genome.fa.s1.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  128  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40665862--40665889	14	2.0	14	100	0	56	42	21	7	28	1.79
40665961--40665991	16	1.9	16	93	0	53	35	22	0	41	1.54
40665958--40665997	20	2.0	20	85	0	53	37	22	0	40	1.54
40678088--40678113	11	2.4	11	100	0	52	19	42	0	38	1.51
40679463--40679534	25	2.9	25	80	0	81	36	19	23	20	1.95
40679642--40679691	23	2.2	23	81	0	55	34	18	28	20	1.95
40681357--40681399	16	2.8	15	86	6	59	76	2	0	20	0.89
40681353--40681405	23	2.3	22	81	9	61	69	1	0	28	0.99
40683674--40683724	22	2.3	22	96	0	93	15	7	27	49	1.72
40686070--40686247	27	6.6	27	83	3	205	26	15	28	29	1.96
40686071--40686226	82	1.9	81	88	3	233	26	15	28	29	1.96
40686067--40686247	82	2.2	81	83	2	229	27	15	27	29	1.96
40694262--40694439	27	6.6	27	83	3	196	26	15	28	29	1.96
40694263--40694418	82	1.9	81	88	3	233	26	15	28	28	1.96
40694259--40694439	82	2.2	81	83	2	229	27	15	28	29	1.96
40696221--40696512	48	6.0	48	77	8	279	25	17	28	28	1.98
40698245--40698301	20	3.2	20	63	31	56	19	31	36	12	1.89
40698232--40698301	33	2.1	33	97	0	131	21	28	38	11	1.88
40703754--40703937	64	2.8	64	81	8	221	23	29	16	29	1.96
40706420--40706557	48	2.9	47	90	2	195	24	18	30	26	1.98
40707943--40708021	41	1.9	41	97	0	149	35	12	18	32	1.89
40709486--40709592	54	2.0	54	84	0	142	53	7	12	27	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40711239--40711286	11	4.6	10	82	7	60	16	8	6	68	1.35
40711239--40711286	21	2.3	21	85	0	69	16	8	6	68	1.35
40713005--40713396	198	2.0	198	95	0	712	34	16	8	39	1.80
40714093--40714299	53	3.8	53	74	8	159	20	24	18	36	1.95
40719570--40719776	53	3.8	53	76	4	182	20	24	17	37	1.94
40719623--40719768	55	2.7	52	77	5	139	21	23	17	37	1.94
40719553--40719776	54	4.2	53	73	5	173	20	24	16	38	1.92
40720133--40720166	14	2.4	14	90	0	50	14	29	11	44	1.81
40721131--40721186	26	2.2	26	100	0	112	30	7	26	35	1.83
40722810--40722950	27	5.2	26	84	6	183	17	24	23	34	1.96
40722810--40722950	54	2.6	53	93	2	228	17	24	23	34	1.96
40742899--40742956	23	2.6	22	77	2	62	34	6	3	55	1.44
40743389--40743417	5	6.0	5	96	4	51	20	0	0	79	0.74
40746349--40746415	24	2.8	24	83	2	89	41	19	22	16	1.90
40760614--40760687	36	2.1	36	82	12	91	56	21	10	10	1.64
40761762--40761795	18	1.9	17	94	5	59	23	11	0	64	1.26
40764906--40764985	39	2.1	39	97	0	151	30	11	22	36	1.89
40798567--40798847	33	8.6	32	77	8	190	36	11	21	30	1.89
40798568--40798811	98	2.5	98	80	5	278	36	10	20	32	1.87
40805325--40805349	13	1.9	13	100	0	50	40	0	56	4	1.18
40808275--40808321	22	2.1	22	81	14	53	21	21	2	55	1.54
40812616--40812716	29	3.5	28	90	1	148	25	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40820428--40820528	29	3.5	28	90	1	148	25	14	28	30	1.95
40828495--40828535	13	2.8	15	78	14	50	43	7	12	36	1.70
40831118--40831169	25	2.1	25	100	0	104	42	15	15	26	1.87
40831630--40831681	25	2.1	25	100	0	104	42	15	15	26	1.87
40836758--40836872	27	4.3	26	87	5	149	36	23	23	16	1.94
40836758--40836872	54	2.1	54	88	3	169	36	23	23	16	1.94
40837284--40837313	16	1.9	15	93	6	51	3	20	23	53	1.60
40838488--40838596	26	4.2	26	91	3	159	36	23	4	34	1.76
40843691--40843735	23	2.0	23	82	8	56	40	13	8	37	1.76
40847415--40847448	17	1.9	18	88	5	52	32	0	14	52	1.42
40848598--40848641	8	5.4	8	84	12	54	84	0	6	9	0.79
40848884--40848934	5	10.2	5	77	14	52	15	3	1	78	0.99
40849813--40849850	19	2.0	19	94	0	67	31	23	10	34	1.89
40863730--40863906	27	6.6	27	86	3	214	30	27	14	27	1.95
40863751--40863905	81	1.9	80	89	3	240	30	27	14	27	1.95
40871866--40872043	27	6.6	27	83	3	187	30	27	14	27	1.95
40871887--40872042	82	1.9	81	88	3	233	30	27	14	27	1.95
40875111--40875159	26	1.9	24	84	12	62	69	0	6	24	1.11
40880116--40880256	68	2.1	67	79	10	144	20	23	20	35	1.96
40882645--40882850	40	5.2	40	92	0	333	29	25	22	22	1.99
40884226--40884251	13	2.0	13	100	0	52	61	7	0	30	1.24
40886596--40886771	38	4.6	38	86	1	208	23	22	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40887720--40887949	48	5.0	48	73	16	198	27	19	25	28	1.98
40892120--40892242	22	5.3	22	64	27	67	31	13	30	25	1.93
40892048--40892312	47	5.6	47	92	0	424	33	10	29	27	1.90
40892306--40892394	46	1.9	46	83	0	115	33	11	31	23	1.90
40892542--40892650	37	2.9	37	95	0	191	22	19	31	26	1.98
40896890--40896927	15	2.5	15	95	0	67	31	21	15	31	1.94
40904379--40904407	13	2.1	14	93	6	51	48	20	3	27	1.66
40906364--40906425	32	2.0	31	81	12	74	51	1	4	41	1.33
40909827--40909871	22	2.0	22	84	16	58	46	11	0	42	1.39
40910274--40910344	35	2.0	35	100	0	142	43	22	14	19	1.87
40914315--40914343	5	5.8	5	100	0	58	82	0	0	17	0.66
40934878--40934932	25	2.2	25	100	0	110	38	12	25	23	1.90
40939431--40939461	14	2.2	14	94	0	53	35	6	16	41	1.74
40939445--40939490	19	2.3	20	96	3	85	23	10	17	47	1.79
40942147--40942194	25	1.9	25	86	0	69	58	2	37	2	1.22
40942889--40943053	75	2.2	75	96	0	303	48	10	15	25	1.77
40944467--40944522	23	2.4	23	93	0	94	19	10	23	46	1.81
40946235--40946265	16	1.9	16	93	0	53	41	12	16	29	1.85
40949063--40949103	21	2.0	21	90	0	64	29	21	29	19	1.98
40951021--40951051	16	1.9	16	93	0	53	41	12	16	29	1.85
40953632--40953857	112	2.0	112	97	0	425	27	14	22	35	1.93
40965485--40965528	19	2.1	21	84	12	56	29	15	20	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40969786--40969912	47	2.7	45	77	14	134	29	18	27	23	1.98
40982415--40982494	41	2.0	39	92	4	133	51	7	5	36	1.52
40982586--40982615	15	2.1	15	93	6	53	70	3	6	20	1.25
40982639--40982687	11	4.5	11	80	14	66	36	0	32	30	1.58
40982639--40982687	21	2.3	22	86	10	66	36	0	32	30	1.58
40982644--40982696	21	2.5	21	80	17	65	39	0	32	28	1.57
40988741--40988784	19	2.1	21	84	12	56	34	20	15	29	1.94
40992881--40992914	16	2.1	16	88	0	50	50	14	17	17	1.79
41011994--41012120	47	2.7	45	77	14	134	29	18	27	23	1.98
41013808--41013857	11	4.7	11	82	9	68	30	32	0	38	1.58
41013800--41013857	20	2.7	21	84	10	73	31	29	0	39	1.57
41014005--41014092	44	2.0	44	97	0	167	31	4	7	55	1.49
41016163--41016347	79	2.3	81	84	7	236	24	22	27	25	2.00
41016164--41016347	40	4.6	40	83	9	216	24	22	27	25	2.00
41016216--41016380	79	2.1	79	84	6	210	26	21	27	25	1.99
41024059--41024243	79	2.3	81	83	7	227	24	22	27	25	2.00
41024059--41024243	40	4.6	41	82	7	222	24	22	27	25	2.00
41024111--41024276	79	2.1	79	81	6	194	26	21	25	26	1.99
41028144--41028670	126	4.2	126	89	1	799	27	21	17	33	1.96
41028728--41028954	96	2.3	98	84	5	282	40	16	1	41	1.58
41028948--41028992	15	2.8	17	83	10	67	51	22	0	26	1.49
41034676--41034736	30	2.0	30	83	0	77	31	22	8	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41040770--41040901	40	3.4	39	74	12	126	30	23	19	26	1.98
41042697--41042735	20	2.0	20	84	0	51	51	0	2	46	1.14
41043190--41043224	15	2.2	16	90	5	54	51	0	0	48	1.00
41057736--41057774	20	2.0	20	84	0	51	25	5	2	66	1.25
41060693--41060744	24	2.2	24	89	0	77	55	9	1	32	1.43
41062663--41062714	24	2.2	24	89	0	77	55	9	1	32	1.43
41069711--41069775	32	2.0	32	84	0	85	44	4	9	41	1.57
41069856--41069920	32	2.0	32	84	0	85	44	4	9	41	1.57
41069681--41070087	145	2.8	145	92	1	687	40	11	10	37	1.75
41070000--41070056	28	2.0	28	86	0	78	43	5	8	42	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316