genome.fa.s1.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  196  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63517078--63517519	47	9.4	47	94	0	731	28	30	9	32	1.88
63519983--63520100	43	2.8	42	73	14	107	23	19	26	30	1.98
63523503--63523686	40	4.5	39	73	13	140	26	17	25	30	1.97
63525426--63525587	42	3.8	42	80	3	182	28	22	16	32	1.96
63534345--63534497	42	3.7	41	82	8	193	31	24	13	30	1.94
63536830--63536924	27	3.5	27	84	2	120	29	8	21	41	1.82
63537224--63537288	28	2.3	29	91	2	105	27	32	15	24	1.95
63537224--63537308	29	3.0	29	85	10	106	27	31	15	25	1.95
63541942--63542168	39	5.8	40	83	7	270	26	23	19	30	1.98
63541942--63542168	78	2.9	78	86	4	298	26	23	19	30	1.98
63547562--63547745	46	4.0	46	78	0	197	27	16	23	31	1.96
63547562--63547738	92	1.9	92	84	0	237	27	16	23	32	1.96
63556340--63556381	21	2.0	21	86	9	59	38	4	0	57	1.20
63557257--63557295	18	2.2	18	86	9	53	38	12	12	35	1.82
63557343--63557372	15	1.9	16	93	6	53	33	6	13	46	1.69
63559228--63559279	14	3.3	15	81	13	61	50	0	0	50	1.00
63560081--63560139	30	2.0	30	96	0	109	28	3	8	59	1.43
63560223--63560262	18	2.2	18	86	8	55	20	0	12	67	1.22
63560264--63560296	11	2.8	12	86	9	50	63	0	0	36	0.95
63560645--63560711	17	3.9	17	70	16	57	32	5	4	56	1.43
63564812--63564875	21	3.0	21	81	0	65	48	20	6	25	1.72
63569724--63569862	59	2.3	60	82	3	156	46	13	14	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63570115--63570158	18	2.4	18	96	3	79	45	0	11	43	1.40
63571829--63571868	20	1.9	22	85	10	57	52	15	12	20	1.74
63573977--63574002	13	2.0	13	100	0	52	23	38	23	15	1.92
63578085--63578262	27	6.6	27	81	3	187	28	28	15	26	1.96
63578106--63578261	82	1.9	81	86	3	224	28	28	16	26	1.96
63585403--63585580	27	6.6	27	83	3	205	26	15	28	29	1.96
63585404--63585559	82	1.9	81	88	3	233	26	15	28	29	1.96
63585400--63585580	82	2.2	81	83	2	229	27	15	27	29	1.96
63604141--63604203	31	2.0	31	90	0	99	30	25	12	31	1.93
63610938--63611133	55	3.6	53	80	6	182	22	23	18	34	1.96
63613591--63613663	33	2.2	33	92	0	119	2	38	15	43	1.61
63620009--63620054	24	1.9	24	100	0	92	52	15	4	28	1.61
63628694--63628879	40	4.7	40	87	5	227	25	22	26	25	2.00
63628747--63628912	80	2.1	79	83	7	203	27	21	27	24	1.99
63636627--63636852	40	5.7	40	87	4	280	25	21	26	26	1.99
63638407--63638507	43	2.4	43	71	5	98	28	23	20	26	1.99
63645567--63645603	14	2.8	13	88	11	58	62	10	5	21	1.48
63654543--63654569	14	1.9	14	100	0	54	59	11	7	22	1.56
63656440--63656657	47	4.7	44	73	13	147	26	27	18	27	1.98
63667308--63667484	47	3.7	47	76	9	160	27	19	28	24	1.99
63671479--63671654	46	3.8	45	78	10	194	21	21	28	27	1.99
63671476--63671646	93	1.8	93	92	0	288	21	22	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63675454--63675663	40	5.3	39	84	4	253	25	27	23	23	2.00
63678548--63678669	46	2.7	46	96	0	217	27	27	16	28	1.97
63680351--63680410	6	10.2	6	82	8	61	76	3	5	15	1.08
63680339--63680406	18	3.9	18	77	12	61	75	4	5	14	1.16
63686908--63687039	52	2.6	50	84	2	156	26	15	25	31	1.96
63686908--63687127	51	4.3	50	76	6	174	27	16	24	31	1.97
63687072--63687190	51	2.3	51	78	5	125	29	15	26	27	1.96
63691927--63691969	22	2.0	22	90	9	70	20	13	27	37	1.91
63696075--63696258	46	4.0	46	74	10	151	26	20	29	23	1.99
63703750--63703794	11	4.3	10	78	10	54	31	2	2	64	1.18
63703783--63703825	18	2.3	18	88	4	59	46	0	2	51	1.13
63703816--63703872	18	3.1	19	85	10	73	35	0	8	56	1.31
63703821--63703878	19	3.0	19	82	2	71	32	0	10	56	1.33
63705074--63705109	6	5.8	6	93	6	63	16	0	0	83	0.65
63706106--63706163	28	2.1	28	100	0	116	24	24	12	39	1.89
63709351--63709406	20	2.8	19	81	7	76	39	8	1	50	1.44
63709962--63709993	17	1.9	16	93	6	55	56	0	0	43	0.99
63711299--63711347	18	2.7	18	75	12	55	42	0	0	57	0.99
63711287--63711340	19	2.9	19	77	2	56	42	0	0	57	0.98
63712116--63712182	28	2.4	28	89	0	98	58	1	8	31	1.38
63712172--63712206	15	2.2	16	90	5	54	77	8	0	14	0.99
63712171--63712207	16	2.3	17	81	13	51	78	8	0	13	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63713202--63713288	45	2.0	44	90	2	138	50	16	4	28	1.64
63716232--63716277	23	2.0	22	83	4	56	54	4	0	41	1.20
63719158--63719215	26	2.2	26	93	0	98	34	5	24	36	1.78
63724064--63724323	131	2.0	131	87	3	382	35	18	18	28	1.94
63726797--63726892	17	5.4	18	71	13	56	58	6	3	32	1.39
63726785--63726851	34	2.0	33	85	5	89	62	5	0	31	1.19
63727912--63727968	28	2.0	28	100	0	114	40	24	0	35	1.56
63732502--63732576	33	2.3	33	85	0	96	40	20	14	25	1.90
63733586--63733626	21	2.0	21	100	0	82	39	9	24	26	1.86
63734066--63734107	17	2.5	16	82	17	50	19	2	0	78	0.86
63734079--63734117	20	2.0	20	89	0	60	20	5	0	74	1.01
63734608--63734649	13	3.3	13	73	6	50	19	19	2	59	1.49
63738658--63738730	26	2.8	25	79	4	83	39	9	16	34	1.81
63739986--63740041	27	2.1	27	100	0	112	26	10	25	37	1.88
63742936--63743013	31	2.5	31	79	4	77	51	11	6	30	1.63
63749507--63749567	2	30.5	2	100	0	122	50	0	49	0	1.00
63750892--63750925	18	1.9	18	88	5	52	29	0	5	64	1.17
63753752--63753923	46	3.7	46	77	11	190	27	19	28	24	1.98
63753858--63754067	94	2.2	95	81	6	259	28	19	28	23	1.98
63753851--63754065	47	4.6	47	84	5	233	29	18	28	24	1.98
63760831--63760869	20	1.9	20	84	5	51	53	0	2	43	1.14
63762090--63762137	11	4.4	11	94	0	87	70	0	29	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63762090--63762137	4	13.0	4	81	16	59	70	0	29	0	0.87
63762085--63762137	15	3.6	15	80	16	58	69	0	28	1	0.99
63762171--63762204	11	3.0	11	86	4	50	70	0	26	2	1.01
63764901--63764943	22	2.0	21	82	8	52	53	2	18	25	1.56
63765442--63765593	27	5.6	27	88	2	205	27	14	27	30	1.95
63765442--63765593	55	2.8	55	87	2	225	27	14	27	30	1.95
63765442--63765593	82	1.9	82	88	0	232	27	14	27	30	1.95
63769482--63769520	20	1.9	20	84	5	51	61	2	2	33	1.23
63771442--63771536	47	2.0	47	100	0	190	65	0	8	26	1.21
63783668--63783707	16	2.5	16	95	0	71	12	2	32	52	1.52
63783746--63783809	26	2.5	26	94	0	119	42	0	15	42	1.47
63783937--63784195	126	2.1	126	85	1	340	35	15	17	30	1.92
63785257--63785314	19	3.2	19	68	22	61	36	1	10	51	1.46
63785260--63785326	35	1.9	35	93	0	116	34	1	13	50	1.51
63790226--63790323	27	3.6	27	70	22	87	57	5	4	33	1.40
63790209--63790341	56	2.4	56	97	0	248	51	7	3	37	1.45
63790248--63790334	27	3.2	26	67	23	70	52	6	2	37	1.41
63790737--63790771	18	1.9	18	94	0	61	40	2	28	28	1.71
63791389--63791435	7	6.7	7	95	0	85	57	12	0	29	1.36
63792374--63792484	47	2.3	50	84	9	156	58	2	5	33	1.35
63792638--63792717	10	7.6	10	74	20	74	38	0	28	32	1.57
63792629--63792714	32	2.7	32	92	0	136	40	0	26	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63803628--63803778	65	2.3	65	86	0	212	21	21	21	35	1.96
63803821--63803907	26	3.3	26	88	0	120	19	20	19	40	1.92
63805347--63805387	13	2.7	16	75	25	52	17	26	39	17	1.91
63817196--63817344	40	3.7	40	94	0	262	24	25	22	26	2.00
63825240--63825388	40	3.7	40	97	0	280	25	27	21	25	1.99
63828559--63828659	27	3.7	28	88	2	143	32	19	25	21	1.97
63836334--63836447	27	4.2	27	75	11	92	37	19	21	21	1.94
63863414--63863602	38	4.9	38	85	6	220	29	26	22	21	1.99
63863414--63863616	76	2.6	78	83	6	243	30	27	21	21	1.98
63867907--63868022	27	4.3	27	87	2	162	34	19	21	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316