genome.fa.s1.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  197  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63867907--63868022	53	2.2	54	87	4	164	34	19	21	24	1.96
63868410--63868468	28	2.1	27	81	9	66	20	27	27	25	1.99
63868455--63868531	33	2.3	33	88	0	118	28	23	24	23	1.99
63872006--63872183	27	6.6	27	82	3	196	27	14	28	29	1.95
63872007--63872162	82	1.9	81	86	3	224	27	14	28	29	1.95
63872005--63872183	82	2.2	81	82	3	216	27	15	27	29	1.96
63880068--63880245	27	6.6	27	83	3	205	26	15	28	29	1.96
63880069--63880224	82	1.9	81	88	3	233	26	15	28	29	1.96
63880067--63880245	82	2.2	81	83	3	225	26	15	27	29	1.96
63881712--63881881	40	4.3	40	85	0	207	24	30	21	23	1.99
63892815--63892963	44	3.4	44	86	2	194	38	26	13	22	1.91
63895687--63895818	66	2.0	66	100	0	264	40	21	9	28	1.83
63902909--63903115	28	7.4	28	92	1	299	25	11	28	35	1.90
63904288--63904354	33	2.0	33	97	0	125	31	22	11	34	1.90
63911215--63911422	28	7.5	28	96	0	364	25	11	27	35	1.90
63911188--63911422	84	2.8	84	91	1	373	26	11	27	34	1.90
63912594--63912660	33	2.0	33	100	0	134	31	20	11	35	1.89
63915227--63915784	279	2.0	279	92	0	936	37	19	13	28	1.90
63917352--63917476	42	3.0	41	80	10	144	23	18	27	31	1.97
63917347--63917484	43	3.2	42	77	12	147	23	16	26	33	1.96
63918201--63918244	23	1.9	23	90	0	70	18	2	27	52	1.57
63918201--63918248	11	4.4	11	80	17	55	18	2	27	52	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63920066--63920237	40	4.3	40	88	2	222	25	27	21	25	1.99
63920068--63920290	40	5.6	39	83	5	216	25	27	21	25	1.99
63920066--63920290	80	2.8	79	80	7	240	25	27	21	25	1.99
63920222--63920299	40	1.9	41	82	10	97	26	28	20	24	1.99
63922257--63922342	28	3.1	28	100	0	172	29	10	24	36	1.89
63923685--63923731	22	2.1	22	100	0	94	31	8	19	40	1.81
63925622--63925670	22	2.2	22	100	0	98	34	16	20	28	1.94
63929988--63930159	93	1.8	93	93	2	301	29	29	20	20	1.98
63929981--63930156	46	3.8	46	77	14	200	30	29	19	20	1.97
63934328--63934382	24	2.2	24	87	3	83	27	18	16	38	1.92
63937233--63937418	40	4.7	40	88	5	243	23	22	27	26	1.99
63937286--63937441	80	2.0	79	87	6	226	25	20	26	26	1.99
63940587--63940799	94	2.3	94	81	3	241	23	29	20	26	1.99
63940441--63940799	47	7.7	46	71	12	214	23	30	20	26	1.99
63942550--63942575	9	2.9	9	100	0	52	11	0	23	65	1.25
63943309--63943474	42	4.0	42	76	1	154	30	16	25	27	1.97
63945503--63945566	24	2.6	24	92	2	101	51	7	12	28	1.67
63952058--63952107	25	2.0	25	100	0	100	56	8	8	28	1.57
63954805--63954933	41	3.1	40	85	5	168	23	17	19	40	1.91
63959383--63959463	41	2.0	41	90	4	130	38	9	11	40	1.74
63963331--63963412	43	1.9	43	85	5	112	23	17	28	31	1.96
63967512--63967815	47	6.4	47	90	3	407	26	29	9	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63972294--63972355	30	2.1	30	96	0	115	37	9	8	45	1.67
63979743--63979959	47	4.6	47	92	1	344	32	8	30	28	1.86
63981375--63981477	43	2.4	43	98	0	197	23	15	34	26	1.94
63981459--63981532	29	2.6	29	89	4	105	25	16	32	25	1.96
63981843--63982078	40	5.9	40	80	4	201	24	22	28	25	1.99
63986350--63986756	47	8.6	47	94	1	688	32	8	29	29	1.87
63986350--63986756	143	2.9	143	94	0	710	32	8	29	29	1.87
63989954--63990067	28	3.9	27	72	19	79	25	27	21	26	1.99
63989931--63990075	61	2.3	60	85	8	177	26	26	20	26	1.99
63990096--63990151	20	2.8	20	83	2	69	33	23	16	26	1.95
63995519--63995556	18	2.1	18	85	9	51	57	2	39	0	1.12
63996659--63996707	21	2.3	21	89	0	71	8	22	32	36	1.84
63997359--63997536	43	4.2	43	89	2	247	43	20	8	27	1.81
63997359--63997536	83	2.1	83	86	4	241	43	20	8	27	1.81
63999172--63999202	15	2.0	16	93	6	55	32	38	6	22	1.80
63999491--63999526	16	2.2	16	100	0	72	50	16	19	13	1.79
63999498--63999894	62	6.3	63	93	1	548	46	15	13	24	1.82
63999562--63999596	16	2.2	16	94	0	61	48	20	17	14	1.81
63999498--63999894	124	3.2	126	90	1	618	46	15	13	24	1.82
63999766--63999867	32	3.1	34	62	25	83	45	14	16	23	1.85
63999812--63999848	16	2.3	16	90	0	56	51	21	13	13	1.75
64004894--64004926	16	2.0	17	88	5	50	9	6	15	69	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64007648--64007763	35	3.2	35	63	11	88	26	21	20	31	1.98
64007627--64007933	75	4.1	74	87	2	346	26	20	20	32	1.97
64007791--64007902	35	3.1	35	70	16	109	28	17	21	32	1.96
64007670--64007870	40	5.3	39	65	16	125	28	19	19	32	1.96
64015124--64015312	75	2.5	74	86	3	236	26	19	19	34	1.96
64015126--64015334	75	2.8	75	83	5	235	25	20	20	33	1.97
64016993--64017037	23	2.0	23	95	0	81	22	26	13	37	1.91
64018605--64018782	55	3.2	55	83	0	221	32	23	14	29	1.94
64032262--64032516	39	6.5	39	84	1	341	45	19	3	31	1.67
64037769--64037804	19	2.0	18	89	10	56	25	19	38	16	1.92
64055286--64055469	67	2.8	64	81	10	196	22	30	16	29	1.96
64056204--64056264	30	2.0	30	83	0	77	31	22	8	37	1.84
64091070--64091232	42	3.9	42	75	12	147	28	24	16	30	1.97
64095156--64095187	14	2.3	14	100	0	64	37	21	18	21	1.94
64099632--64099856	40	5.7	40	84	5	260	24	27	22	24	2.00
64099634--64099856	119	1.9	120	82	6	283	24	27	22	25	2.00
64100985--64101104	56	2.1	56	98	0	231	22	23	9	45	1.81
64106302--64106332	15	2.1	15	93	0	53	25	16	22	35	1.94
64106535--64106626	48	1.9	48	88	4	141	33	4	21	40	1.73
64121704--64121801	40	2.5	40	91	0	169	30	25	15	28	1.96
64127991--64128163	50	3.7	46	81	10	174	22	29	18	29	1.97
64130905--64131046	55	2.6	55	88	0	212	15	27	30	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64132013--64132106	40	2.3	40	92	0	152	29	24	18	27	1.98
64134933--64135054	47	2.6	47	94	0	217	36	13	24	26	1.92
64135033--64135229	55	3.6	54	82	4	245	36	17	24	21	1.95
64135033--64135240	53	3.9	54	82	4	240	35	17	25	22	1.95
64143471--64143528	30	2.1	30	81	12	70	1	25	3	68	1.14
64143477--64143529	22	2.4	23	75	15	58	1	22	3	71	1.12
64143532--64143556	8	3.1	8	100	0	50	48	0	0	52	1.00
64146046--64146222	27	6.6	27	83	4	196	29	28	14	27	1.95
64146066--64146221	82	1.9	81	88	3	233	29	28	15	26	1.96
64154103--64154279	27	6.5	27	84	3	203	29	27	15	27	1.96
64154123--64154278	82	1.9	81	88	3	233	29	28	15	26	1.96
64157231--64157270	17	2.4	17	91	0	62	32	0	20	47	1.50
64157239--64157273	17	2.1	17	100	0	70	31	0	17	51	1.45
64157256--64157320	34	1.9	34	96	0	121	44	3	13	38	1.60
64159999--64160026	13	2.2	13	100	0	56	14	14	7	64	1.48
64160907--64160994	45	2.0	45	93	0	149	42	25	9	23	1.83
64160930--64160998	21	3.1	21	66	15	50	42	24	10	23	1.85
64163241--64163396	85	1.8	84	82	6	199	30	25	17	25	1.97
64165321--64165363	21	2.1	20	82	4	50	74	0	25	0	0.82
64169890--64169987	43	2.3	43	87	0	142	33	25	16	24	1.96
64173880--64173938	21	2.8	22	80	7	61	22	0	8	69	1.15
64173909--64173956	26	1.9	24	83	8	60	29	0	8	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64174768--64174820	16	3.3	15	76	12	52	0	39	0	60	0.97
64174749--64174818	28	2.5	29	80	15	76	0	38	0	61	0.96
64175176--64175241	18	3.5	18	71	17	53	30	1	0	68	0.99
64176179--64176234	27	2.0	28	93	3	96	12	7	8	71	1.30
64178935--64179148	20	10.8	20	84	2	261	14	21	24	38	1.92
64185127--64185247	39	3.1	39	95	0	215	20	23	31	23	1.98
64203705--64203802	51	1.9	51	83	4	126	39	14	11	34	1.81
64220090--64220155	33	2.0	33	90	0	105	33	39	7	19	1.80
64222864--64223405	270	2.0	270	97	0	1030	34	20	10	33	1.88
64231724--64231772	26	1.9	26	87	4	73	63	2	0	34	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316