Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  139  of  316  ( 37835 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44438051--44438222
44
4.3
39
74
19
124
36
3
2
57
1.31
44438077--44438135
14
3.8
15
75
18
50
32
5
1
61
1.28
44438077--44438152
17
4.5
16
77
12
64
34
3
1
60
1.23
44438046--44438141
39
2.5
38
75
9
97
37
3
3
56
1.31
44438113--44438230
23
5.5
22
79
11
111
34
2
2
60
1.24
44438115--44438171
9
5.8
9
77
18
51
33
0
1
64
1.04
44438078--44438152
34
2.2
34
83
9
91
34
4
1
60
1.24
44438116--44438240
44
2.8
45
83
9
150
35
2
3
59
1.27
44442807--44444024
407
3.0
405
86
3
1623
38
12
17
31
1.86
44447189--44447229
18
2.2
18
86
4
55
73
0
2
24
0.96
44449397--44449596
68
2.9
69
78
5
165
33
18
26
22
1.96
44451985--44452074
45
2.0
45
100
0
180
22
6
11
60
1.54
44452869--44452921
24
2.2
24
96
0
97
32
0
15
52
1.42
44453833--44453878
22
2.1
22
95
0
83
30
4
28
36
1.76
44454151--44454190
20
2.0
20
90
0
62
30
2
10
57
1.45
44454899--44454988
46
2.0
45
84
6
119
34
6
12
46
1.67
44458336--44458389
24
2.2
24
96
0
99
70
3
22
3
1.19
44458320--44458405
26
3.3
26
72
20
72
72
2
23
2
1.08
44461807--44461984
48
3.7
48
89
0
257
25
18
28
28
1.98
44467741--44467831
46
2.0
45
91
6
148
32
10
13
42
1.79
44472106--44472136
16
1.9
16
100
0
62
38
6
6
48
1.55
44472315--44472371
22
2.6
22
80
5
53
35
3
5
56
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44472587--44472661
22
3.3
21
77
18
64
33
4
5
57
1.40
44472612--44472757
24
5.8
24
65
23
70
34
8
4
52
1.52
44472614--44472665
21
2.5
21
81
15
63
34
3
1
59
1.27
44477355--44477527
46
3.8
45
76
10
188
22
21
27
28
1.99
44477351--44477522
93
1.8
93
92
0
290
22
21
29
27
1.99
44479985--44480383
176
2.4
162
85
11
572
29
17
19
34
1.94
44480041--44480398
88
4.1
88
95
1
616
27
17
17
37
1.92
44480041--44480653
176
3.4
176
80
14
663
28
16
16
37
1.91
44480375--44480409
14
2.5
14
90
0
52
20
17
2
60
1.49
44480296--44480604
100
3.1
98
81
12
364
27
16
15
41
1.88
44481063--44481373
153
2.0
153
98
0
595
42
36
2
18
1.64
44482911--44482957
23
2.0
24
83
4
60
70
4
2
23
1.16
44483148--44483251
3
34.7
3
66
24
51
61
1
7
28
1.34
44483196--44483251
12
4.7
12
95
0
94
64
0
5
30
1.16
44483208--44483262
24
2.3
24
83
0
65
63
1
5
29
1.27
44483260--44483303
23
2.0
22
90
4
70
59
4
2
34
1.30
44483235--44483303
19
3.4
21
72
18
65
62
4
2
30
1.29
44483437--44483487
9
5.6
9
79
11
59
56
0
3
39
1.18
44483437--44483481
18
2.5
18
89
7
65
55
0
4
40
1.20
44485531--44485561
16
1.9
16
100
0
62
38
6
6
48
1.55
44485740--44485796
22
2.6
22
80
5
53
35
3
5
56
1.39
44486012--44486086
22
3.3
21
77
18
64
33
4
5
57
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44486037--44486150
26
4.7
24
69
23
69
33
9
3
53
1.51
44486039--44486090
21
2.5
21
81
15
63
34
3
1
59
1.27
44486229--44486304
31
2.5
29
76
17
75
31
5
2
60
1.33
44486405--44486433
11
2.7
11
94
5
51
37
0
6
55
1.27
44494709--44494755
21
2.2
22
85
11
62
42
8
0
48
1.33
44497153--44497217
32
2.0
32
96
0
121
36
21
12
29
1.90
44498059--44498099
18
2.3
18
100
0
82
51
17
7
24
1.70
44501309--44501355
22
2.2
20
85
14
60
53
0
2
44
1.12
44508837--44508880
22
2.0
22
86
8
63
54
4
2
38
1.33
44508863--44508916
27
2.0
27
82
7
65
46
3
5
44
1.44
44510252--44510279
14
2.0
14
100
0
56
14
7
57
21
1.61
44513050--44513101
19
2.6
21
78
12
63
23
9
3
63
1.41
44523616--44523653
19
2.0
19
85
10
51
68
0
10
21
1.19
44523704--44523850
72
2.0
72
98
0
285
33
17
17
31
1.94
44524937--44524964
13
2.2
13
100
0
56
17
35
32
14
1.90
44525438--44525469
16
2.0
16
100
0
64
37
31
6
25
1.81
44539843--44539904
27
2.3
27
97
0
115
37
4
16
41
1.69
44541353--44541530
27
6.6
27
84
3
205
29
28
15
26
1.96
44541374--44541529
82
1.9
81
88
3
233
29
28
15
26
1.96
44549245--44549420
27
6.5
27
83
3
192
29
27
14
27
1.95
44549264--44549419
82
1.9
81
86
3
224
28
28
15
27
1.96
44551198--44551224
11
2.5
11
100
0
54
22
7
18
51
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44552625--44552819
93
2.1
92
88
4
286
44
4
4
47
1.41
44552852--44552885
17
2.0
17
94
0
59
44
5
0
50
1.26
44552852--44552890
17
2.4
16
87
8
53
43
5
0
51
1.24
44552856--44552895
17
2.3
18
83
12
57
47
5
0
47
1.24
44552975--44553109
15
8.9
15
67
24
70
42
2
3
51
1.32
44552851--44553069
120
1.8
119
89
6
345
40
3
5
50
1.44
44553077--44553118
15
2.7
16
82
14
52
45
0
2
52
1.13
44553068--44553365
154
1.9
156
95
2
546
47
5
3
44
1.41
44553218--44553252
18
2.0
17
88
5
52
45
0
0
54
0.99
44553485--44553523
16
2.4
16
86
0
51
28
33
2
35
1.71
44553498--44553554
16
3.6
16
95
0
87
33
36
0
29
1.58
44555246--44555272
11
2.5
11
100
0
54
29
0
7
62
1.22
44555247--44555289
21
2.0
21
86
0
59
37
0
4
58
1.19
44555275--44555335
27
2.3
27
82
2
79
37
0
4
57
1.20
44555574--44555607
13
2.8
12
91
8
59
29
0
0
70
0.87
44556112--44556145
3
11.7
3
93
6
61
67
32
0
0
0.91
44565676--44565777
42
2.4
42
91
0
177
22
23
24
29
1.99
44567470--44567528
28
2.1
28
83
0
73
25
27
15
32
1.95
44568990--44569027
18
2.1
18
100
0
76
39
0
26
34
1.57
44572598--44572736
68
2.1
67
78
10
151
41
5
3
50
1.42
44572595--44572683
37
2.3
38
81
11
101
40
4
3
51
1.39
44573223--44573270
22
2.2
23
85
7
64
70
4
0
25
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44573301--44573336
15
2.4
15
100
0
72
50
5
22
22
1.70
44574248--44574307
29
2.1
29
87
0
84
50
10
11
28
1.71
44574333--44574379
24
2.0
24
87
8
69
25
6
2
65
1.27
44591825--44591891
25
2.7
25
81
9
82
26
20
22
29
1.99
44592505--44592627
45
2.7
45
80
0
138
37
17
20
24
1.94
44593577--44593602
13
2.0
13
100
0
52
7
7
46
38
1.61
44598954--44598985
14
2.3
14
100
0
64
31
6
0
62
1.20
44603556--44603590
3
11.7
3
100
0
70
65
0
34
0
0.93
44608870--44609005
66
2.1
66
83
5
168
21
10
26
41
1.85
44631279--44631307
15
1.9
15
100
0
58
55
6
3
34
1.44
44631623--44631688
20
3.3
20
65
23
57
51
9
13
25
1.70
44631623--44631703
40
2.0
40
100
0
162
50
7
12
29
1.67
44635621--44636029
48
8.7
49
75
15
280
24
30
18
26
1.98
44635621--44636029
93
4.3
96
75
12
343
24
30
18
26
1.98
44639553--44639601
21
2.3
21
85
0
71
26
20
22
30
1.98
44642586--44642661
35
2.2
35
82
0
98
26
23
27
22
1.99
44648454--44648494
21
2.0
21
95
0
73
53
9
2
34
1.47
44652795--44652908
57
2.0
56
80
8
124
35
22
15
26
1.94
44656667--44656710
17
2.6
17
92
0
70
31
38
11
18
1.86
44658939--44659024
42
2.0
43
90
4
138
23
23
2
51
1.60
44663489--44663608
56
2.1
56
98
0
231
45
9
23
22
1.81
44664736--44664918
79
2.3
81
83
7
223
23
22
28
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44664737--44664920
40
4.6
40
82
9
207
23
22
28
25
1.99
44664789--44664953
79
2.1
79
83
6
201
24
21
28
25
1.99
44670346--44670372
13
2.1
13
100
0
54
22
22
7
48
1.75
44672016--44672059
14
3.1
14
80
0
61
59
6
2
31
1.36
44671972--44672059
32
2.9
30
90
6
135
52
9
4
34
1.54
44675061--44675106
24
1.9
24
90
0
74
17
15
17
50
1.79
44675063--44675113
24
2.2
24
82
3
59
21
19
15
43
1.88
44675286--44675350
8
8.5
8
88
8
82
24
0
4
70
1.06
44675286--44675350
15
4.3
15
90
2
94
24
0
4
70
1.06
44675286--44675352
23
2.9
24
86
6
93
23
0
4
71
1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316