genome.fa.s1.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  204  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66404939--66404997	30	2.0	30	100	0	118	27	20	13	38	1.90
66406514--66406546	14	2.4	14	94	0	57	27	21	24	27	1.99
66407158--66407225	25	2.7	25	86	0	91	27	22	19	30	1.97
66407284--66407354	27	2.7	26	84	4	97	49	1	16	32	1.55
66407293--66407354	13	4.7	13	73	11	54	48	1	16	33	1.56
66407293--66407387	40	2.4	39	78	3	100	48	1	13	36	1.50
66407311--66407379	13	5.3	13	79	10	70	46	0	14	39	1.45
66407285--66407393	53	2.1	53	81	10	125	48	0	15	34	1.52
66408949--66409015	25	2.7	24	81	4	89	56	7	19	16	1.63
66411417--66411453	13	2.8	13	95	0	65	59	16	8	16	1.59
66411416--66411459	13	3.4	13	87	0	52	59	18	6	15	1.58
66413445--66413543	43	2.3	42	91	3	153	20	23	36	20	1.95
66418373--66418461	44	2.0	44	100	0	178	32	26	15	24	1.96
66426561--66426606	9	5.1	9	89	0	65	47	10	10	30	1.73
66434670--66434826	43	3.7	43	74	10	126	24	15	26	33	1.95
66438072--66438305	40	5.8	40	86	5	323	25	20	27	26	1.99
66438079--66438305	120	1.9	120	90	3	368	25	21	26	26	1.99
66439201--66439260	30	2.0	30	86	0	84	40	8	23	28	1.83
66455762--66455980	120	1.8	120	93	2	377	24	23	26	26	2.00
66455755--66455981	40	5.7	40	89	5	336	24	22	27	25	2.00
66465512--66465553	19	2.2	19	95	0	75	23	16	7	52	1.68
66466892--66467181	50	5.7	50	81	2	285	31	25	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66466903--66467181	101	2.8	100	82	1	297	31	25	17	25	1.97
66472357--66472435	25	3.3	25	61	10	65	32	5	29	32	1.79
66472341--66472532	47	4.1	47	89	0	285	31	9	31	27	1.89
66472651--66472729	37	2.1	37	88	4	115	25	18	30	25	1.98
66477639--66478028	50	7.7	50	80	1	375	31	26	15	25	1.96
66477650--66477976	100	3.3	100	86	0	420	31	26	15	25	1.96
66477694--66477986	151	1.9	150	86	0	415	31	26	16	25	1.96
66477695--66478030	101	3.3	101	83	1	280	32	26	15	25	1.96
66484019--66484193	46	3.8	45	78	7	190	29	29	20	21	1.98
66484027--66484197	93	1.8	93	92	0	288	28	29	20	21	1.98
66484024--66484213	46	4.1	46	71	18	126	28	29	20	21	1.98
66485901--66485989	30	3.0	30	80	8	101	57	15	16	10	1.65
66485901--66485980	15	5.4	15	80	7	92	58	13	17	10	1.62
66485912--66485989	15	5.2	15	78	9	79	56	15	16	11	1.67
66488070--66488247	27	6.6	27	83	3	205	26	15	28	29	1.96
66488071--66488226	82	1.9	81	88	3	233	26	15	28	29	1.96
66488067--66488247	82	2.2	81	83	2	229	27	15	27	29	1.96
66495978--66496155	27	6.6	27	83	3	205	26	15	28	29	1.96
66495979--66496134	82	1.9	81	88	3	233	26	15	28	29	1.96
66495975--66496155	82	2.2	81	83	2	229	27	15	27	29	1.96
66499898--66500068	93	1.8	93	91	0	279	29	28	19	21	1.98
66499890--66500059	46	3.7	45	77	10	191	31	28	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66507023--66507051	15	1.9	15	100	0	58	41	10	27	20	1.85
66510482--66510553	20	3.6	20	84	0	90	41	27	16	13	1.87
66512418--66512449	12	2.7	12	95	0	55	28	40	0	31	1.57
66514528--66514577	25	2.0	26	92	4	84	34	28	24	14	1.93
66514584--66514678	20	4.8	20	78	2	102	40	22	23	14	1.91
66517000--66517054	28	1.9	29	88	3	85	21	41	20	16	1.90
66521651--66521723	20	3.7	20	86	0	92	32	27	27	12	1.92
66523452--66523524	36	2.0	36	97	0	137	35	31	5	27	1.80
66525505--66525617	43	2.7	42	75	6	111	27	17	23	31	1.97
66536596--66536767	79	2.2	79	82	3	211	25	21	27	25	1.99
66536543--66536765	40	5.6	39	81	7	207	26	21	26	25	1.99
66536623--66536800	79	2.2	80	80	3	191	25	21	28	24	1.99
66543854--66544025	79	2.2	79	84	3	220	25	21	27	25	1.99
66543801--66544023	40	5.6	39	81	8	209	25	21	27	25	1.99
66543881--66544058	79	2.2	80	80	3	191	25	21	28	24	1.99
66551107--66551278	79	2.2	79	82	3	211	25	21	27	25	1.99
66551107--66551276	40	4.3	39	85	5	198	25	21	27	25	2.00
66555021--66555199	39	4.5	39	90	3	245	31	28	20	18	1.97
66556454--66556631	68	2.6	68	87	7	238	34	16	26	22	1.95
66556480--66556673	68	2.8	68	89	2	271	34	16	27	22	1.95
66562843--66562870	8	3.5	8	100	0	56	28	10	14	46	1.78
66563983--66564166	68	2.7	67	82	8	230	32	15	28	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66571004--66571090	40	2.2	39	83	2	111	34	29	18	17	1.94
66572087--66572204	40	3.0	38	81	6	112	35	29	17	16	1.93
66583139--66583191	13	4.1	12	80	9	52	16	3	0	79	0.88
66584709--66584740	12	2.8	12	95	4	57	9	0	6	84	0.78
66584696--66584746	26	1.9	26	88	11	77	11	0	3	84	0.75
66584696--66584747	11	4.9	10	78	19	52	11	0	3	84	0.74
66588444--66588468	13	1.9	13	100	0	50	24	24	32	20	1.98
66610196--66610220	13	1.9	13	100	0	50	40	20	40	0	1.52
66615982--66616153	45	3.8	46	79	13	187	26	20	30	22	1.98
66624103--66624153	16	3.2	16	85	0	66	49	21	19	9	1.77
66624366--66624449	28	3.0	28	96	1	150	27	16	32	23	1.96
66624366--66624476	56	2.0	56	80	7	127	27	16	32	23	1.96
66626069--66626163	40	2.4	40	81	10	106	27	26	15	30	1.96
66628008--66628185	27	6.6	26	82	6	178	26	15	28	29	1.96
66628009--66628164	82	1.9	81	86	3	224	26	16	28	28	1.97
66628005--66628185	82	2.2	81	82	2	220	27	16	27	29	1.97
66636120--66636240	27	4.5	26	83	4	116	27	14	27	30	1.95
66636119--66636240	54	2.3	55	84	4	158	27	14	27	30	1.95
66642307--66642395	43	2.1	43	85	2	117	26	19	21	32	1.97
66644590--66644663	37	2.0	37	100	0	148	29	8	32	29	1.86
66652836--66652893	27	2.1	28	83	3	73	22	20	17	39	1.92
66655376--66655488	27	4.2	26	85	5	136	17	23	21	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66655388--66655495	53	2.0	54	80	5	121	18	25	19	37	1.94
66658703--66658829	64	2.0	64	98	1	247	22	18	1	57	1.49
66659731--66659870	27	5.3	27	90	3	178	18	22	21	37	1.94
66659731--66659886	80	2.0	80	82	5	190	19	23	20	35	1.96
66660806--66660891	28	3.0	28	81	8	102	20	36	16	26	1.94
66669020--66669169	67	2.2	67	81	8	171	32	17	28	21	1.96
66669044--66669226	67	2.8	64	77	8	192	30	16	30	22	1.96
66671487--66671592	29	3.7	29	84	3	144	25	31	16	27	1.96
66671815--66671850	16	2.2	16	90	0	54	11	19	13	55	1.68
66671820--66671865	24	1.9	24	90	0	74	13	19	15	52	1.75
66673089--66673119	16	1.9	16	100	0	62	22	6	19	51	1.69
66677820--66678060	40	6.1	40	90	2	353	26	27	22	22	1.99
66684165--66684342	27	6.6	27	82	3	178	30	26	14	27	1.95
66685155--66685194	20	2.0	21	85	5	55	40	5	5	50	1.46
66699736--66699856	43	2.8	43	92	1	190	30	28	18	23	1.97
66715878--66716045	40	4.2	40	80	1	149	25	26	23	24	2.00
66720656--66720806	37	4.1	37	94	1	259	25	31	17	24	1.97
66720936--66721515	48	12.0	48	91	0	872	31	23	6	37	1.81
66726160--66726184	13	1.9	13	100	0	50	32	4	24	40	1.73
66727264--66727446	42	4.3	42	84	5	217	26	17	22	33	1.96
66727265--66727470	85	2.4	86	84	7	276	25	16	24	33	1.96
66727265--66727470	42	4.8	42	80	5	202	25	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66731837--66731913	27	3.0	25	77	12	68	23	22	19	35	1.96
66731903--66731959	24	2.4	23	85	8	71	22	29	15	31	1.95
66731950--66732018	24	2.9	24	86	2	95	20	18	20	40	1.92
66741133--66741188	28	2.0	28	100	0	112	32	17	25	25	1.97
66758368--66758416	20	2.4	21	82	6	64	71	0	10	18	1.13
66759141--66759252	24	4.6	25	75	15	110	29	16	29	25	1.96
66759118--66759228	48	2.3	47	84	6	134	27	17	29	26	1.97
66763694--66764096	27	15.0	26	76	5	306	39	16	16	27	1.91
66763723--66764094	54	6.9	54	85	3	425	39	15	16	27	1.90
66763694--66764094	81	5.0	81	81	4	391	39	16	16	27	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316