genome.fa.s1.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  173  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55471582--55471679	34	2.9	33	83	3	108	23	23	22	30	1.99
55478171--55478209	16	2.3	17	82	13	53	79	0	20	0	0.73
55485591--55485629	11	3.5	11	82	10	53	71	0	25	2	0.98
55486422--55486451	6	5.0	6	91	0	51	16	13	20	50	1.78
55492056--55492103	23	2.1	23	84	7	62	45	25	6	22	1.75
55495553--55496034	130	3.7	129	75	7	384	35	16	19	28	1.93
55495553--55496079	131	4.0	131	76	6	442	35	16	18	29	1.93
55496378--55496428	21	2.4	23	75	18	56	54	15	11	17	1.70
55504715--55504811	27	3.6	27	88	0	131	27	19	15	37	1.92
55504734--55504957	27	8.3	27	86	2	288	20	16	21	40	1.91
55507352--55507391	19	2.1	19	86	9	55	45	2	5	47	1.38
55515441--55515612	54	3.2	54	85	4	231	24	18	19	37	1.94
55515450--55515612	81	2.0	80	85	3	220	23	17	20	38	1.93
55515441--55515606	27	6.1	27	86	3	199	24	19	18	37	1.94
55519272--55519418	27	5.5	27	87	0	143	27	14	17	40	1.89
55519272--55519413	54	2.6	53	83	1	158	26	15	16	40	1.89
55527136--55527194	30	2.0	30	89	0	91	32	13	25	28	1.94
55527530--55527701	46	3.7	44	79	11	168	27	20	29	23	1.99
55530126--55532816	696	4.0	690	83	6	3273	31	16	17	35	1.92
55537061--55537267	53	3.8	54	82	3	256	19	25	18	36	1.95
55545246--55545502	47	5.4	47	89	3	347	33	9	30	26	1.88
55545353--55545427	22	3.3	22	64	29	57	32	13	30	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55547930--55548004	38	2.0	38	86	5	107	30	18	26	24	1.98
55548058--55548338	40	7.1	40	88	0	393	25	22	27	24	2.00
55565837--55565888	27	2.0	26	84	3	68	17	26	21	34	1.95
55565927--55565986	27	2.3	26	85	2	75	25	23	16	35	1.95
55571706--55571793	28	2.9	31	78	13	101	25	21	23	29	1.99
55600209--55600239	14	2.2	14	94	0	53	6	25	6	61	1.45
55607318--55607432	27	4.3	26	79	9	97	35	20	23	20	1.96
55607342--55607431	28	3.3	28	81	4	112	35	21	23	20	1.96
55610203--55610293	15	5.9	14	76	14	74	63	0	6	29	1.19
55610203--55610342	20	7.4	20	69	23	67	60	0	5	32	1.25
55610203--55610298	30	3.1	30	75	14	88	62	0	7	30	1.22
55610201--55610285	12	7.7	11	71	21	54	64	0	5	29	1.17
55610309--55610349	14	2.9	14	88	3	64	58	0	0	41	0.98
55621247--55621361	27	4.3	26	75	11	97	35	20	22	21	1.96
55621281--55621355	28	2.8	27	83	4	89	33	21	24	21	1.97
55621649--55621689	21	1.9	22	85	5	57	39	4	24	31	1.76
55638620--55638733	53	2.4	43	74	25	131	30	26	17	25	1.97
55638636--55638751	53	2.2	53	98	1	225	30	25	18	26	1.98
55640637--55640691	25	2.3	25	84	6	78	45	9	1	43	1.46
55641947--55642134	42	4.4	42	78	5	146	23	13	26	37	1.91
55643834--55643979	29	5.1	28	78	8	145	28	14	30	26	1.95
55651501--55651647	29	5.2	29	74	12	128	28	13	31	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55651501--55651646	57	2.6	57	81	11	151	28	13	30	26	1.94
55655456--55655498	19	2.3	19	88	4	61	11	25	37	25	1.90
55657411--55657533	46	2.7	45	82	9	162	23	27	18	30	1.98
55660691--55660727	16	2.3	16	90	0	56	37	16	10	35	1.83
55663517--55663549	14	2.4	14	100	0	66	24	12	0	63	1.28
55673260--55673356	30	3.2	30	73	0	86	27	27	15	28	1.96
55675731--55675772	16	2.6	16	88	0	66	80	2	14	2	0.90
55675854--55675934	30	2.7	30	77	7	85	61	0	25	12	1.31
55683868--55683921	21	2.6	21	90	0	81	22	24	33	20	1.97
55685193--55685266	26	3.2	26	62	34	67	33	6	13	45	1.70
55685191--55685280	44	2.0	44	97	0	171	33	6	15	44	1.73
55685402--55685458	28	2.0	28	82	0	69	29	8	29	31	1.87
55688933--55688993	28	2.1	30	81	6	72	40	3	26	29	1.72
55689472--55689638	43	3.9	43	75	6	142	28	14	23	32	1.94
55692008--55692189	79	2.3	80	81	8	210	25	28	21	24	1.99
55691989--55692189	40	5.1	40	81	8	223	25	28	21	24	1.99
55693285--55693460	56	3.1	56	99	0	343	22	22	9	45	1.80
55694633--55694676	17	2.5	17	82	13	54	75	9	4	11	1.19
55697067--55697104	19	2.0	20	85	15	53	36	0	23	39	1.55
55705303--55705494	29	6.6	29	83	5	228	21	27	9	41	1.84
55705292--55705494	86	2.3	87	89	4	311	22	26	10	40	1.86
55707811--55707886	37	2.1	37	100	0	152	35	18	7	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55711919--55712021	51	2.0	51	83	3	127	33	14	20	32	1.93
55714783--55714822	21	2.0	20	85	5	53	17	25	40	17	1.91
55720139--55720323	40	4.6	40	79	3	210	24	23	27	24	2.00
55720141--55720359	80	2.7	78	80	6	210	25	23	26	24	2.00
55737207--55737391	40	4.6	40	79	3	210	24	23	28	23	2.00
55741466--55741598	41	3.2	41	84	6	164	31	25	18	24	1.97
55743422--55743568	56	2.6	56	80	4	179	29	12	20	37	1.90
55747850--55747958	50	2.2	51	81	8	125	31	25	14	28	1.95
55749291--55750117	413	2.0	412	96	0	1537	31	19	13	34	1.91
55754514--55754624	51	2.2	51	83	3	134	29	27	15	27	1.96
55754547--55754766	51	4.3	51	78	5	176	31	24	16	28	1.96
55763268--55763354	39	2.2	39	89	0	129	22	22	26	27	2.00
55765557--55765778	40	5.6	40	87	3	279	24	26	22	27	2.00
55793112--55793137	9	2.9	9	100	0	52	65	23	0	11	1.25
55798733--55798854	43	2.9	42	77	11	106	31	24	18	25	1.97
55798744--55798887	44	3.3	43	75	13	136	31	23	19	25	1.98
55798744--55798927	33	4.5	42	73	18	140	31	23	19	25	1.98
55801020--55801202	45	4.0	43	72	20	131	30	27	18	23	1.98
55801614--55801673	30	2.0	30	86	0	84	33	25	5	36	1.78
55808345--55808382	19	2.0	20	85	15	53	39	23	0	36	1.55
55808612--55808781	93	1.8	93	91	2	279	30	28	20	21	1.98
55808607--55808779	46	3.7	47	79	10	203	30	27	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55816222--55816246	10	2.5	10	100	0	50	24	20	44	12	1.85
55816585--55816615	16	1.9	16	93	0	53	32	25	12	29	1.93
55818502--55818668	83	2.0	83	97	0	316	29	10	28	31	1.90
55828235--55828283	20	2.5	20	93	0	80	51	14	2	32	1.54
55828824--55828926	6	16.8	6	75	11	93	52	14	15	17	1.75
55828824--55828926	43	2.4	43	85	9	140	52	14	15	17	1.75
55829043--55829102	27	2.3	26	85	2	75	35	20	23	21	1.96
55829142--55829192	27	1.9	26	84	4	66	35	17	27	19	1.94
55829437--55829577	27	5.3	27	88	0	194	24	20	20	34	1.96
55829562--55829738	27	6.6	27	77	8	139	29	8	22	39	1.83
55829491--55829604	54	2.1	54	82	6	133	27	16	21	35	1.95
55829425--55829606	81	2.3	79	76	6	186	28	17	20	34	1.95
55829645--55829746	52	2.0	52	84	3	134	30	9	18	41	1.83
55831711--55831786	38	2.0	38	97	0	143	32	13	22	31	1.92
55832235--55832379	40	3.6	40	85	4	193	25	24	26	23	2.00
55844309--55844341	16	2.1	16	100	0	66	42	24	18	15	1.88
55846186--55846313	27	4.8	27	89	0	186	38	21	21	19	1.94
55846414--55846467	27	2.0	27	85	3	74	33	18	20	27	1.96
55849942--55850052	27	4.2	26	85	5	132	34	22	25	18	1.96
55849942--55850052	54	2.1	53	89	1	168	34	22	25	18	1.96
55861160--55861721	47	11.7	47	94	2	901	32	8	29	29	1.87
55861207--55861285	25	3.3	25	61	10	65	32	5	29	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55861181--55861721	49	11.3	49	94	3	908	32	8	29	29	1.86
55861160--55861721	96	5.9	96	94	2	954	32	8	29	29	1.87
55861840--55861918	37	2.1	37	88	0	113	24	18	30	26	1.98
55863516--55863665	43	3.5	43	78	8	135	32	24	18	24	1.97
55865952--55866157	48	4.5	46	78	9	172	32	22	15	29	1.95
55866034--55866157	44	2.7	45	82	8	153	31	22	13	32	1.93
55871297--55871516	46	4.7	47	79	7	207	23	27	20	28	1.99
55871316--55871516	94	2.1	93	85	7	264	23	27	19	29	1.98
55877621--55877802	67	2.8	64	73	11	156	30	15	29	24	1.96
55891552--55891630	37	2.1	37	88	4	115	25	30	18	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316