genome.fa.s1.2.7.7.80.10.50.1000.283.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  283  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93742897--93742927	3	10.3	3	100	0	62	32	0	0	67	0.91
93744742--93744849	26	4.2	26	90	0	162	35	7	22	35	1.82
93751780--93751882	25	4.2	25	93	6	183	32	6	24	36	1.82
93751780--93751882	48	2.1	51	94	5	185	32	6	24	36	1.82
93764986--93765024	19	2.1	19	85	0	51	71	7	5	15	1.26
93765429--93765542	27	4.1	27	79	10	99	34	22	24	18	1.96
93765645--93765711	27	2.4	28	90	5	109	32	7	25	34	1.84
93772235--93772350	57	2.0	57	98	0	223	23	33	14	28	1.94
93779980--93780059	23	3.3	24	78	5	81	35	15	23	26	1.94
93779980--93780074	47	1.9	51	81	12	119	33	15	23	27	1.95
93785787--93785839	20	2.7	20	84	0	70	37	18	9	33	1.83
93786006--93786108	23	4.6	23	75	10	97	40	19	18	21	1.91
93789853--93789887	18	2.1	17	89	10	54	45	2	14	37	1.59
93791018--93791076	31	1.9	31	100	0	118	30	20	23	25	1.98
93791031--93791122	46	2.0	46	86	0	130	28	23	21	26	1.99
93791078--93791146	31	2.2	31	86	0	93	26	21	26	26	2.00
93792564--93792672	26	4.2	26	92	0	191	33	6	25	34	1.82
93794195--93794234	22	1.9	22	85	10	57	17	15	20	47	1.83
93799554--93799661	26	4.2	26	91	0	171	33	8	22	36	1.84
93807636--93807719	39	2.2	39	86	4	116	35	21	3	39	1.71
93816869--93817022	77	2.0	77	96	0	281	35	11	16	37	1.85
93817165--93817212	20	2.5	19	86	6	62	31	4	0	64	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93820135--93820166	5	6.8	5	86	13	50	78	0	0	21	0.76
93820140--93820166	13	2.1	13	100	0	54	77	0	0	22	0.76
93829037--93829063	12	2.2	12	100	0	54	0	62	0	37	0.95
93829125--93829185	25	2.4	27	76	18	67	4	36	3	55	1.38
93831875--93831908	4	8.0	4	90	9	50	23	0	2	73	0.97
93831858--93831917	22	2.7	22	73	19	61	26	0	6	66	1.16
93834265--93834303	18	2.2	18	85	0	51	61	2	23	12	1.43
93835610--93835643	4	8.0	4	90	9	50	23	0	2	73	0.97
93835593--93835652	22	2.7	22	73	19	61	26	0	6	66	1.16
93837819--93837870	21	2.5	21	90	0	77	32	36	7	23	1.83
93844277--93844363	44	2.0	44	95	0	156	31	12	18	37	1.88
93852385--93852415	12	2.6	12	94	0	53	0	6	12	80	0.89
93863735--93863781	18	2.6	19	83	6	62	34	2	14	48	1.56
93863795--93863887	43	2.2	43	92	3	152	27	6	13	51	1.66
93868473--93868520	19	2.6	19	83	3	62	33	2	16	47	1.58
93868530--93868626	43	2.3	43	87	5	144	31	6	12	49	1.65
93871043--93871081	17	2.3	17	86	0	51	58	2	7	30	1.39
93872099--93872150	19	2.7	19	85	14	63	38	1	3	55	1.29
93872263--93872369	56	2.0	55	87	9	157	44	20	2	31	1.66
93904197--93904277	29	2.7	29	81	9	83	34	6	9	49	1.61
93904669--93904735	32	2.1	32	97	0	125	47	17	11	22	1.80
93909248--93909326	20	4.0	20	72	8	72	40	26	15	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93909254--93909334	39	2.1	39	83	4	101	38	27	16	18	1.92
93920177--93920210	18	1.9	17	88	5	50	50	17	0	32	1.47
93921347--93921383	18	2.1	18	100	0	74	27	16	5	51	1.66
93927942--93928136	93	2.1	92	88	4	286	44	4	4	47	1.41
93928114--93928212	52	2.0	52	80	11	118	45	6	2	46	1.39
93928169--93928202	17	2.0	17	94	0	59	44	5	0	50	1.26
93928174--93928221	17	3.0	16	79	17	55	45	6	2	45	1.40
93928218--93928396	54	3.1	54	65	22	137	41	2	7	49	1.43
93928214--93928401	61	3.1	61	68	14	190	41	2	6	49	1.41
93928262--93928296	18	2.0	17	88	5	52	40	0	0	60	0.97
93928211--93928433	120	1.9	120	97	0	419	42	2	6	49	1.40
93928382--93928416	18	2.0	17	88	5	52	45	0	0	54	0.99
93928245--93928430	54	3.2	54	66	21	142	43	1	4	50	1.33
93928370--93928641	144	1.9	147	94	3	487	47	2	3	46	1.34
93928526--93928560	18	2.0	17	88	5	52	45	0	0	54	0.99
93928722--93928816	45	2.1	45	86	1	129	32	26	5	35	1.79
93928795--93928827	16	2.1	16	94	0	57	30	36	0	33	1.58
93928808--93928850	21	2.0	21	95	0	77	34	37	0	27	1.57
93931624--93931703	42	1.9	41	92	2	133	25	18	16	40	1.91
93934032--93934070	3	13.0	3	100	0	78	66	0	0	33	0.92
93934695--93934734	17	2.3	17	86	4	53	77	5	0	17	0.94
93934689--93934757	27	2.5	27	83	9	86	71	2	0	26	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93934814--93934901	42	2.1	43	83	10	110	35	1	4	59	1.25
93943153--93943206	2	27.0	2	100	0	108	50	0	50	0	1.00
93951205--93951262	21	2.7	23	82	15	79	36	25	24	13	1.92
93951649--93951705	15	3.9	15	90	2	89	50	12	0	36	1.40
93952977--93953003	5	5.4	5	100	0	54	59	0	0	40	0.98
93961744--93961856	40	2.8	40	86	4	149	23	26	23	25	2.00
93969116--93969161	16	3.0	16	78	9	60	23	4	17	54	1.61
93969117--93969161	14	3.0	15	77	9	56	24	4	17	53	1.62
93972714--93972804	34	2.7	34	79	14	98	16	23	7	52	1.69
93975225--93975295	26	2.7	26	84	0	88	30	22	11	35	1.89
93986122--93986158	3	12.3	3	100	0	74	67	0	32	0	0.91
93987271--93987303	16	2.0	17	88	5	50	48	6	9	36	1.60
93989563--93989602	4	10.0	4	88	0	62	22	2	25	50	1.62
93996861--93996899	15	2.5	15	83	4	51	48	7	2	41	1.45
93996855--93996900	16	2.8	17	78	15	53	52	6	4	36	1.47
94000065--94000104	21	2.0	21	90	5	64	22	27	37	12	1.90
94001286--94001559	48	5.7	47	87	3	298	23	27	18	29	1.98
94001425--94001500	23	3.2	23	65	31	61	27	23	18	30	1.98
94001337--94001559	96	2.3	96	89	3	351	24	26	18	30	1.98
94009030--94009302	48	5.7	48	80	3	237	24	27	18	29	1.98
94020949--94021045	40	2.4	41	86	5	144	27	25	14	31	1.95
94029582--94029622	21	2.0	21	90	0	64	26	12	26	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94029590--94029630	21	2.0	21	90	0	64	26	17	24	31	1.97
94033122--94033305	99	1.9	99	98	0	359	32	17	21	28	1.96
94037854--94037893	10	4.0	10	81	12	55	67	2	7	22	1.28
94038086--94038116	14	2.1	15	94	5	55	12	22	0	64	1.27
94042936--94043029	48	2.0	48	93	0	161	11	34	17	37	1.86
94051305--94051558	141	1.8	137	79	9	289	27	21	26	24	1.99
94052813--94052851	21	1.9	21	89	5	62	12	35	28	23	1.91
94057331--94057379	7	7.4	7	80	11	59	16	2	0	81	0.78
94057339--94057383	19	2.4	19	92	0	72	17	2	0	80	0.82
94058374--94058557	96	1.9	97	92	1	307	29	15	23	31	1.95
94059160--94059197	13	2.8	13	88	4	58	42	0	13	44	1.43
94062149--94062176	12	2.3	12	100	0	56	21	32	46	0	1.52
94062261--94062302	21	2.0	21	85	0	57	26	19	2	52	1.58
94066218--94066260	22	2.0	22	81	9	52	30	6	4	58	1.45
94070788--94070825	15	2.4	16	87	12	53	60	5	13	21	1.52
94077542--94077587	23	2.0	22	84	12	58	50	10	2	36	1.50
94081820--94082236	138	3.1	135	89	3	599	45	5	7	41	1.57
94082212--94082360	74	2.0	76	92	2	248	32	14	8	44	1.75
94087246--94087279	17	1.9	18	88	5	52	14	5	17	61	1.52
94087985--94088149	43	3.8	43	68	17	126	25	17	26	30	1.97
94089686--94089793	56	1.9	56	88	0	162	26	13	25	34	1.93
94093175--94093282	55	2.0	55	94	1	191	23	15	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94097755--94097821	33	2.0	33	97	0	125	32	11	22	32	1.90
94102163--94102407	50	4.9	49	85	6	316	23	30	19	26	1.98
94102577--94102660	29	2.9	29	96	0	159	38	21	2	38	1.67
94107430--94107454	12	2.1	12	100	0	50	40	16	0	44	1.47
94114506--94114569	30	2.1	30	82	5	76	54	3	0	42	1.16
94117165--94117344	90	2.0	90	93	0	306	36	20	5	37	1.76
94117559--94117657	24	4.0	25	71	8	69	41	17	18	23	1.90
94118555--94118613	30	2.0	30	83	3	75	27	11	27	33	1.92
94118919--94119373	46	9.7	46	72	14	281	26	18	30	24	1.98
94118919--94119373	94	4.8	94	81	6	489	26	18	30	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316