genome.fa.s1.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  120  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37988610--37988782	46	3.7	46	79	13	219	29	27	20	21	1.98
37992658--37992881	79	2.8	79	83	6	283	25	28	22	23	1.99
37992660--37992881	40	5.6	40	85	6	258	25	28	22	23	1.99
37994622--37994661	10	4.0	10	81	12	55	60	7	0	32	1.25
37994623--37994666	20	2.1	21	95	4	81	61	4	0	34	1.16
37994688--37994717	15	1.9	16	93	6	53	43	0	0	56	0.99
37994633--37994730	35	2.7	35	80	12	108	55	3	0	41	1.15
37994705--37994761	22	2.8	19	74	20	53	63	3	3	29	1.28
37994747--37994780	16	2.1	16	88	0	50	61	0	5	32	1.20
38012333--38012365	15	2.2	15	100	0	66	36	21	30	12	1.90
38018849--38018917	28	2.4	29	77	18	72	50	0	1	47	1.09
38019019--38019055	14	2.6	14	100	0	74	64	18	0	16	1.29
38020196--38020257	29	2.1	31	93	6	110	19	3	16	61	1.48
38022721--38022796	32	2.4	32	88	0	116	22	21	28	27	1.99
38022711--38022778	32	2.4	26	70	25	64	26	17	25	30	1.97
38025307--38025368	30	2.1	28	85	5	79	41	1	6	50	1.38
38025328--38025384	21	2.7	20	71	10	51	43	0	3	52	1.18
38026677--38026822	39	3.7	39	81	0	184	39	10	12	37	1.78
38028749--38028853	27	3.9	27	86	9	135	33	22	24	19	1.97
38041961--38042022	27	2.3	26	76	10	63	46	14	9	29	1.76
38045543--38045604	28	2.1	28	91	5	97	41	1	8	48	1.42
38046898--38047048	39	3.9	39	79	0	167	38	11	13	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38049574--38049686	29	3.9	30	77	12	105	25	27	14	32	1.94
38049574--38049686	58	2.0	58	84	5	149	25	27	14	32	1.94
38056955--38057175	118	1.9	119	83	8	290	24	27	22	25	2.00
38056953--38057176	40	5.7	40	83	7	269	25	27	22	25	2.00
38064887--38065111	80	2.8	81	82	6	273	26	28	21	24	1.99
38064889--38065111	119	1.9	120	82	6	283	26	28	21	24	1.99
38064887--38065111	40	5.6	39	82	7	247	26	28	21	24	1.99
38069327--38069456	40	3.1	41	62	22	97	40	6	24	28	1.79
38069288--38069456	85	2.0	85	98	0	329	39	7	26	27	1.83
38069385--38069527	71	2.0	71	100	0	286	42	6	20	29	1.78
38069300--38069612	156	2.0	156	98	0	608	40	7	23	28	1.82
38069456--38069622	85	2.0	85	97	0	316	39	7	25	26	1.83
38071581--38071756	56	3.1	56	99	0	343	22	22	9	45	1.80
38077554--38077738	79	2.3	82	84	7	229	24	27	22	24	2.00
38077535--38077738	40	5.1	40	81	8	229	24	27	22	25	2.00
38078864--38079039	56	3.1	56	97	0	334	22	22	9	46	1.80
38079335--38079703	47	7.8	47	92	3	519	33	9	29	28	1.88
38079335--38079853	143	3.5	142	83	9	605	33	9	29	27	1.88
38079639--38079768	65	2.0	65	92	0	215	32	11	33	23	1.90
38079335--38079853	96	5.3	95	83	10	539	33	9	29	27	1.88
38079595--38079815	112	2.0	112	95	1	399	33	11	31	23	1.90
38079704--38079853	47	3.2	47	93	1	221	34	9	30	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38079548--38079853	159	1.9	159	90	4	492	33	10	31	25	1.89
38082283--38082357	38	2.0	38	86	5	107	30	18	26	24	1.98
38082411--38082723	40	8.1	40	86	4	419	25	22	27	24	2.00
38082886--38082937	25	2.1	25	85	7	70	28	7	32	30	1.85
38083965--38084228	85	3.1	85	99	0	519	37	8	27	26	1.85
38085493--38085908	47	8.8	47	92	2	586	33	9	29	28	1.88
38085493--38085908	96	4.4	94	93	2	586	33	9	29	28	1.88
38085493--38086058	143	3.9	141	84	8	654	33	9	29	27	1.88
38085844--38085973	65	2.0	65	92	0	215	33	11	31	23	1.90
38085800--38086020	112	2.0	112	95	1	399	34	11	30	23	1.90
38085909--38086058	47	3.2	47	92	1	203	35	9	30	25	1.87
38085753--38086058	159	1.9	159	88	4	465	33	10	30	25	1.90
38088227--38088404	27	6.6	27	83	3	205	26	15	28	29	1.96
38088228--38088383	82	1.9	81	88	3	233	26	15	28	29	1.96
38088224--38088404	82	2.2	81	83	2	229	27	15	27	29	1.96
38093016--38093045	15	2.0	15	93	0	51	30	16	13	40	1.87
38099705--38099765	30	2.0	30	83	0	77	31	22	8	37	1.84
38101382--38101442	30	2.0	30	87	0	86	39	6	22	31	1.80
38102181--38102241	30	2.0	30	83	0	77	31	22	8	37	1.84
38104411--38104541	44	3.0	42	87	6	174	35	24	16	23	1.94
38120273--38120330	27	2.1	27	84	6	73	53	6	0	39	1.28
38120411--38120456	23	2.0	24	83	12	60	56	10	0	32	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38143123--38143183	30	2.0	30	100	0	122	27	19	29	22	1.98
38144775--38144952	27	6.6	27	83	3	196	27	15	28	29	1.96
38144776--38144931	82	1.9	81	86	3	224	27	15	28	28	1.96
38144772--38144952	82	2.2	81	82	2	220	27	15	27	29	1.96
38156307--38156481	46	3.8	45	78	7	190	28	28	21	22	1.99
38156315--38156486	93	1.8	93	92	0	290	27	29	21	22	1.99
38156312--38156501	46	4.1	44	69	18	109	28	27	21	22	1.99
38160319--38160399	34	2.4	34	83	2	101	25	19	23	30	1.98
38163552--38163605	20	2.7	20	100	0	108	11	27	38	22	1.88
38166822--38167215	40	9.9	40	91	0	626	24	21	28	24	1.99
38166822--38167215	80	4.9	80	96	0	689	24	21	28	24	1.99
38169270--38169294	9	2.8	9	100	0	50	52	0	24	24	1.48
38174304--38174416	43	2.7	42	76	12	104	23	17	27	30	1.97
38174954--38175005	22	2.3	23	74	9	54	17	3	28	50	1.64
38182468--38182492	8	3.1	8	100	0	50	52	24	0	24	1.48
38183935--38183982	20	2.4	20	96	0	87	10	33	18	37	1.85
38183955--38184153	41	4.7	41	78	7	218	18	27	19	35	1.94
38184050--38184153	20	5.1	20	62	9	57	15	28	22	33	1.94
38184748--38184823	34	2.2	34	83	4	91	30	26	19	23	1.98
38184760--38184825	34	1.9	34	87	0	96	27	27	22	22	1.99
38186664--38186777	42	2.7	42	84	4	149	27	25	14	32	1.95
38186897--38187076	31	5.8	31	87	2	236	27	26	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38187052--38187178	50	2.5	52	88	3	179	25	21	16	36	1.94
38193306--38193608	40	7.6	40	88	2	378	24	20	28	27	1.99
38200854--38201156	40	7.6	40	88	2	378	24	20	28	27	1.99
38206088--38206164	34	2.3	34	88	4	111	28	23	22	25	1.99
38209926--38210093	6	27.3	6	72	15	130	48	14	17	18	1.81
38209935--38210093	37	4.5	37	76	12	152	49	14	18	18	1.80
38210008--38210092	43	2.0	43	100	0	170	47	17	18	16	1.84
38209984--38210090	25	4.6	25	78	15	129	47	15	18	17	1.83
38210212--38210276	27	2.4	27	100	0	130	35	16	23	24	1.95
38210239--38210441	67	3.0	67	91	1	336	31	21	27	20	1.98
38210374--38210424	27	1.9	26	84	4	66	35	17	27	19	1.94
38210669--38210813	27	5.4	27	89	3	186	24	20	19	35	1.95
38210658--38210839	81	2.2	81	76	5	181	27	18	20	34	1.96
38210849--38211243	27	14.7	26	80	6	360	31	8	20	39	1.83
38210902--38211243	27	12.7	27	84	2	400	32	8	19	39	1.82
38210931--38211243	54	5.8	54	92	0	446	31	8	19	39	1.82
38210847--38211243	81	4.9	81	81	3	415	31	8	20	39	1.83
38215684--38215750	34	2.0	34	96	0	125	37	26	4	31	1.77
38217686--38217865	40	4.5	40	81	6	172	23	28	23	24	2.00
38220258--38220309	27	1.9	27	88	7	79	36	28	21	13	1.91
38220718--38220775	27	2.1	27	81	6	64	25	25	20	27	1.99
38220728--38220786	27	2.2	27	90	0	91	23	22	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38223500--38223561	24	2.7	22	75	20	56	46	3	6	43	1.45
38231877--38231961	41	2.1	41	97	0	161	45	8	10	35	1.69
38239967--38240149	79	2.3	81	83	7	223	26	28	21	23	1.99
38239946--38240149	40	5.1	40	80	8	229	25	28	21	24	1.99
38240350--38240519	84	2.0	84	98	0	331	16	25	21	36	1.94
38249194--38249266	36	2.0	36	100	0	146	21	5	26	46	1.73
38261715--38261763	21	2.3	21	96	0	89	28	26	22	22	1.99
38262892--38262924	16	1.9	18	88	11	52	51	18	12	18	1.76
38263489--38263627	43	3.2	43	91	0	224	26	26	19	27	1.99
38266642--38266728	41	2.1	41	85	4	113	26	12	27	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316