genome.fa.s1.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  136  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43465719--43465810	29	3.2	29	90	1	141	28	11	17	42	1.85
43468096--43468247	43	3.5	42	76	13	132	26	21	25	26	2.00
43468096--43468255	85	1.9	85	82	8	200	25	21	25	26	2.00
43469740--43470006	47	5.7	44	74	13	173	28	17	29	23	1.97
43469737--43469906	46	3.7	45	81	10	184	27	18	29	24	1.98
43469737--43470003	140	1.9	141	83	3	351	28	17	29	23	1.97
43477416--43477682	46	5.7	47	77	11	237	27	19	29	22	1.98
43477416--43477682	140	1.9	141	83	5	344	27	19	29	22	1.98
43478813--43478852	21	1.9	21	84	0	53	15	35	22	27	1.94
43481355--43481518	42	3.9	42	83	4	213	26	16	26	30	1.97
43481362--43481518	85	1.9	84	86	4	226	27	17	26	29	1.97
43493082--43493112	14	2.2	14	100	0	62	64	0	19	16	1.29
43493949--43494218	46	5.7	47	75	12	207	28	19	28	23	1.98
43501870--43501982	42	2.7	43	79	5	131	28	15	24	30	1.96
43504126--43504247	22	5.3	22	62	21	61	25	29	11	33	1.91
43504098--43504431	47	7.3	47	84	10	383	26	30	10	32	1.89
43504276--43504342	35	1.9	35	100	0	134	23	32	13	29	1.93
43504182--43504425	129	1.9	130	89	1	382	25	31	11	31	1.92
43504229--43504380	82	1.9	82	98	0	295	25	32	12	29	1.92
43508856--43508947	27	3.4	26	79	8	96	26	16	16	41	1.89
43508876--43508958	27	3.1	26	73	13	78	25	15	19	39	1.91
43508938--43509012	27	2.8	27	81	0	96	36	12	16	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43510974--43511086	44	2.6	44	81	5	124	26	16	23	32	1.96
43510989--43511103	44	2.6	44	78	9	128	26	16	25	31	1.96
43511267--43511310	21	2.0	22	86	4	63	45	0	22	31	1.53
43517885--43518000	43	2.7	43	82	2	144	25	18	26	29	1.98
43520200--43520369	40	4.3	40	87	3	200	25	28	20	25	1.99
43542720--43542839	43	2.8	42	79	2	132	30	25	13	31	1.93
43542749--43542839	42	2.1	43	84	6	114	31	25	9	32	1.89
43545145--43545183	21	1.9	21	84	5	53	61	7	2	28	1.37
43545724--43545829	29	3.7	29	81	6	117	26	27	16	29	1.97
43545721--43545829	58	1.9	58	84	1	148	26	28	16	28	1.97
43555645--43555827	79	2.3	81	84	7	232	24	22	27	26	2.00
43555646--43555829	40	4.6	40	83	9	216	23	22	27	26	2.00
43555679--43555852	79	2.2	78	82	10	210	26	21	26	25	1.99
43562874--43563056	79	2.3	81	85	7	241	24	22	27	25	2.00
43562875--43563058	40	4.6	39	82	9	203	23	22	28	25	1.99
43562927--43563091	79	2.1	79	82	6	192	26	20	27	26	1.99
43566209--43566254	24	1.9	24	90	0	74	8	17	21	52	1.71
43567285--43567332	16	3.1	16	81	3	62	18	2	27	52	1.57
43569906--43570013	29	3.8	28	77	10	94	26	26	16	29	1.97
43569903--43570011	58	1.9	58	84	1	148	26	27	16	29	1.97
43570235--43570287	24	2.3	23	84	12	72	11	20	16	50	1.76
43573463--43573640	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43573484--43573639	82	1.9	81	88	3	233	29	28	15	26	1.96
43576176--43577071	45	19.2	47	90	3	1361	31	8	30	30	1.86
43576364--43576437	22	3.3	22	66	17	62	32	9	28	29	1.88
43577190--43577268	37	2.1	37	90	0	122	24	18	31	25	1.98
43579133--43579364	43	5.4	43	96	0	419	23	15	34	26	1.95
43579346--43579419	29	2.6	29	86	4	96	27	16	31	25	1.96
43579713--43579980	40	6.7	39	81	6	220	26	20	28	24	1.99
43579715--43579945	80	2.9	79	82	8	252	27	20	28	23	1.99
43579914--43579990	40	1.9	40	86	0	109	22	22	29	25	1.99
43583320--43584219	47	19.2	47	91	4	1419	31	8	30	29	1.86
43583604--43583677	22	3.3	22	65	10	60	29	9	31	29	1.89
43583979--43584052	22	3.3	22	64	17	62	32	10	28	28	1.91
43584338--43584416	37	2.1	37	90	0	122	24	18	31	25	1.98
43586383--43586424	16	2.6	16	88	0	66	16	4	28	50	1.66
43592996--43593215	46	4.7	46	80	8	150	28	18	29	23	1.98
43593045--43593217	48	3.7	46	81	6	172	28	19	28	23	1.98
43593046--43593218	95	1.8	92	86	3	247	29	18	28	23	1.98
43607249--43607304	15	3.7	15	83	7	78	10	16	12	60	1.58
43607245--43607304	30	2.0	30	90	6	95	10	15	16	58	1.63
43609707--43609882	46	3.8	45	75	11	169	22	20	27	29	1.98
43609703--43609874	93	1.8	93	88	2	265	22	20	28	28	1.99
43612676--43612731	27	2.1	27	100	0	112	48	14	17	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43616297--43616396	29	3.5	29	82	6	123	31	27	13	29	1.93
43616606--43616648	8	5.4	8	78	10	52	6	20	20	51	1.71
43616606--43616648	16	2.7	16	88	0	68	6	20	20	51	1.71
43617760--43617796	16	2.3	16	95	0	65	18	5	18	56	1.60
43626397--43626443	23	2.0	23	100	0	94	36	12	12	38	1.82
43634186--43634293	31	3.5	31	96	1	191	28	26	16	27	1.97
43634324--43634415	42	2.2	42	96	0	166	32	19	15	32	1.93
43634563--43634632	25	2.8	25	91	4	106	22	24	28	24	1.99
43635087--43635134	19	2.5	19	89	0	69	22	35	16	25	1.95
43635460--43635524	27	2.4	27	82	5	78	21	24	18	35	1.96
43635578--43635684	27	3.9	27	75	16	85	32	7	18	41	1.79
43635640--43635850	27	7.8	27	84	3	230	29	8	20	41	1.82
43635849--43636046	27	7.3	27	88	0	252	39	6	23	29	1.80
43635849--43636046	81	2.4	81	91	0	306	39	6	23	29	1.80
43636322--43636383	28	2.2	28	97	0	115	35	22	22	19	1.96
43640549--43640699	68	2.3	64	80	7	160	29	15	27	27	1.96
43645316--43645347	15	2.1	15	100	0	64	53	0	12	34	1.39
43646478--43646603	60	2.1	59	92	1	207	30	1	50	16	1.55
43646968--43647024	12	4.9	11	77	16	53	73	0	21	5	1.02
43646983--43647038	13	4.6	12	72	12	51	76	0	21	1	0.87
43646967--43647034	23	2.9	23	79	14	77	76	0	19	4	0.95
43651896--43651947	25	2.0	26	85	3	70	36	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43653017--43653127	54	2.1	54	100	0	222	45	14	10	29	1.79
43653856--43653901	22	2.1	22	100	0	92	30	13	21	34	1.91
43657097--43657382	140	2.0	141	87	0	412	29	21	13	34	1.92
43658024--43658119	48	2.0	48	97	0	183	23	27	5	43	1.75
43658036--43658107	21	3.1	21	64	21	54	23	26	4	45	1.71
43661295--43661320	10	2.6	10	100	0	52	34	0	23	42	1.54
43662611--43662648	20	1.9	20	88	0	58	21	23	34	21	1.97
43666254--43666303	25	2.0	26	84	11	68	46	4	14	36	1.63
43666679--43666728	22	2.3	22	86	3	66	32	20	24	24	1.98
43672345--43672427	44	1.9	43	85	2	112	31	6	22	39	1.78
43673476--43673526	20	2.7	19	82	14	54	41	0	21	37	1.54
43674227--43674428	49	4.2	50	72	16	160	27	18	27	25	1.98
43677423--43677478	24	2.3	23	79	8	58	37	14	26	21	1.92
43685191--43685271	41	2.0	42	80	7	94	18	23	32	25	1.97
43687053--43687104	27	1.9	27	96	0	95	26	17	19	36	1.94
43702991--43703188	27	7.3	27	86	2	272	29	23	7	39	1.82
43702991--43703188	81	2.4	81	93	1	326	29	23	7	39	1.82
43703192--43703343	27	5.6	27	79	6	85	40	19	10	28	1.85
43703220--43703368	81	1.8	81	88	2	228	42	20	8	28	1.80
43703220--43703368	27	5.5	27	84	4	167	42	20	8	28	1.80
43703348--43703433	27	3.1	26	74	22	77	39	15	9	36	1.79
43705548--43705720	46	3.7	46	77	13	201	22	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43705545--43705715	93	1.8	93	94	0	306	22	21	28	28	1.99
43709983--43710039	24	2.3	25	85	11	73	10	29	0	59	1.31
43724832--43725052	46	4.7	46	81	9	202	27	19	29	23	1.98
43724832--43725052	94	2.4	94	84	6	279	27	19	29	23	1.98
43731731--43731771	6	6.5	6	83	10	55	78	4	0	17	0.93
43731800--43731867	9	7.6	9	91	0	91	25	11	25	38	1.89
43731792--43731867	18	4.2	18	87	0	89	26	11	23	38	1.89
43731792--43731867	27	2.8	27	85	0	98	26	11	23	38	1.89
43732236--43732269	14	2.4	14	90	0	50	23	29	5	41	1.78
43738710--43738763	11	5.1	11	82	8	76	66	1	1	29	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316