10	0	32	1.34
69652938--69652974	18	2.1	18	89	0	56	59	2	0	37	1.12
69654690--69654733	21	2.0	23	86	8	65	43	11	0	45	1.40
69654952--69654988	17	2.2	16	90	4	56	43	0	0	56	0.99
69655070--69655156	33	2.6	33	80	10	90	49	0	1	49	1.08
69666314--69666456	72	2.0	72	98	0	277	34	9	25	30	1.88
69666337--69666449	36	3.1	36	66	22	101	38	9	23	29	1.86
69667000--69667167	48	3.6	45	77	16	173	25	17	29	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316