genome.fa.s1.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  111  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34946482--34946533	24	2.2	24	92	0	86	51	7	3	36	1.49
34953481--34953515	17	2.0	18	88	5	54	14	40	28	17	1.88
34966760--34966822	29	2.2	29	88	5	92	23	15	31	28	1.96
34970592--34970658	29	2.3	29	92	7	111	25	11	31	31	1.92
34971954--34971986	18	1.9	17	88	11	50	45	12	15	27	1.81
34972307--34972704	198	2.0	199	95	0	717	34	22	13	28	1.93
34978278--34978345	29	2.3	29	82	5	84	27	29	13	29	1.94
34978167--34978669	175	2.9	174	96	0	934	31	24	14	30	1.94
34978627--34978699	29	2.5	30	81	18	93	30	27	15	27	1.96
34986592--34986659	29	2.3	29	80	5	75	29	29	11	29	1.92
34986767--34986834	29	2.3	29	82	5	84	27	29	13	29	1.94
34986936--34987014	29	2.7	30	82	13	110	29	30	15	25	1.96
34986481--34986983	175	2.9	174	98	0	961	31	24	14	30	1.94
34988942--34989114	93	1.9	93	90	2	276	30	27	19	22	1.98
34988935--34989112	46	3.8	46	76	14	177	31	26	19	22	1.98
35008535--35008841	40	7.7	40	90	1	449	24	23	27	24	2.00
35012416--35012454	18	2.2	18	90	0	60	35	15	28	20	1.93
35013375--35013525	27	5.7	26	74	8	106	37	23	11	27	1.89
35013375--35013569	27	7.3	26	77	8	88	37	22	11	28	1.89
35013367--35013525	54	3.0	54	77	6	144	37	23	11	28	1.89
35013375--35013540	81	2.1	80	80	5	183	37	22	11	28	1.89
35013427--35013569	54	2.6	54	79	6	148	37	21	11	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35013548--35013836	81	3.6	80	88	2	400	31	19	6	41	1.78
35013548--35013836	27	10.7	27	87	0	355	31	19	6	41	1.78
35013818--35014052	27	8.7	27	80	5	167	38	20	9	31	1.84
35013818--35014052	54	4.4	53	83	5	215	38	20	9	31	1.84
35013521--35013868	81	4.3	81	83	3	387	32	20	7	39	1.80
35013831--35014025	81	2.4	81	86	1	248	39	20	9	30	1.84
35014055--35014271	27	8.0	27	84	0	245	35	19	21	23	1.96
35014905--35014978	27	2.8	27	89	2	105	17	24	21	36	1.95
35015126--35015182	19	3.4	19	64	31	56	19	17	15	47	1.83
35015116--35015182	31	2.1	32	97	2	127	17	16	14	50	1.78
35015128--35015218	31	3.0	31	87	4	114	20	16	12	50	1.77
35019748--35019835	44	2.0	44	95	0	158	34	18	22	25	1.96
35021150--35021513	144	2.5	143	83	4	421	26	19	29	24	1.98
35021135--35021469	96	3.5	95	83	1	393	25	19	30	25	1.98
35021136--35021513	48	7.9	48	80	3	330	26	19	29	24	1.98
35025495--35025586	42	2.2	42	98	0	175	33	21	14	30	1.93
35025679--35025705	14	1.9	14	100	0	54	29	29	22	18	1.97
35025746--35025814	25	2.8	25	88	0	102	26	23	26	24	2.00
35029204--35029604	47	8.5	47	91	4	569	32	8	28	29	1.88
35029767--35029845	37	2.1	37	90	0	122	24	18	31	25	1.98
35031693--35031839	43	3.4	43	98	0	285	22	14	36	27	1.93
35031821--35031894	29	2.6	29	89	4	105	25	16	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35032286--35032362	40	1.9	40	91	0	127	24	23	29	22	1.99
35035872--35036418	47	11.5	47	94	1	860	31	9	29	29	1.88
35036546--35036623	37	2.1	36	88	2	111	24	19	30	25	1.98
35038052--35038237	27	6.7	27	76	9	142	30	6	17	44	1.75
35038052--35038189	29	4.9	29	79	7	151	32	7	15	44	1.75
35038052--35038190	56	2.5	56	95	0	242	32	7	15	44	1.75
35038167--35038317	27	5.6	27	84	3	178	28	7	21	41	1.81
35038168--35038317	81	1.9	81	87	5	223	28	8	21	42	1.81
35038195--35038344	27	5.6	27	82	6	126	29	10	20	40	1.84
35038168--35038350	54	3.4	53	77	4	170	29	9	20	40	1.83
35038349--35038532	27	6.8	27	90	0	278	41	10	21	26	1.85
35046264--35046382	55	2.2	55	83	3	141	13	26	31	28	1.94
35057834--35057912	21	3.9	21	71	14	67	63	7	2	26	1.34
35057851--35057985	41	3.4	38	72	20	116	60	5	2	31	1.33
35057830--35057985	9	15.7	10	64	14	63	60	5	1	31	1.31
35058659--35058714	9	6.0	9	78	19	62	33	0	3	62	1.12
35058660--35058714	19	3.0	17	80	17	65	34	0	3	61	1.13
35058659--35058743	10	8.7	10	77	10	70	38	0	3	57	1.16
35058660--35058730	29	2.4	29	80	11	74	38	0	2	59	1.12
35059380--35059437	31	1.9	30	82	10	73	27	17	12	43	1.84
35061813--35061853	11	3.9	11	76	23	52	56	7	0	36	1.27
35061821--35061868	20	2.5	20	93	3	80	54	8	0	37	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35061821--35061880	19	3.1	19	88	7	77	51	6	1	40	1.38
35061994--35062023	15	2.0	15	100	0	60	40	6	6	46	1.56
35063840--35063923	24	3.3	27	80	11	104	14	23	22	39	1.91
35063983--35064026	23	1.9	23	85	0	61	13	31	22	31	1.93
35064089--35064151	24	2.7	24	85	2	83	17	22	22	38	1.93
35065577--35065711	23	5.7	23	73	10	96	32	17	22	27	1.96
35072128--35072199	37	1.9	37	94	0	126	31	13	15	38	1.87
35077015--35077075	30	2.0	30	83	0	77	31	22	8	37	1.84
35082961--35083112	27	5.6	27	92	3	232	27	13	28	30	1.94
35082961--35083112	55	2.8	55	92	0	241	27	13	28	30	1.94
35090935--35091108	55	3.2	54	84	6	208	26	12	29	31	1.93
35090960--35091108	27	5.5	27	92	4	228	27	12	28	30	1.93
35093348--35093426	33	2.4	32	81	10	88	22	25	37	13	1.91
35095876--35095925	25	2.0	25	88	7	75	28	18	32	22	1.97
35120443--35120619	55	3.3	55	91	2	261	29	28	13	28	1.94
35120443--35120619	27	6.6	27	91	3	259	29	28	13	28	1.94
35126863--35127019	29	5.5	29	88	3	212	33	26	11	29	1.91
35126863--35127019	57	2.7	58	88	3	212	33	26	11	29	1.91
35129870--35130024	42	3.7	42	81	5	168	31	24	15	28	1.95
35134677--35134712	17	2.1	18	89	5	56	16	30	41	11	1.83
35137627--35137889	46	5.6	46	78	12	216	28	18	31	22	1.97
35137626--35137893	47	5.7	47	78	14	243	27	18	31	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35144683--35144937	140	1.8	139	84	5	352	28	18	29	23	1.98
35144674--35144941	47	5.7	47	73	11	196	28	19	29	23	1.98
35152117--35152260	77	1.9	75	82	7	182	34	25	18	22	1.96
35153788--35153888	50	2.0	50	94	0	175	33	26	13	25	1.94
35153847--35153967	37	3.3	37	83	4	154	35	26	16	21	1.94
35173644--35173685	21	2.0	21	81	9	50	19	38	16	26	1.92
35177014--35177336	47	6.5	47	82	11	328	29	28	8	34	1.86
35177065--35177324	97	2.6	100	83	12	336	30	26	7	35	1.85
35177123--35177336	49	4.4	49	87	7	305	30	26	7	35	1.84
35178198--35178247	25	2.0	25	81	11	59	28	34	8	30	1.86
35178411--35178771	40	9.1	40	88	1	510	25	28	22	24	1.99
35180995--35181512	49	10.6	47	89	6	712	28	29	8	33	1.86
35180995--35181512	145	3.5	144	91	4	797	28	29	8	33	1.86
35195968--35196137	46	3.7	45	77	17	179	25	20	31	22	1.98
35195967--35196225	140	1.8	140	85	5	362	26	18	31	24	1.97
35195958--35196225	94	2.9	93	76	13	266	25	17	31	25	1.97
35206943--35207172	40	5.8	40	92	1	336	25	21	28	24	1.99
35215500--35215689	40	4.8	40	90	1	247	25	22	28	24	1.99
35215500--35215709	80	2.6	80	86	3	280	24	21	28	25	1.99
35230804--35231049	40	6.2	40	94	1	406	28	26	21	23	1.99
35233131--35233281	53	2.8	53	87	4	205	29	27	16	26	1.97
35238644--35239021	47	8.1	47	89	1	508	34	10	28	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35238891--35238966	25	3.2	25	64	17	61	36	10	26	26	1.89
35238903--35238978	22	3.3	22	66	28	59	34	11	28	25	1.91
35238644--35239016	140	2.7	139	86	2	417	34	10	28	26	1.90
35238644--35239067	140	3.0	139	83	4	390	34	10	28	26	1.89
35239001--35239160	46	3.5	46	95	0	275	35	11	30	22	1.89
35244407--35244571	40	4.2	40	88	0	242	26	27	22	24	2.00
35246008--35246050	14	3.1	14	80	6	52	58	9	2	30	1.42
35246008--35246046	13	2.9	13	84	3	51	58	10	2	28	1.44
35258982--35259048	33	2.0	33	94	0	116	19	7	32	40	1.79
35265476--35265500	12	2.1	12	100	0	50	16	8	20	56	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316