Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  304  of  316  ( 37835 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100038929--100038967
19
2.1
19
100
0
78
33
20
10
35
1.86
100045444--100045539
42
2.3
43
83
5
124
29
16
23
30
1.96
100048222--100048278
5
10.6
5
81
10
51
75
5
0
19
0.99
100048918--100048954
18
2.1
18
100
0
74
32
21
10
35
1.88
100049910--100049950
20
2.0
20
85
4
55
60
2
4
31
1.30
100052328--100052501
24
6.8
25
66
26
73
32
5
1
60
1.30
100052381--100052452
23
3.1
23
80
4
83
31
4
1
62
1.23
100063338--100063475
68
2.0
69
83
4
172
44
22
10
22
1.82
100065907--100065979
33
2.2
33
92
2
121
41
12
0
46
1.41
100067777--100067890
57
2.0
55
81
10
131
17
18
12
51
1.75
100071508--100071547
11
3.5
11
80
6
53
62
5
0
32
1.17
100071509--100071549
12
3.5
12
80
6
57
63
4
0
31
1.15
100071500--100071550
23
2.2
23
100
0
102
62
3
0
33
1.13
100073483--100073900
176
2.4
176
78
5
477
30
24
15
29
1.95
100076093--100076221
50
2.5
51
87
7
199
35
17
22
24
1.95
100076192--100076345
31
5.0
31
92
0
245
26
18
28
25
1.98
100077917--100077981
31
2.1
31
85
0
85
38
6
9
46
1.61
100081669--100081711
21
2.0
21
95
0
77
30
4
20
44
1.72
100084318--100084364
15
3.3
14
80
11
51
51
0
0
48
1.00
100084322--100084358
16
2.3
16
86
13
58
59
0
0
40
0.97
100085393--100085432
16
2.5
17
84
12
57
40
0
2
57
1.12
100085663--100085723
33
1.9
30
83
9
77
40
0
3
55
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100085980--100086021
15
2.8
15
79
20
52
66
0
9
23
1.21
100086764--100086855
44
2.1
44
82
8
107
20
19
23
35
1.95
100086825--100086944
47
2.5
47
75
5
116
22
20
25
32
1.98
100088172--100088226
29
2.0
27
82
7
65
40
0
0
60
0.97
100089642--100089724
41
2.0
41
100
0
166
19
19
31
30
1.96
100101706--100101873
47
3.6
47
90
0
255
26
12
17
44
1.84
100101848--100101898
25
2.0
25
96
0
93
21
11
17
49
1.79
100102172--100102212
15
2.7
15
92
0
64
17
9
36
36
1.82
100103854--100103949
42
2.3
42
85
0
129
28
11
18
41
1.85
100103964--100104021
26
2.2
26
78
0
62
29
6
12
51
1.65
100104701--100104754
21
2.6
21
87
0
72
25
38
11
24
1.88
100105143--100105198
23
2.4
24
85
5
71
30
12
12
44
1.79
100105301--100105359
30
2.0
30
83
6
77
49
20
5
25
1.69
100105656--100105732
38
2.0
38
94
0
136
28
22
16
32
1.96
100105840--100105901
15
4.2
15
72
4
54
1
30
0
67
1.00
100111083--100111155
31
2.3
32
83
6
87
42
0
4
53
1.20
100111107--100111192
31
2.7
30
83
13
102
41
1
5
51
1.33
100111107--100111173
27
2.3
31
82
14
81
44
0
4
50
1.22
100118191--100118252
28
2.4
27
82
12
76
43
3
1
51
1.27
100120523--100120556
18
2.0
16
88
11
50
52
5
0
41
1.25
100124133--100124194
10
6.6
9
74
15
54
72
1
0
25
0.94
100124136--100124195
19
3.2
20
80
13
67
71
1
0
26
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100124126--100124194
29
2.4
29
85
2
86
69
1
0
28
0.97
100124135--100124250
9
12.6
9
72
14
58
66
0
1
31
1.08
100124733--100124784
21
2.4
22
80
3
61
7
13
11
67
1.42
100125215--100125256
12
3.6
11
87
9
57
23
2
4
69
1.20
100125263--100125316
26
2.0
26
85
3
72
29
3
5
61
1.36
100126997--100127033
12
3.1
12
88
0
56
59
8
32
0
1.27
100126997--100127031
18
1.9
18
88
0
52
57
8
34
0
1.29
100127898--100127922
10
2.5
10
100
0
50
48
8
0
44
1.32
100127983--100128023
21
2.0
21
85
9
57
56
0
0
43
0.99
100127979--100128026
20
2.4
20
80
16
55
54
0
0
45
0.99
100133345--100133403
31
1.9
31
96
0
109
23
10
10
55
1.63
100136955--100137018
30
2.2
30
82
2
76
46
1
3
48
1.27
100138380--100138416
2
18.5
2
100
0
74
48
0
51
0
1.00
100143246--100143309
5
12.6
5
79
14
69
57
1
0
40
1.08
100143246--100143309
21
3.1
21
78
13
71
57
1
0
40
1.08
100143257--100143316
29
2.1
29
87
0
84
60
1
0
38
1.07
100143913--100143969
29
2.0
29
100
0
114
59
10
14
15
1.60
100143917--100143964
15
3.3
15
73
26
57
60
10
14
14
1.59
100143920--100143967
14
3.4
14
74
25
55
62
8
12
16
1.53
100146302--100146578
3
91.7
3
67
18
89
62
2
5
29
1.32
100146369--100146576
23
8.6
23
68
15
91
62
2
4
29
1.30
100146494--100146559
34
1.9
35
84
9
91
57
3
7
31
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100146527--100146574
19
2.6
18
83
9
60
62
0
4
33
1.14
100146512--100146575
16
3.7
17
80
12
67
59
1
7
31
1.35
100147633--100148030
87
4.6
87
82
5
434
21
22
21
34
1.96
100147970--100148245
42
6.4
42
68
13
186
21
20
22
35
1.96
100147876--100148158
129
2.2
128
87
2
397
21
20
22
34
1.96
100148011--100148250
86
2.8
86
84
3
304
20
21
22
35
1.96
100147794--100148245
215
2.1
216
84
3
579
21
21
21
35
1.96
100149451--100149536
30
2.9
30
96
0
154
16
51
6
25
1.69
100150128--100150186
3
19.0
3
86
10
75
30
0
5
64
1.15
100150287--100150328
16
2.6
17
81
11
52
33
0
7
59
1.25
100158070--100158112
22
2.0
22
86
4
61
11
25
9
53
1.67
100158212--100158243
9
3.7
9
95
4
57
43
12
21
21
1.86
100158607--100158650
22
2.0
22
82
8
54
18
25
2
54
1.55
100162263--100162567
3
100.7
3
70
16
127
62
2
4
30
1.30
100162358--100162400
16
2.6
17
82
10
54
65
0
4
30
1.13
100162503--100162547
16
2.8
17
83
10
58
64
0
4
31
1.13
100162258--100162567
145
2.2
141
84
7
446
62
2
4
30
1.29
100162313--100162574
20
13.1
20
66
21
83
61
2
5
30
1.32
100165054--100165092
15
2.5
15
87
4
51
51
10
0
38
1.36
100170103--100170180
22
4.1
18
70
19
50
60
0
1
38
1.05
100173202--100173262
30
2.1
31
84
9
83
45
11
4
37
1.62
100177824--100177943
60
2.0
60
98
0
231
29
30
10
30
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100186871--100186956
42
2.0
42
90
0
136
24
11
12
51
1.73
100189408--100189518
40
2.8
40
94
1
188
22
19
26
31
1.98
100191443--100191467
10
2.5
10
100
0
50
12
0
8
80
0.92
100195073--100195127
24
2.2
26
84
12
71
40
0
0
60
0.97
100197886--100197915
11
2.7
11
94
0
51
50
10
16
23
1.75
100198220--100198261
18
2.4
17
92
7
75
21
14
11
52
1.73
100203641--100203681
21
2.0
21
90
0
64
19
29
21
29
1.98
100209609--100209644
17
2.1
17
94
0
63
44
2
2
50
1.31
100214705--100214740
18
2.0
18
94
0
63
47
2
0
50
1.15
100228511--100228568
18
3.2
18
72
18
57
34
1
3
60
1.24
100230710--100230750
21
1.9
22
90
5
66
60
2
2
34
1.23
100245896--100245936
12
3.5
11
87
9
55
21
4
9
63
1.44
100245905--100245938
11
3.0
11
95
4
59
17
8
8
64
1.47
100247086--100247189
39
2.6
41
79
8
117
60
9
7
22
1.53
100258969--100259091
56
2.2
56
89
4
187
32
8
13
45
1.74
100268997--100269058
30
2.1
30
87
0
88
38
0
24
37
1.56
100273107--100273139
15
2.2
15
100
0
66
39
0
12
48
1.40
100276004--100276055
25
2.2
23
86
6
68
65
3
0
30
1.10
100279782--100279849
28
2.4
28
83
9
86
39
0
5
54
1.25
100287449--100287581
35
3.6
39
79
13
140
33
22
12
32
1.91
100289841--100290487
130
5.0
130
90
2
980
36
18
18
26
1.94
100289841--100290487
258
2.5
259
90
3
1007
36
18
18
26
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100290755--100290817
31
2.0
31
96
0
117
53
22
7
15
1.67
100291636--100291697
28
2.2
28
82
8
72
53
9
12
24
1.69
100292822--100292848
14
1.9
14
100
0
54
40
0
0
59
0.98
100293143--100293532
133
2.9
133
89
1
577
27
24
19
27
1.99
100293560--100293744
64
2.9
64
95
1
318
36
11
18
33
1.86
100301729--100301769
19
2.1
20
86
13
59
43
12
19
24
1.85
100304478--100304866
130
3.0
130
89
1
575
36
18
17
27
1.93
100305649--100305673
2
12.5
2
100
0
50
52
0
0
48
1.00
100306016--100306077
28
2.2
28
82
8
72
53
9
12
24
1.69
100307173--100307199
14
1.9
14
100
0
54
33
0
0
66
0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316