genome.fa.s1.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  153  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48517363--48517441	37	2.1	37	86	4	106	25	18	29	26	1.98
48519293--48519395	43	2.4	43	98	0	197	23	15	34	26	1.94
48519761--48519956	40	4.9	40	81	5	184	26	22	27	24	2.00
48519761--48519957	80	2.5	81	82	5	222	25	22	26	24	2.00
48523620--48523905	47	6.1	47	90	1	439	32	8	30	28	1.87
48524024--48524102	37	2.1	37	88	4	115	25	18	30	25	1.98
48529703--48529998	148	2.0	148	97	0	556	39	17	11	31	1.86
48533079--48533130	27	2.0	26	84	3	68	17	26	21	34	1.95
48533060--48533197	67	2.1	67	90	0	213	18	28	22	29	1.98
48533145--48533206	27	2.3	26	81	8	70	20	22	22	33	1.97
48534735--48534950	40	5.4	40	81	5	242	24	26	23	25	2.00
48550090--48550223	48	2.8	48	85	2	171	29	17	26	26	1.98
48557766--48557826	30	2.0	30	83	0	77	31	22	8	37	1.84
48560290--48560499	39	5.3	39	90	2	298	25	26	21	26	2.00
48560325--48560549	78	2.9	78	82	11	266	24	27	21	26	1.99
48560290--48560551	118	2.2	119	82	11	299	25	26	22	26	2.00
48568297--48568558	39	6.6	39	86	6	302	24	26	22	26	2.00
48568297--48568558	118	2.2	118	83	12	317	24	26	22	26	2.00
48572350--48572573	47	4.8	47	75	4	168	28	19	29	22	1.98
48572352--48572525	94	1.9	94	85	2	242	27	19	29	22	1.98
48578531--48578708	27	6.6	26	82	6	178	26	16	28	28	1.97
48578532--48578687	82	1.9	81	86	3	224	26	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48578528--48578708	82	2.2	81	82	2	220	27	16	27	28	1.97
48578613--48578719	27	3.9	27	83	1	79	26	15	28	29	1.96
48593551--48593728	27	6.6	27	83	5	180	28	28	16	26	1.97
48593572--48593727	82	1.9	81	86	3	224	28	28	16	26	1.97
48596812--48596930	43	2.8	42	81	12	152	31	12	26	30	1.93
48599056--48599243	39	4.7	40	88	4	256	29	26	20	23	1.99
48606958--48607123	40	4.2	40	92	2	255	27	28	22	22	1.99
48610685--48610714	8	3.8	8	90	0	51	3	23	23	50	1.64
48611399--48611433	18	1.9	18	94	0	61	80	0	20	0	0.72
48622827--48623004	27	6.6	26	82	6	178	26	16	28	28	1.97
48622828--48622983	82	1.9	81	86	3	224	26	16	28	28	1.97
48622824--48623004	82	2.2	81	82	2	220	27	16	27	28	1.97
48622909--48623015	27	3.9	27	83	1	79	26	15	28	29	1.96
48624704--48624751	21	2.3	21	75	3	53	12	31	31	25	1.92
48629455--48629625	46	3.7	46	95	0	288	21	23	28	27	1.99
48629909--48629991	41	2.0	41	97	0	157	21	3	15	59	1.52
48632680--48632892	75	2.8	75	94	0	363	35	20	6	37	1.79
48633443--48633497	17	3.2	16	80	10	65	43	16	5	34	1.71
48634173--48634233	18	3.4	18	76	0	68	42	19	8	29	1.80
48636265--48636327	19	3.3	19	76	10	56	46	11	1	41	1.49
48636265--48636317	20	2.8	18	77	11	52	45	11	1	41	1.51
48640469--48640621	40	3.8	40	83	8	188	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48640469--48640621	79	1.9	80	85	6	213	24	20	28	26	1.99
48641988--48642212	40	5.7	40	83	7	244	25	27	22	25	2.00
48641990--48642212	119	1.9	120	82	6	283	25	26	22	25	2.00
48643337--48643512	56	3.1	56	99	0	343	22	22	9	45	1.80
48649512--48649664	40	3.8	40	83	8	188	24	20	28	26	1.99
48649512--48649664	79	1.9	80	84	6	204	24	20	28	26	1.99
48651033--48651257	40	5.7	40	84	7	253	25	27	21	25	2.00
48651035--48651257	119	1.9	120	82	6	283	25	26	21	25	2.00
48652385--48652504	56	2.1	56	98	0	231	22	23	9	45	1.81
48658969--48658998	11	2.7	11	94	0	51	6	13	0	80	0.91
48662107--48662136	16	1.9	16	93	6	53	50	0	13	36	1.42
48667126--48667268	54	2.6	54	87	0	196	37	16	20	26	1.93
48667126--48667248	27	4.6	27	82	4	158	36	17	20	26	1.94
48667470--48667539	25	2.8	25	91	0	104	28	25	21	24	1.99
48667759--48667841	31	2.7	31	96	3	152	28	16	26	27	1.97
48669812--48669987	46	3.8	45	79	11	196	21	21	28	28	1.98
48669809--48669979	93	1.8	93	92	2	290	21	21	29	28	1.98
48672919--48672993	27	2.8	27	76	8	71	36	25	6	32	1.82
48672989--48673111	54	2.3	54	86	0	165	37	18	18	25	1.94
48672996--48673130	27	5.0	27	81	0	144	37	18	20	24	1.94
48673333--48673402	25	2.8	25	91	0	104	28	25	21	24	1.99
48673333--48673415	25	3.4	25	82	11	84	31	22	21	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48673622--48673704	31	2.7	31	94	3	143	28	15	26	28	1.96
48673718--48673772	29	1.9	28	88	3	83	25	23	23	27	2.00
48675988--48676027	21	2.0	21	85	14	57	15	40	25	20	1.90
48677530--48677709	48	3.8	47	86	4	227	33	26	17	23	1.96
48677527--48677709	96	1.9	96	86	2	260	33	25	17	22	1.96
48678267--48678305	21	1.9	20	89	5	60	46	20	0	33	1.51
48686447--48686633	38	4.8	38	85	6	207	22	22	24	30	1.99
48686447--48686624	76	2.3	77	85	5	234	24	23	24	28	1.99
48694432--48694573	38	3.7	37	82	7	151	22	20	24	32	1.98
48694432--48694575	76	1.9	76	85	2	200	22	20	25	31	1.98
48696421--48696615	48	3.8	48	74	15	174	32	26	17	23	1.97
48696428--48696540	60	1.9	60	94	0	199	31	27	17	23	1.97
48699071--48699144	29	2.5	30	84	6	98	28	16	29	25	1.97
48703379--48703516	40	3.5	40	89	4	183	23	23	28	24	1.99
48711594--48711771	40	4.5	40	88	4	229	24	22	26	25	2.00
48713183--48713316	27	5.0	27	76	5	74	26	25	14	34	1.94
48713184--48713297	54	2.1	54	82	6	142	25	23	14	35	1.93
48713217--48713322	54	2.0	54	83	3	133	27	25	13	33	1.93
48713218--48713322	27	3.9	27	78	5	86	27	25	12	34	1.92
48715692--48715737	22	2.1	22	95	0	83	54	0	17	28	1.43
48728417--48728457	21	2.0	21	95	0	73	60	14	4	19	1.51
48728420--48728472	21	2.5	20	82	14	63	60	13	9	16	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48732566--48732857	95	3.1	95	97	0	548	36	13	22	27	1.92
48737651--48737896	49	4.9	50	81	4	264	26	19	24	29	1.98
48747725--48747905	49	3.7	49	83	4	229	24	16	28	30	1.96
48747724--48747905	99	1.8	99	91	0	301	24	15	28	30	1.96
48753655--48753828	37	4.9	37	88	8	256	25	31	17	25	1.97
48753655--48753824	70	2.4	72	91	6	269	25	31	17	25	1.97
48753975--48754264	98	3.0	97	93	2	494	31	25	5	36	1.80
48753975--48754264	48	6.0	48	90	4	465	31	25	5	36	1.80
48753978--48754264	146	2.0	147	92	2	488	31	25	5	36	1.80
48757705--48758046	40	8.7	40	85	2	433	28	27	20	23	1.99
48757705--48758047	79	4.3	79	88	1	472	28	27	20	23	1.99
48759308--48759497	37	4.9	37	84	11	236	25	32	17	23	1.97
48759309--48759496	83	2.4	79	87	7	260	25	32	17	23	1.97
48759393--48759486	46	2.0	46	97	0	179	23	31	20	24	1.98
48759646--48759789	50	2.9	49	90	2	236	31	26	5	36	1.79
48762296--48762470	49	3.5	47	80	5	179	27	18	23	30	1.97
48765159--48765282	28	4.4	28	90	2	178	26	12	28	33	1.92
48772937--48773059	55	2.2	56	88	2	176	26	12	28	33	1.92
48772937--48773059	28	4.4	28	90	2	176	26	12	28	33	1.92
48772962--48773072	28	4.0	27	90	3	116	28	11	26	33	1.91
48778374--48778614	47	5.1	47	92	0	383	33	11	29	26	1.91
48778421--48778499	25	3.3	25	67	22	78	34	10	26	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48778403--48778521	22	5.1	22	63	25	66	33	13	28	24	1.93
48778495--48778570	23	3.2	25	62	24	63	28	13	34	23	1.92
48778584--48778767	48	3.8	48	87	7	282	37	7	25	30	1.82
48778585--48778767	97	1.9	96	89	5	289	37	7	25	30	1.82
48778913--48779021	37	2.9	37	87	0	164	22	19	31	27	1.97
48781194--48781281	44	2.0	44	97	0	167	20	17	27	35	1.94
48787339--48787457	40	3.0	40	93	1	195	33	26	17	22	1.96
48800293--48800693	96	4.2	94	92	3	578	28	29	9	32	1.88
48800278--48800693	47	8.7	47	92	2	590	28	29	9	33	1.88
48805041--48805081	21	1.9	22	90	5	66	78	0	7	14	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316