genome.fa.s1.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  36  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10310449--10310511	29	2.2	29	94	0	108	15	9	26	47	1.76
10313926--10313998	36	2.0	36	100	0	146	52	10	19	17	1.74
10316945--10317007	6	10.5	6	85	0	81	76	3	1	19	1.01
10318665--10318780	5	23.2	5	67	18	55	72	1	5	20	1.13
10322587--10322628	12	3.4	12	80	12	50	71	2	2	23	1.10
10329762--10329844	33	2.5	33	84	1	105	25	26	33	14	1.94
10340055--10340119	21	3.1	21	80	8	71	35	0	7	56	1.28
10340071--10340119	20	2.5	20	86	6	64	36	0	6	57	1.24
10340105--10340153	3	17.3	3	76	19	52	28	2	0	69	1.00
10340109--10340147	11	3.5	11	92	0	69	28	2	0	69	1.02
10340105--10340146	19	2.2	19	87	8	59	26	2	0	71	0.98
10342299--10342411	23	4.8	22	71	20	86	15	28	22	33	1.95
10342299--10342416	48	2.5	48	75	15	120	17	27	21	33	1.96
10356772--10356804	17	1.9	17	88	11	50	36	3	0	60	1.12
10363163--10363203	21	2.0	21	85	0	55	26	0	4	68	1.10
10364769--10364820	21	2.6	19	74	14	52	69	0	7	23	1.14
10365850--10365905	27	2.1	27	100	0	112	21	17	37	23	1.94
10371925--10372016	27	3.2	28	80	9	98	53	5	6	34	1.50
10372132--10372158	12	2.2	12	100	0	54	62	14	0	22	1.31
10372545--10372577	3	11.0	3	93	0	57	63	0	3	33	1.10
10372534--10372577	15	2.9	15	89	0	61	59	4	4	31	1.38
10372636--10372674	15	2.8	13	85	14	60	64	0	5	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10374491--10374523	15	2.2	15	94	0	57	69	3	6	21	1.24
10374592--10374845	89	2.9	86	87	4	330	36	20	17	25	1.94
10374744--10374778	13	2.6	14	86	9	54	65	2	11	20	1.37
10374761--10375218	75	6.2	72	81	7	501	34	20	17	28	1.95
10374799--10375206	146	2.8	146	84	6	538	32	21	16	29	1.96
10387701--10387792	27	3.2	28	80	9	98	53	5	6	34	1.50
10388164--10388209	21	2.2	21	88	7	67	60	4	2	32	1.28
10393131--10393163	17	1.9	17	93	0	57	21	6	0	72	1.05
10404602--10404632	6	5.2	6	92	0	53	19	16	64	0	1.29
10410618--10410648	1	31.0	1	93	0	53	96	0	0	3	0.21
10410590--10410645	11	5.2	11	76	2	51	82	1	3	12	0.88
10410660--10411237	4	143.0	4	73	17	263	26	0	73	0	0.87
10410685--10410727	1	43.0	1	80	0	50	9	0	90	0	0.45
10410756--10410797	1	42.0	1	100	0	84	0	0	100	0	0.00
10410651--10411241	66	9.0	67	73	16	359	26	0	72	0	0.88
10410801--10411243	90	4.9	92	77	16	375	28	0	70	0	0.92
10411171--10411243	2	36.5	2	80	0	56	35	0	64	0	0.94
10412566--10412590	6	4.2	6	100	0	50	20	0	0	80	0.72
10414968--10415019	22	2.3	23	80	9	63	51	25	3	19	1.63
10424043--10424096	24	2.2	24	90	0	81	40	1	7	50	1.41
10431385--10431478	40	2.3	40	90	0	143	23	20	25	30	1.98
10431421--10431543	40	3.0	40	88	4	158	26	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10431468--10431552	42	2.0	42	100	0	170	28	17	23	30	1.97
10435502--10435573	25	3.0	25	83	6	85	37	20	22	19	1.94
10435550--10435677	64	2.0	64	84	0	166	35	23	19	21	1.95
10437163--10437203	6	6.5	6	83	10	55	17	0	4	78	0.93
10437168--10437217	20	2.4	21	86	6	66	26	0	4	70	1.05
10439638--10439737	46	2.2	46	88	0	155	38	18	20	24	1.93
10439663--10439747	23	3.7	23	78	6	100	36	18	20	24	1.95
10452009--10452057	25	2.0	25	100	0	98	20	36	18	24	1.94
10452007--10452063	25	2.3	25	90	0	96	24	33	17	24	1.96
10480150--10480304	53	2.9	54	87	5	224	45	18	22	13	1.85
10481828--10481928	43	2.3	43	82	1	121	31	15	28	23	1.96
10481849--10481952	43	2.4	45	86	3	140	28	14	26	29	1.95
10481405--10482190	176	4.5	174	78	8	792	31	17	23	27	1.96
10487781--10487849	27	2.6	27	92	0	111	30	18	18	31	1.96
10488415--10488455	20	2.0	20	100	0	82	41	19	0	39	1.52
10495410--10495482	27	2.7	27	82	2	85	31	16	17	34	1.93
10499215--10499363	23	6.5	23	75	3	120	35	19	20	24	1.95
10499265--10499363	46	2.2	46	90	3	155	36	22	18	23	1.95
10504930--10505027	30	3.3	30	78	16	89	43	3	0	53	1.16
10507734--10507767	2	17.5	2	87	6	52	47	2	0	50	1.16
10508815--10509063	131	1.9	131	89	1	383	29	18	18	32	1.95
10519683--10520346	180	3.7	174	81	8	695	29	24	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10519683--10520346	177	3.7	174	81	7	696	29	24	16	30	1.96
10520313--10520435	44	2.8	45	70	18	112	28	22	19	29	1.98
10520212--10520673	234	2.0	235	79	5	515	26	23	17	32	1.97
10520855--10521109	64	4.0	64	92	0	411	38	13	17	31	1.88
10522941--10522981	9	4.6	9	93	6	66	0	2	7	90	0.54
10533747--10534281	44	12.2	44	85	3	700	28	15	29	25	1.96
10537167--10537415	131	1.9	131	92	1	419	30	19	17	32	1.95
10537573--10537811	130	1.8	130	81	3	302	25	19	19	35	1.96
10538635--10538727	31	3.1	30	74	10	82	41	5	25	26	1.77
10545710--10545764	18	3.1	18	83	0	74	41	18	21	18	1.90
10549139--10549178	21	1.9	21	89	0	62	27	32	17	22	1.96
10549521--10549785	131	2.0	131	98	0	512	30	18	9	41	1.82
10552408--10552509	50	2.0	50	85	7	136	35	4	16	43	1.70
10553239--10553362	30	4.1	30	93	1	203	25	24	6	43	1.78
10553249--10553356	15	7.2	15	67	12	78	25	22	7	44	1.79
10557930--10558053	30	4.1	30	91	1	194	25	23	6	44	1.77
10559475--10559527	18	2.9	18	75	11	54	33	1	0	64	1.05
10560281--10560314	14	2.3	15	85	10	52	38	0	8	52	1.33
10560770--10560795	12	2.2	12	100	0	52	30	0	0	69	0.89
10562424--10562476	26	2.1	26	96	3	99	52	9	22	15	1.70
10567301--10567385	2	42.5	2	100	0	170	0	0	49	50	1.00
10572124--10572154	15	2.1	15	93	0	53	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10572709--10572784	31	2.5	31	83	8	86	50	13	5	31	1.63
10572733--10572816	31	2.7	31	85	1	107	44	10	8	36	1.70
10576550--10576585	2	18.0	2	100	0	72	0	50	0	50	1.00
10581795--10581834	21	1.9	21	100	0	80	32	0	20	47	1.50
10584074--10587054	744	4.0	744	98	0	5647	36	12	18	32	1.87
10591459--10591486	9	3.1	9	100	0	56	32	0	32	35	1.58
10592527--10592639	49	2.3	49	83	5	142	26	12	21	39	1.88
10594467--10594504	15	2.5	15	87	8	51	21	34	5	39	1.76
10596135--10596159	11	2.3	11	100	0	50	24	8	16	52	1.70
10598733--10598773	12	3.4	12	89	0	64	7	24	39	29	1.82
10608046--10608135	45	2.0	45	93	0	153	43	16	13	26	1.85
10610171--10610241	36	2.0	36	82	0	88	28	7	19	45	1.76
10610898--10610995	34	2.9	35	86	6	121	33	4	14	47	1.63
10610895--10610977	17	4.9	17	83	2	96	34	4	15	44	1.68
10610915--10610999	17	5.0	17	74	5	73	31	4	14	49	1.63
10614551--10614594	20	2.3	18	84	7	52	6	6	43	43	1.57
10616405--10616434	15	2.0	15	93	0	51	16	0	36	46	1.47
10616509--10616929	126	3.3	126	87	2	630	33	18	20	27	1.96
10619944--10620673	116	6.3	116	95	0	1264	46	9	3	39	1.54
10619944--10620673	347	2.1	348	94	0	1273	46	9	3	39	1.54
10621057--10621096	18	2.2	18	90	0	62	45	10	30	15	1.78
10621146--10621202	30	1.9	30	85	7	80	10	19	40	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10621707--10621733	7	3.9	7	100	0	54	59	14	0	25	1.36
10621699--10621732	14	2.4	14	90	0	50	64	8	0	26	1.22
10622835--10622865	15	2.1	15	100	0	62	74	0	6	19	1.03
10622881--10622924	22	2.0	22	82	8	54	43	2	25	29	1.67
10627891--10627943	26	1.9	27	81	11	63	50	0	7	41	1.30
10628083--10628113	6	5.2	6	100	0	62	48	0	0	51	1.00
10630030--10630059	14	2.1	14	100	0	60	0	13	0	86	0.57
10643176--10643235	22	2.8	20	82	10	66	43	6	8	41	1.61
10643416--10643497	22	4.0	22	63	18	59	32	10	15	40	1.83
10648918--10648965	17	2.8	17	81	9	53	54	12	0	33	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316