genome.fa.s1.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  143  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45579035--45579247	54	4.0	53	85	2	239	36	17	20	25	1.94
45579155--45579248	27	3.5	25	77	18	68	34	19	21	25	1.96
45579088--45579248	81	2.0	80	84	3	207	36	19	19	24	1.95
45579648--45579712	22	3.0	22	75	8	69	20	23	21	35	1.96
45579871--45579971	27	3.7	27	82	5	105	20	23	20	34	1.96
45580108--45580239	6	21.3	6	71	17	92	18	16	15	48	1.81
45580108--45580219	31	3.6	31	86	1	143	18	16	16	48	1.82
45583105--45583209	43	2.4	43	80	3	131	28	14	21	35	1.93
45584078--45584118	21	2.0	21	85	0	55	31	7	21	39	1.81
45585305--45585349	24	1.9	23	86	4	63	33	22	4	40	1.74
45590234--45590311	33	2.4	33	86	4	104	17	19	17	44	1.87
45590738--45590910	43	4.1	42	76	8	161	31	24	15	28	1.96
45595748--45595814	33	2.0	33	100	0	134	34	23	17	23	1.96
45597256--45597296	20	2.0	20	95	0	73	41	17	9	31	1.82
45599564--45599641	33	2.4	33	86	0	111	19	19	17	43	1.88
45602939--45603107	43	4.0	42	78	4	169	32	25	14	27	1.95
45612224--45612248	13	1.9	13	100	0	50	40	24	4	32	1.73
45629752--45629833	6	13.3	6	72	19	62	47	14	18	19	1.82
45629761--45629833	31	2.4	31	90	0	110	47	13	19	19	1.82
45629952--45630011	27	2.3	26	85	2	75	35	20	23	21	1.96
45630050--45630101	27	2.0	26	84	3	68	34	21	26	17	1.95
45630370--45630594	27	8.3	27	91	0	333	24	19	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45630361--45630624	81	3.3	79	79	6	271	26	18	18	35	1.94
45630631--45630909	27	10.3	26	83	3	243	32	8	20	38	1.83
45630686--45630989	54	5.8	53	82	10	317	32	8	20	38	1.83
45630630--45630989	81	4.6	80	76	7	290	31	9	20	38	1.84
45630895--45630925	16	1.9	16	93	0	53	35	16	22	25	1.94
45630869--45630955	43	2.0	43	100	0	174	31	11	22	34	1.90
45630841--45630979	70	2.0	70	86	0	197	31	11	21	35	1.89
45630815--45631015	97	2.1	96	89	1	305	32	10	21	35	1.87
45630911--45630989	27	2.9	27	84	0	113	30	10	21	37	1.86
45640206--45640412	53	3.8	54	77	4	193	19	24	16	38	1.92
45652471--45652527	26	2.2	26	83	3	69	28	19	17	35	1.94
45654506--45654536	3	10.3	3	92	0	53	61	0	0	38	0.96
45654626--45654669	19	2.4	18	85	7	54	40	9	0	50	1.34
45660211--45660463	39	6.6	39	88	8	385	24	22	26	26	2.00
45668114--45668358	39	6.2	40	84	8	324	22	22	28	26	1.99
45668116--45668342	79	2.9	79	85	8	336	22	22	29	25	1.99
45668114--45668370	119	2.2	119	86	6	330	23	22	28	26	1.99
45676088--45676349	40	6.6	40	87	3	368	24	22	27	25	2.00
45680560--45680738	28	6.4	28	92	1	279	34	26	11	26	1.91
45685631--45685660	15	2.0	15	100	0	60	13	0	33	53	1.40
45695941--45696298	47	7.6	47	94	1	590	28	29	8	33	1.86
45695991--45696069	25	3.3	25	66	16	76	31	29	5	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45695941--45696298	190	1.9	188	94	1	635	28	29	8	33	1.86
45699346--45699386	20	2.0	20	86	9	57	26	2	2	68	1.15
45706425--45706476	26	2.0	26	88	3	77	28	13	21	36	1.91
45719024--45719083	30	2.0	30	86	0	84	40	6	25	28	1.80
45723849--45723889	15	2.6	17	77	18	52	41	0	19	39	1.52
45724219--45724327	43	2.5	42	80	5	112	27	18	21	33	1.96
45726133--45727346	308	3.9	308	86	1	1662	37	18	20	23	1.94
45728521--45728603	8	9.8	8	72	12	67	24	6	0	69	1.10
45728760--45728826	17	4.1	17	75	24	63	14	5	2	76	1.10
45728760--45728812	14	3.5	15	80	10	54	16	5	1	75	1.08
45728779--45728822	20	2.2	20	80	4	54	13	6	4	75	1.17
45731385--45731626	39	6.2	39	86	0	322	25	23	28	21	1.99
45731385--45731621	78	3.0	78	89	0	357	24	24	29	21	1.99
45731385--45731626	117	2.1	117	89	0	367	25	23	28	21	1.99
45737372--45737602	39	5.9	39	89	0	336	23	22	29	23	1.99
45737372--45737602	117	2.0	117	92	0	381	23	22	29	23	1.99
45742143--45742313	40	4.2	40	77	10	138	30	14	24	30	1.95
45742246--45742332	40	2.2	41	89	4	133	32	16	20	31	1.94
45744363--45744508	27	5.4	27	84	0	184	24	19	19	36	1.94
45744363--45744508	54	2.7	55	87	3	215	24	19	19	36	1.94
45749698--45749757	27	2.3	26	85	2	75	35	20	23	21	1.96
45749719--45749782	33	2.0	32	84	3	83	34	20	25	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45749798--45749849	27	2.0	26	84	3	68	34	17	26	21	1.95
45750503--45750619	27	4.3	27	90	0	171	23	22	18	35	1.96
45756759--45756794	6	5.7	6	87	12	54	2	13	0	83	0.76
45756759--45756795	7	5.6	7	90	3	51	2	13	0	83	0.74
45756759--45756795	13	2.8	13	92	8	58	2	13	0	83	0.74
45757557--45757625	34	2.0	34	83	5	86	30	26	20	23	1.98
45760374--45760398	13	1.9	13	100	0	50	32	4	24	40	1.73
45761413--45761574	43	3.8	43	74	9	134	27	16	25	31	1.96
45765613--45765637	11	2.3	11	100	0	50	44	16	28	12	1.83
45773467--45773530	27	2.3	27	78	10	67	1	37	0	60	1.06
45773950--45774014	14	4.4	15	78	14	64	20	4	0	75	0.98
45773945--45773992	16	2.9	16	84	9	53	16	8	0	75	1.04
45773950--45774016	5	13.6	5	73	9	57	19	4	0	76	0.96
45777180--45777211	9	3.8	9	84	16	50	31	0	0	68	0.90
45785429--45785502	6	12.3	6	82	0	85	14	6	2	75	1.12
45785429--45785515	12	7.2	12	78	8	79	14	6	3	74	1.16
45791719--45791757	18	2.2	18	100	0	78	25	23	15	35	1.94
45797049--45797226	27	6.6	27	84	3	214	26	14	28	30	1.95
45797050--45797205	82	1.9	81	88	3	233	26	14	28	30	1.95
45797049--45797226	82	2.2	81	84	3	232	26	14	28	30	1.95
45816757--45816979	40	5.6	40	85	3	236	26	27	21	24	1.99
45816911--45816988	40	1.9	41	82	10	97	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45820528--45820699	46	3.7	46	75	7	168	31	29	19	20	1.97
45820535--45820705	93	1.8	93	87	0	252	30	28	20	21	1.98
45827849--45828033	79	2.3	81	83	7	227	24	22	27	24	2.00
45827850--45828033	40	4.6	40	82	9	207	25	22	27	24	2.00
45827902--45828066	79	2.1	79	83	6	201	26	21	27	24	1.99
45832723--45832763	20	2.0	20	90	0	64	21	26	34	17	1.95
45835828--45836012	40	4.7	40	80	7	200	24	22	27	24	2.00
45835881--45836045	79	2.1	79	82	6	192	26	20	27	25	1.99
45839399--45839446	20	2.4	20	85	0	69	22	31	18	27	1.97
45841587--45841796	40	5.3	40	92	0	314	23	20	29	26	1.99
45844939--45844989	25	2.0	25	96	0	93	45	13	3	37	1.63
45848896--45848952	21	2.7	21	86	2	78	35	7	35	22	1.82
45848910--45848954	18	2.5	18	88	0	63	37	6	33	22	1.80
45849262--45849291	14	2.1	15	93	6	53	60	0	33	6	1.23
45854593--45854740	45	3.3	44	81	12	162	37	25	14	23	1.92
45886984--45887161	27	6.6	27	80	6	164	29	28	16	25	1.97
45887005--45887160	82	1.9	81	85	3	215	28	28	16	25	1.97
45894979--45895237	27	9.6	27	83	4	234	30	27	14	27	1.95
45894979--45895236	54	4.8	54	82	3	277	30	27	14	27	1.95
45895000--45895236	81	2.9	81	93	1	395	29	27	14	27	1.95
45904149--45904195	24	2.0	24	86	0	67	38	4	6	51	1.47
45908001--45908102	17	6.0	17	69	0	69	46	15	8	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45907997--45908101	51	2.1	51	83	0	129	46	14	8	30	1.74
45908734--45908782	18	2.7	18	84	6	64	48	22	4	24	1.67
45910818--45910846	11	2.7	11	94	5	51	58	0	34	6	1.25
45912727--45912783	15	3.8	15	73	13	55	36	3	0	59	1.14
45912731--45912797	32	2.1	31	83	8	82	37	5	0	56	1.24
45918184--45918427	45	5.3	45	78	4	245	31	17	17	34	1.93
45918224--45918424	95	2.2	93	82	6	246	31	18	17	31	1.94
45926942--45926990	15	3.5	15	68	21	52	53	30	2	14	1.52
45926935--45926989	26	2.1	26	100	0	110	54	25	3	16	1.58
45928708--45928737	14	2.1	14	93	0	51	53	0	3	43	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316