genome.fa.s1.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  103  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32090371--32090537	43	3.9	43	79	3	158	34	26	13	26	1.93
32092223--32092308	31	2.8	31	92	1	147	24	25	17	32	1.97
32092519--32092597	26	3.1	26	87	3	81	27	20	22	29	1.98
32092531--32092621	26	3.6	26	91	2	125	24	21	26	27	1.99
32108806--32108983	27	6.6	27	84	3	205	29	28	15	26	1.96
32108827--32108982	82	1.9	81	88	3	233	29	28	15	26	1.96
32111570--32111675	47	2.2	48	86	1	142	50	9	27	13	1.72
32119711--32119770	27	2.3	26	85	2	75	36	16	21	25	1.94
32120512--32120629	27	4.4	27	83	1	139	27	20	17	34	1.95
32125460--32125513	27	2.0	27	85	3	74	35	20	22	22	1.96
32125515--32125658	27	5.3	27	81	6	157	25	18	18	37	1.93
32125518--32125659	54	2.6	54	87	3	198	25	19	17	38	1.93
32126811--32126861	26	2.0	26	96	0	93	35	0	13	50	1.42
32134701--32134769	15	4.6	15	83	0	84	11	17	13	57	1.64
32134692--32134779	30	3.0	30	81	8	99	10	17	15	56	1.66
32147067--32147175	44	2.5	44	96	0	200	33	23	11	32	1.90
32150384--32150510	43	3.0	43	79	8	159	33	25	14	26	1.94
32159999--32160051	23	2.2	26	83	10	67	28	26	9	35	1.87
32167341--32167518	50	3.6	49	84	3	203	32	25	16	26	1.96
32173410--32173674	40	6.7	40	84	6	333	26	21	26	26	2.00
32173411--32173707	80	3.7	78	84	6	314	26	21	26	25	1.99
32173463--32173707	120	2.1	118	83	6	307	27	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32180258--32180367	42	2.6	42	80	5	125	30	16	24	29	1.96
32181823--32181857	19	1.9	18	88	11	54	34	0	14	51	1.42
32190761--32190938	45	4.0	45	78	3	184	31	25	16	26	1.96
32193447--32193541	50	1.9	50	93	0	163	26	18	8	46	1.78
32195521--32195613	47	2.0	47	93	0	159	21	10	25	41	1.85
32198446--32198623	27	6.6	27	81	3	160	31	28	14	26	1.94
32206129--32206306	27	6.6	27	84	3	205	29	28	15	26	1.96
32206150--32206305	82	1.9	81	88	3	233	29	28	15	26	1.96
32209517--32209543	14	1.9	14	100	0	54	22	7	11	59	1.56
32212862--32212931	34	2.1	34	94	5	124	47	22	15	14	1.82
32214784--32214968	40	4.7	40	83	7	234	24	22	27	25	2.00
32214784--32214966	79	2.3	81	84	7	232	24	22	27	25	2.00
32222381--32222572	40	4.8	40	82	7	205	25	21	27	25	2.00
32222381--32222563	79	2.3	81	84	7	232	24	22	27	25	2.00
32222382--32222598	79	2.7	78	78	12	228	25	21	27	25	2.00
32229731--32229758	14	2.0	14	100	0	56	57	0	0	42	0.99
32233459--32233900	47	9.4	47	95	0	758	28	30	8	31	1.87
32237906--32238190	40	7.2	40	92	2	384	23	22	27	27	1.99
32249034--32249076	21	2.0	21	100	0	86	58	9	18	13	1.62
32252484--32252590	43	2.5	43	72	6	108	29	16	23	29	1.96
32259553--32259702	43	3.5	43	76	5	133	27	16	24	32	1.96
32260630--32260658	14	2.0	15	93	6	51	27	0	20	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32267892--32268085	49	3.9	49	80	2	235	29	25	18	26	1.98
32267896--32268083	100	1.9	100	94	0	331	30	24	19	26	1.98
32271485--32271631	46	3.2	46	82	6	172	21	27	20	29	1.98
32281615--32281648	18	1.9	17	88	5	50	50	23	5	20	1.70
32284505--32284547	21	2.1	21	83	12	54	41	2	0	55	1.12
32285596--32285658	9	6.7	9	74	7	54	23	4	1	69	1.16
32288391--32288439	22	2.3	21	83	13	57	59	0	4	36	1.17
32288424--32288470	21	2.2	21	88	7	69	55	2	2	40	1.24
32288900--32288980	31	2.7	30	82	3	108	48	13	6	32	1.67
32292400--32292558	43	3.7	42	77	9	135	26	18	25	28	1.98
32297127--32297151	6	4.2	6	100	0	50	20	16	16	48	1.82
32302401--32302504	40	2.6	40	90	3	165	48	6	20	25	1.74
32306369--32306409	20	2.0	20	90	0	64	29	4	9	56	1.53
32310363--32310534	93	1.8	93	86	4	249	29	27	20	23	1.99
32310355--32310530	46	3.8	45	75	10	160	30	26	19	23	1.98
32310406--32310549	46	3.1	46	74	14	134	30	25	19	24	1.98
32315821--32315992	93	1.8	93	86	2	247	29	27	20	22	1.98
32315813--32315982	46	3.7	45	74	9	164	31	27	19	21	1.97
32327001--32327058	26	2.3	25	87	3	80	44	13	5	36	1.66
32330294--32330515	46	4.8	46	83	7	288	29	29	19	21	1.98
32337910--32338314	54	7.5	54	83	5	514	27	21	10	40	1.86
32337913--32338315	81	5.0	80	83	7	526	27	21	10	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32337911--32338319	27	15.1	27	80	6	418	27	21	10	41	1.85
32338324--32338519	27	7.3	27	85	0	248	35	19	19	25	1.95
32338324--32338520	54	3.6	54	87	2	279	36	19	19	25	1.95
32338718--32338797	27	3.0	26	88	3	97	20	22	21	36	1.95
32338895--32338946	22	2.4	22	80	0	59	21	25	21	32	1.98
32339111--32339184	27	2.8	27	83	6	80	17	22	22	36	1.95
32339301--32339402	6	16.8	6	76	17	86	21	17	11	49	1.79
32339301--32339402	30	3.4	30	87	6	143	21	17	11	49	1.79
32348105--32348174	3	23.3	3	100	0	140	32	32	0	34	1.58
32350794--32350841	16	3.0	16	87	6	62	50	0	0	50	1.00
32351161--32351205	15	2.9	16	77	9	58	26	13	4	55	1.57
32358377--32358486	42	2.6	42	89	2	168	30	16	25	27	1.96
32360956--32360986	16	1.9	16	93	0	53	35	22	0	41	1.54
32360953--32360992	20	2.0	20	85	0	53	37	22	0	40	1.54
32361236--32361438	55	3.8	53	78	8	187	23	23	17	35	1.95
32378127--32378196	27	2.6	27	95	2	113	31	28	12	27	1.93
32378127--32378224	28	3.5	28	90	2	135	31	28	13	26	1.94
32383044--32383092	23	2.1	23	81	7	55	65	2	26	6	1.27
32388167--32388290	25	5.0	24	77	9	115	33	24	16	25	1.96
32392762--32392786	13	1.9	13	100	0	50	40	24	4	32	1.73
32394339--32394519	46	4.0	46	91	2	276	24	31	9	34	1.87
32394339--32394519	91	2.0	91	90	0	281	24	31	9	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32394494--32394720	47	5.1	47	84	6	262	26	29	9	34	1.88
32398539--32398829	40	7.4	40	95	2	502	26	27	19	25	1.99
32398539--32398823	119	2.4	119	94	3	495	26	28	20	25	1.99
32400312--32400494	46	4.0	46	89	0	258	25	30	8	34	1.86
32400468--32400752	47	6.1	47	92	0	419	26	29	10	34	1.89
32400558--32400676	22	5.1	22	62	28	59	24	29	13	32	1.93
32409182--32409304	42	2.9	42	78	11	133	31	28	15	24	1.95
32412606--32413228	47	13.3	47	92	0	1016	34	8	28	28	1.87
32416609--32416654	13	3.7	12	82	8	56	43	8	2	45	1.47
32418972--32419000	14	2.1	14	100	0	58	37	13	13	34	1.85
32422084--32422219	57	2.4	56	77	4	139	30	22	18	29	1.97
32436792--32436977	48	3.8	49	81	4	216	25	28	17	28	1.97
32439556--32439788	31	7.5	31	95	0	403	30	25	16	27	1.97
32439995--32440102	25	4.4	25	88	3	121	25	22	24	28	1.99
32440008--32440102	25	3.8	25	91	0	154	25	22	26	26	2.00
32440911--32440988	27	2.9	27	79	11	88	21	20	21	35	1.96
32441029--32441311	27	10.4	27	80	7	189	30	8	20	39	1.83
32441009--32441311	54	5.6	54	77	6	245	30	8	21	39	1.83
32441029--32441297	80	3.3	80	78	6	258	30	8	20	40	1.82
32441289--32441419	27	4.9	27	85	0	163	40	7	22	29	1.81
32441264--32441419	54	2.9	54	84	0	186	39	7	21	32	1.81
32441014--32441335	107	3.0	105	74	6	279	31	9	19	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32441290--32441446	27	5.8	27	83	0	143	37	7	22	31	1.83
32441248--32441457	81	2.6	81	73	0	204	35	7	21	34	1.82
32452374--32452591	40	5.5	40	90	2	300	26	27	22	23	2.00
32457432--32457488	24	2.3	25	84	6	80	33	15	24	26	1.95
32457445--32457500	24	2.5	22	78	16	69	33	16	21	28	1.95
32457447--32457523	22	3.3	23	80	8	77	28	19	22	29	1.98
32458853--32458893	21	2.0	21	90	9	68	12	34	19	34	1.89
32462830--32462867	19	2.0	20	85	15	53	39	23	0	36	1.55
32463097--32463267	93	1.8	93	93	0	297	28	28	21	21	1.98
32463092--32463264	46	3.7	46	79	10	208	29	27	20	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316