genome.fa.s1.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  105  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32834937--32835111	29	6.1	29	91	2	266	31	30	12	25	1.93
32835328--32835373	16	2.9	16	80	0	56	13	21	10	54	1.69
32841046--32841307	39	6.6	39	85	5	302	26	21	27	24	2.00
32849070--32849292	39	5.7	40	84	8	257	25	22	27	25	2.00
32849070--32849292	79	2.8	80	84	7	285	25	22	27	25	2.00
32849122--32849315	79	2.5	78	85	7	216	25	21	27	25	1.99
32853487--32853547	30	2.0	30	100	0	122	39	16	29	14	1.88
32861279--32861373	28	3.3	29	89	2	140	30	30	12	26	1.93
32861591--32861621	16	1.9	16	100	0	62	12	19	19	48	1.81
32873735--32873793	30	2.0	30	100	0	118	23	20	16	38	1.92
32873912--32873950	10	3.9	10	93	0	60	30	5	15	48	1.66
32880825--32881000	68	2.6	68	79	12	184	21	28	15	34	1.94
32887893--32888022	71	1.9	70	84	7	167	21	31	14	32	1.93
32896400--32896531	47	2.8	47	84	11	173	25	18	30	25	1.98
32899173--32899197	13	1.9	13	100	0	50	24	28	24	24	2.00
32902761--32902890	46	2.8	47	82	14	155	29	31	20	18	1.96
32906264--32906334	35	2.1	35	81	7	83	21	7	15	56	1.63
32911076--32911132	29	2.0	29	89	0	87	26	12	29	31	1.92
32913362--32913433	32	2.3	29	80	17	83	44	9	8	37	1.68
32914055--32914121	23	2.9	23	78	14	75	41	2	0	55	1.15
32914658--32914687	16	1.9	15	93	6	51	40	0	3	56	1.16
32916372--32916400	12	2.3	13	94	5	51	0	27	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32917658--32917708	26	2.0	25	81	11	59	47	17	0	35	1.48
32925983--32926061	37	2.1	37	88	4	115	25	30	18	25	1.98
32926178--32926705	47	11.4	47	92	3	829	29	30	8	31	1.86
32930257--32930439	40	4.6	40	81	6	203	23	26	23	26	2.00
32930745--32930823	29	2.7	29	86	5	106	27	32	15	24	1.95
32930805--32930898	43	2.2	43	100	0	188	26	37	14	21	1.92
32930882--32930925	17	2.8	15	83	12	61	22	36	13	27	1.92
32930841--32930958	60	2.0	60	100	0	236	26	35	13	24	1.93
32932818--32932896	37	2.1	37	88	4	115	25	30	18	25	1.98
32933014--32933443	47	9.2	47	94	0	693	28	30	9	31	1.88
32933014--32933672	94	7.2	94	85	8	892	28	30	8	31	1.88
32933014--32933672	141	4.8	141	89	6	1030	28	30	8	31	1.88
32933406--32933474	30	2.3	30	97	2	129	24	33	11	30	1.91
32933360--32933522	77	2.1	77	96	2	301	27	31	9	31	1.89
32933436--32933672	47	5.0	47	97	0	447	29	30	8	31	1.87
32935023--32935558	47	11.4	47	94	0	883	31	8	30	29	1.87
32935676--32935754	37	2.1	37	88	4	115	25	18	30	25	1.98
32938174--32938206	17	1.9	17	88	11	50	51	6	6	36	1.51
32938735--32939139	66	6.1	65	74	2	227	25	17	25	31	1.97
32938735--32939202	132	3.6	132	83	4	550	25	17	25	31	1.97
32938996--32939269	66	4.2	65	74	6	230	26	18	24	31	1.97
32943357--32943470	43	2.7	43	78	0	138	25	16	25	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32943853--32943892	21	1.9	21	89	0	62	2	50	17	30	1.59
32944273--32944305	13	2.5	13	95	0	57	54	6	3	36	1.41
32947621--32947646	12	2.2	12	100	0	52	30	26	7	34	1.85
32949444--32949669	52	4.3	52	88	3	294	33	0	16	49	1.52
32949544--32949627	9	9.6	9	76	12	68	30	1	17	50	1.54
32952450--32952881	116	3.7	114	82	6	503	32	26	13	27	1.94
32952450--32952881	232	1.9	230	84	3	580	32	26	13	27	1.94
32953007--32953038	15	2.1	16	94	5	57	75	0	0	25	0.81
32953170--32953200	16	1.9	16	93	0	53	38	3	0	58	1.15
32953169--32953212	16	2.7	16	82	3	52	43	2	2	52	1.26
32953315--32953352	7	5.3	7	90	3	58	28	55	0	15	1.41
32953398--32953427	16	1.9	16	93	6	53	40	40	0	20	1.52
32953713--32953760	7	6.7	7	78	4	51	47	27	2	22	1.62
32953710--32953760	15	3.5	15	78	5	59	47	29	1	21	1.62
32959308--32959693	196	2.0	195	96	0	718	39	18	19	23	1.92
32962803--32962857	27	2.0	27	100	0	110	27	21	7	43	1.79
32962860--32962917	29	2.0	29	100	0	116	48	27	0	24	1.51
32963714--32963770	28	2.0	30	82	6	73	49	5	8	36	1.57
32968168--32968295	48	2.7	48	82	4	125	22	18	28	30	1.98
32968213--32968304	48	1.9	48	88	0	130	23	17	29	29	1.97
32968313--32968408	42	2.2	43	80	10	106	26	19	23	30	1.98
32968345--32968426	42	2.0	42	85	4	112	23	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32977114--32977179	21	3.3	21	64	20	59	25	6	42	25	1.78
32977104--32977183	39	2.1	39	100	0	160	27	5	37	30	1.78
32985428--32985479	23	2.3	23	100	0	104	26	9	28	34	1.88
32993979--32994169	40	4.8	40	88	2	260	25	22	26	25	2.00
33019078--33019283	40	5.2	40	90	4	285	24	22	28	25	1.99
33019078--33019293	119	1.8	119	84	7	296	24	22	28	24	2.00
33022630--33022666	15	2.5	15	90	0	56	13	29	24	32	1.93
33024241--33024270	15	1.9	16	93	6	53	43	20	0	36	1.52
33028040--33028288	50	4.8	50	84	4	275	20	29	23	26	1.99
33028039--33028288	100	2.4	104	87	6	348	21	29	23	26	1.99
33028383--33028414	13	2.5	13	94	0	55	56	12	0	31	1.37
33028626--33028683	30	1.9	30	89	0	89	31	24	3	41	1.71
33029557--33029738	28	6.5	28	92	1	276	33	26	12	28	1.92
33031769--33032205	67	6.5	66	75	6	303	25	22	15	36	1.94
33031769--33032205	134	3.3	134	81	3	425	25	22	15	36	1.94
33031783--33032205	201	2.1	201	78	5	444	25	22	15	36	1.93
33050408--33050459	10	4.8	10	77	15	50	78	3	1	15	0.98
33050398--33050464	28	2.3	28	84	5	80	71	4	7	16	1.25
33053454--33053628	49	3.7	49	79	11	152	24	30	18	26	1.98
33053454--33053772	46	6.7	48	71	12	178	24	30	18	27	1.98
33054329--33054400	35	2.1	35	100	0	144	41	19	11	27	1.85
33062982--33063050	27	2.6	27	76	0	75	23	23	11	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33063244--33063305	27	2.3	27	91	0	97	29	24	9	37	1.87
33064834--33064888	29	1.9	28	88	3	83	21	20	25	32	1.97
33078060--33078632	286	2.0	286	100	0	1146	32	12	20	33	1.90
33083821--33083993	45	3.9	45	81	6	192	26	28	21	23	1.99
33083986--33084194	38	5.5	38	91	0	310	31	25	21	21	1.98
33084491--33084617	43	2.9	43	85	2	164	27	29	18	25	1.98
33090014--33090138	45	2.8	45	91	0	178	28	29	23	19	1.98
33090131--33090301	38	4.5	38	85	2	227	33	26	19	19	1.96
33090154--33090301	38	3.9	39	88	5	232	32	26	21	19	1.97
33090598--33090708	45	2.5	46	84	7	149	28	28	15	27	1.96
33090598--33090732	43	3.1	44	81	6	175	28	29	17	24	1.97
33092664--33093168	47	10.6	47	92	2	803	28	29	8	33	1.86
33092664--33093168	96	5.3	96	93	2	847	28	29	8	33	1.86
33092664--33093168	143	3.5	143	94	1	888	28	29	8	33	1.86
33093393--33093535	40	3.6	40	84	7	175	25	27	21	24	1.99
33100708--33100779	5	14.0	5	79	18	78	20	0	1	77	0.84
33100706--33100791	11	7.2	12	79	20	76	23	0	2	74	0.93
33100706--33100779	28	2.8	27	82	17	86	21	0	1	77	0.85
33100708--33100784	32	2.5	31	87	10	113	22	0	1	76	0.86
33100711--33100791	19	4.2	20	77	16	82	22	0	2	75	0.92
33110409--33110455	4	10.8	4	82	17	58	72	0	0	27	0.85
33110405--33110455	18	2.9	17	86	11	68	74	0	0	25	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33115713--33115866	43	3.6	42	76	14	145	25	18	25	30	1.98
33125256--33125309	27	2.0	28	81	3	65	48	3	0	48	1.19
33127011--33127038	3	9.3	3	100	0	56	32	0	0	67	0.91
33134827--33134900	24	3.0	24	86	4	94	21	25	20	32	1.97
33134864--33134918	23	2.3	24	84	9	69	25	23	18	32	1.97
33142565--33142642	23	3.3	23	78	8	77	24	23	16	35	1.95
33147540--33147585	16	2.9	16	87	12	69	52	17	21	8	1.71
33148990--33149040	26	2.0	26	100	0	102	27	7	29	35	1.85
33150662--33150748	27	3.2	26	87	6	129	17	22	25	34	1.96
33152041--33152166	46	2.7	46	93	0	207	21	21	26	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316