genome.fa.s1.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  194  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62808432--62808587	82	1.9	81	88	3	233	26	15	28	29	1.96
62808428--62808608	82	2.2	81	83	2	229	27	15	27	29	1.96
62811127--62811155	14	2.0	15	93	6	51	24	20	6	48	1.74
62813546--62813704	43	3.7	41	75	13	135	23	20	26	30	1.98
62820835--62820968	42	3.2	41	76	13	130	30	29	17	22	1.96
62820807--62820968	86	1.9	85	86	6	229	29	29	17	23	1.97
62823034--62823175	67	2.1	67	88	5	203	30	22	28	18	1.97
62823105--62823156	27	2.0	26	84	3	68	34	21	26	17	1.95
62823752--62823805	27	2.0	27	85	3	74	35	20	22	22	1.96
62823807--62823977	27	6.4	27	83	2	168	26	19	16	37	1.93
62830602--62830661	27	2.3	26	85	2	75	35	20	23	21	1.96
62830629--62830770	67	2.1	67	85	5	185	30	21	28	19	1.97
62832222--62832406	40	4.7	40	83	6	225	25	28	22	23	1.99
62832222--62832406	79	2.3	81	81	8	218	25	28	22	23	1.99
62839942--62840124	40	4.7	40	83	7	216	25	28	21	24	1.99
62839942--62840124	78	2.3	79	79	11	205	25	28	21	24	1.99
62847992--62848174	79	2.3	80	84	7	230	25	27	22	24	2.00
62847990--62848174	40	4.7	40	83	7	234	25	28	22	23	2.00
62860997--62861145	75	2.0	75	98	0	289	30	16	21	30	1.96
62870796--62871913	559	2.0	558	88	2	1640	34	18	15	32	1.92
62875545--62875596	6	8.3	6	84	16	70	15	1	1	80	0.88
62878371--62878715	47	7.4	47	88	5	459	33	8	30	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62881144--62881218	38	2.0	38	86	5	107	30	18	26	24	1.98
62881276--62881595	40	8.0	40	89	0	451	24	21	27	26	1.99
62883036--62883211	46	3.8	45	76	12	187	22	21	27	28	1.99
62887724--62888068	47	7.4	47	89	5	468	33	8	30	27	1.87
62890096--62890164	27	2.6	27	90	0	102	26	14	28	30	1.95
62898013--62898190	27	6.6	27	82	3	196	26	15	27	29	1.96
62898010--62898190	82	2.2	81	82	2	220	27	16	27	29	1.96
62905108--62905201	48	2.0	48	85	8	129	20	12	26	40	1.88
62905659--62905831	46	3.7	46	73	13	165	20	22	28	28	1.98
62905651--62905823	93	1.9	93	90	0	274	20	23	28	27	1.99
62913299--62913427	46	2.8	46	93	0	213	17	21	31	29	1.97
62924040--62924081	21	2.0	21	100	0	84	33	19	33	14	1.91
62926448--62926567	51	2.4	51	91	0	186	38	12	22	26	1.90
62935217--62935265	24	2.0	24	100	0	98	51	12	12	24	1.73
62940510--62940544	17	2.1	17	100	0	70	31	28	5	34	1.81
62941214--62941274	27	2.2	28	75	13	65	24	13	13	49	1.77
62941445--62941481	19	1.9	19	88	0	56	21	5	2	70	1.20
62943516--62943744	48	4.8	48	84	1	262	30	24	17	27	1.97
62949425--62949479	27	2.0	27	93	6	94	40	10	7	41	1.68
62951396--62951448	20	2.8	18	77	11	52	67	1	22	7	1.25
62952557--62952601	22	2.0	23	91	8	74	20	17	11	51	1.75
62955180--62955537	48	7.3	48	91	4	581	34	6	28	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62955678--62955780	37	2.8	37	96	0	188	23	20	32	24	1.98
62956880--62956994	56	2.0	58	84	5	153	26	11	14	46	1.79
62957554--62957587	10	3.3	10	84	8	50	20	8	14	55	1.65
62959964--62960148	40	4.7	40	82	8	173	24	27	22	25	2.00
62959992--62960148	79	2.0	80	83	6	203	24	28	22	24	2.00
62966719--62966759	21	1.9	22	95	5	75	36	19	14	29	1.92
62968141--62968323	79	2.3	81	83	7	223	24	27	22	24	2.00
62968120--62968323	40	5.1	40	81	8	229	24	27	22	25	2.00
62971136--62971167	15	2.0	17	88	11	50	43	31	0	25	1.55
62973216--62973351	40	3.4	39	77	10	132	35	27	14	22	1.93
62975185--62975218	17	2.0	17	88	0	50	23	17	0	58	1.38
62984368--62984405	16	2.3	17	86	4	51	47	7	2	42	1.46
62988375--62988475	29	3.5	29	90	1	150	29	28	14	26	1.95
62996390--62996490	29	3.5	29	85	4	125	30	27	14	26	1.95
63014335--63014435	29	3.5	29	85	4	125	30	27	14	26	1.95
63019270--63019336	33	2.0	33	97	0	125	37	17	22	22	1.94
63040141--63040323	51	3.6	51	79	2	172	26	21	24	27	1.99
63040633--63040662	16	1.9	15	93	6	51	43	0	23	33	1.54
63045311--63045594	50	5.7	50	76	2	255	29	25	17	27	1.97
63045300--63045589	100	2.9	102	83	1	361	29	25	17	27	1.98
63046380--63046455	38	2.0	38	97	0	143	32	13	22	31	1.92
63047642--63047786	40	3.6	40	84	4	184	25	24	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63049199--63049245	19	2.3	20	82	10	60	48	14	0	36	1.44
63052866--63052982	42	2.8	42	86	0	153	30	26	15	27	1.96
63058441--63058482	21	2.0	21	90	0	66	73	4	0	21	1.01
63065193--63065235	22	2.0	22	81	9	52	72	0	2	25	0.97
63066304--63066897	23	26.0	23	75	10	421	38	24	6	30	1.81
63066304--63066812	252	2.0	253	93	0	867	37	24	6	31	1.81
63066466--63066897	160	2.7	160	85	4	552	38	23	6	31	1.80
63070373--63070400	8	3.5	8	100	0	56	21	0	0	78	0.75
63070360--63070400	16	2.6	16	88	0	55	24	0	4	70	1.06
63071324--63071390	7	9.4	7	77	3	62	46	29	1	22	1.61
63072336--63072444	37	2.9	37	93	2	175	27	31	18	22	1.97
63072594--63072888	50	5.9	50	92	5	456	30	25	7	36	1.83
63072594--63072888	98	3.0	98	91	4	475	30	25	7	36	1.83
63076340--63076697	40	9.0	40	87	1	522	27	30	20	21	1.98
63076352--63076697	119	2.9	119	87	1	541	27	30	20	21	1.98
63076336--63076697	79	4.6	80	96	0	647	27	30	20	21	1.98
63077955--63078063	37	2.9	37	91	0	173	26	31	20	22	1.98
63078441--63078497	15	3.7	15	75	9	60	40	15	1	42	1.58
63078438--63078503	32	2.1	32	100	0	132	37	19	3	39	1.67
63078456--63078503	15	2.9	17	72	12	55	37	16	4	41	1.68
63078386--63078547	84	1.9	84	96	0	297	35	21	3	38	1.71
63078288--63078645	184	2.0	181	91	4	576	32	23	5	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63078470--63078659	50	3.7	50	94	2	317	32	23	7	36	1.83
63081070--63081268	41	4.9	41	81	0	220	21	20	24	34	1.96
63081233--63081305	35	2.1	35	84	5	94	19	17	23	39	1.92
63087164--63087206	21	2.0	21	86	0	59	13	16	11	58	1.64
63088589--63088766	48	3.7	48	89	0	248	19	16	26	37	1.93
63101304--63101421	40	2.9	39	92	2	182	31	29	16	22	1.96
63115463--63115708	51	4.9	51	82	9	292	30	25	17	26	1.98
63115482--63115712	100	2.3	100	98	0	444	30	25	17	26	1.97
63116361--63116420	30	2.0	30	83	6	77	30	25	8	36	1.85
63118465--63118503	15	2.5	15	87	4	51	53	15	15	15	1.73
63118838--63118939	51	2.0	51	100	0	204	27	27	1	43	1.66
63118846--63118926	24	3.2	24	64	16	65	27	24	2	45	1.66
63120190--63120267	39	2.0	39	100	0	156	38	17	12	30	1.88
63121311--63121561	51	5.0	50	84	3	310	30	26	18	25	1.98
63121322--63121560	100	2.4	100	93	0	397	30	25	18	25	1.98
63123183--63123213	16	1.9	16	93	0	53	35	22	0	41	1.54
63123180--63123219	20	2.0	20	85	0	53	37	22	0	40	1.54
63123405--63123658	55	4.8	54	77	12	226	21	25	16	36	1.94
63125145--63125208	30	2.1	30	94	5	112	37	15	3	43	1.63
63126302--63126347	20	2.3	20	88	0	65	21	6	10	60	1.52
63126310--63126353	20	2.2	20	91	0	70	20	4	9	65	1.38
63129707--63129737	15	2.1	15	93	0	53	19	0	25	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63133648--63133747	40	2.5	40	81	9	109	25	26	23	26	2.00
63141858--63141957	40	2.5	40	81	9	109	26	26	23	25	2.00
63159760--63159868	52	2.1	52	94	0	191	32	6	19	42	1.76
63159923--63160140	45	5.0	42	76	7	152	23	16	26	32	1.96
63159926--63160050	45	2.8	45	87	0	169	23	16	25	34	1.95
63162071--63162218	43	3.5	42	72	11	122	28	24	19	27	1.99
63169294--63169441	43	3.5	42	72	11	122	29	24	19	27	1.99
63181437--63181515	37	2.1	37	92	0	131	25	30	18	25	1.98
63181636--63181985	49	7.2	49	93	2	575	29	30	8	31	1.87
63181910--63182060	74	2.0	75	97	1	286	29	28	11	30	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316