genome.fa.s1.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  119  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37708910--37709039	49	2.7	49	76	0	125	30	21	26	22	1.99
37709528--37709618	45	2.0	45	100	0	182	42	10	8	37	1.71
37709587--37709619	13	2.6	13	90	4	50	48	12	0	39	1.40
37712519--37712552	12	2.7	13	86	9	52	82	2	0	14	0.79
37720691--37720776	43	2.0	43	95	0	154	19	17	31	31	1.95
37726052--37726147	28	3.4	28	79	0	102	29	28	12	30	1.93
37726136--37726267	40	3.3	40	79	1	129	33	24	18	24	1.97
37732756--37732807	20	2.6	20	93	0	86	17	36	32	13	1.89
37739753--37740759	495	2.0	492	92	1	1687	34	14	18	32	1.90
37741288--37741484	47	4.4	47	74	15	191	30	13	23	32	1.93
37741327--37741525	84	2.4	85	93	1	339	31	13	23	31	1.93
37742982--37743049	34	2.0	34	94	0	118	23	16	19	41	1.90
37744810--37744850	15	2.7	15	88	0	64	17	17	14	51	1.77
37746639--37746730	42	2.2	42	90	0	139	40	18	10	30	1.85
37746875--37746994	25	4.8	25	89	1	170	24	20	26	28	1.99
37747810--37747882	27	2.7	27	89	4	103	24	27	19	28	1.98
37747831--37747886	27	2.1	27	100	0	112	17	30	21	30	1.96
37747924--37748255	27	12.3	27	75	8	203	30	9	21	39	1.84
37748030--37748240	79	2.6	79	82	4	235	29	8	21	40	1.83
37747926--37748308	54	7.1	54	74	8	199	31	8	20	38	1.84
37748233--37748389	27	5.9	27	90	0	199	40	8	22	28	1.84
37748234--37748389	81	1.9	80	89	3	242	39	8	22	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37748223--37748400	81	2.2	80	82	3	232	37	8	22	31	1.84
37748206--37748389	54	3.4	54	86	3	228	38	8	22	30	1.84
37751153--37751291	48	2.9	48	88	1	199	30	13	23	32	1.93
37753902--37753939	18	2.1	18	100	0	76	63	5	10	21	1.46
37756536--37756578	20	2.2	20	83	8	52	46	2	16	34	1.60
37756638--37756681	20	2.3	19	80	7	52	45	2	13	38	1.56
37764422--37764513	28	3.3	28	92	0	139	39	22	21	16	1.92
37765719--37765767	20	2.6	18	75	15	53	65	0	28	6	1.16
37766886--37767350	27	17.2	27	89	0	689	29	22	8	40	1.83
37767221--37767536	27	11.7	27	85	2	143	35	20	9	35	1.85
37767329--37767536	54	3.9	54	81	0	218	37	19	10	32	1.85
37767343--37767511	81	2.1	81	85	2	223	39	18	10	31	1.84
37767343--37767544	81	2.5	80	82	5	194	39	17	10	32	1.84
37767474--37767546	27	2.7	26	83	6	92	39	13	10	35	1.80
37767540--37767752	27	8.0	27	88	1	286	35	19	20	24	1.96
37767958--37768027	25	2.8	25	84	4	88	28	24	18	28	1.98
37769629--37770137	27	18.8	27	90	0	748	29	22	8	40	1.82
37770125--37770300	27	6.9	27	76	12	138	41	21	6	30	1.79
37769899--37770341	54	8.4	53	81	7	159	35	21	7	36	1.81
37770224--37770355	27	4.9	27	82	3	124	38	19	9	32	1.83
37770345--37770747	27	15.0	27	87	1	567	35	17	20	25	1.95
37770953--37771047	25	3.8	25	92	0	154	26	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37770953--37771083	25	5.2	24	82	8	120	29	23	21	25	1.99
37773388--37773432	20	2.2	20	84	0	54	46	2	13	37	1.55
37776339--37776506	92	1.8	92	88	2	257	22	19	27	29	1.98
37776737--37776774	19	2.0	20	85	15	53	36	0	23	39	1.55
37783980--37784220	81	3.0	82	80	3	299	40	19	17	22	1.91
37783972--37784222	27	9.3	27	82	5	240	40	19	17	22	1.91
37788926--37789018	48	1.9	48	84	0	123	35	20	13	30	1.92
37793059--37793097	20	2.0	20	89	0	60	17	12	28	41	1.87
37795227--37795326	47	2.1	47	98	0	191	35	9	20	36	1.84
37797151--37797189	16	2.4	16	82	0	51	48	2	0	48	1.15
37800220--37800265	18	2.5	18	85	3	56	26	0	2	71	0.97
37800220--37800265	19	2.5	19	86	10	60	26	0	2	71	0.97
37802094--37802270	27	6.6	27	83	5	196	29	27	15	27	1.96
37802115--37802269	81	1.9	81	86	5	224	29	27	15	27	1.96
37810274--37810451	27	6.6	27	84	3	205	29	28	15	26	1.96
37810295--37810450	82	1.9	81	88	3	233	29	28	15	26	1.96
37817246--37817416	93	1.8	93	93	0	297	28	28	21	22	1.99
37817241--37817413	46	3.7	46	76	13	192	29	27	20	22	1.99
37817837--37817895	30	2.0	30	86	0	82	25	27	8	38	1.84
37819400--37819454	17	3.2	17	75	14	58	58	12	5	23	1.55
37821764--37821843	30	2.6	31	84	9	103	58	23	0	17	1.38
37821768--37821824	16	3.6	16	72	11	55	59	24	0	15	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37823812--37823881	27	2.6	27	95	2	113	31	28	12	27	1.93
37823812--37823909	28	3.5	28	90	2	135	31	28	13	26	1.94
37831897--37831966	27	2.6	27	95	2	113	31	28	12	27	1.93
37831897--37831994	28	3.5	28	90	2	135	31	28	13	26	1.94
37836571--37836606	18	1.9	19	88	5	56	63	8	11	16	1.49
37838240--37838290	25	2.0	25	100	0	102	39	7	11	41	1.71
37844932--37844956	13	1.9	13	100	0	50	36	40	24	0	1.55
37845862--37845982	44	2.8	44	89	0	188	29	33	17	19	1.95
37845958--37846123	48	3.5	48	84	4	187	23	27	20	28	1.99
37848452--37848503	27	2.0	26	84	3	68	34	21	26	17	1.95
37849104--37849157	27	2.0	27	85	3	74	35	20	22	22	1.96
37849158--37849357	27	7.4	27	86	2	249	26	20	18	35	1.95
37849158--37849357	81	2.5	81	85	1	276	26	20	18	35	1.95
37852107--37852182	24	3.2	24	92	0	134	31	21	13	34	1.91
37855347--37855464	60	2.0	59	89	1	182	24	24	29	21	1.99
37856250--37856426	46	3.7	49	78	11	179	24	28	20	27	1.99
37859404--37859463	18	3.4	18	73	17	72	51	0	1	46	1.10
37859406--37859474	34	2.0	34	100	0	138	53	0	2	43	1.15
37866999--37867037	21	1.9	21	85	15	55	51	15	2	30	1.57
37869905--37870115	46	4.5	48	79	4	198	24	27	20	27	1.99
37869907--37870070	48	3.5	46	79	7	159	25	26	20	27	1.99
37869905--37870115	94	2.2	93	81	5	237	24	27	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37872994--37873067	25	2.8	26	76	19	73	58	5	1	35	1.30
37877291--37877345	27	2.2	26	84	12	71	29	23	1	45	1.63
37877802--37877837	18	2.1	18	89	5	56	33	25	0	41	1.55
37879028--37879064	16	2.4	15	82	8	56	64	0	0	35	0.94
37879568--37879637	21	3.2	21	64	18	52	24	11	24	40	1.88
37879563--37879650	45	2.0	45	95	0	158	26	11	25	37	1.89
37883779--37883842	31	2.1	31	93	0	110	32	26	10	29	1.90
37888083--37888107	12	2.1	12	100	0	50	16	8	16	60	1.58
37888422--37888455	17	2.0	17	100	0	68	35	5	41	17	1.74
37888798--37889063	47	5.7	45	76	9	214	27	21	29	21	1.98
37888796--37889063	94	2.9	93	80	8	314	27	20	29	22	1.98
37893321--37893487	43	3.9	42	82	4	201	31	24	15	28	1.96
37913176--37913310	40	3.4	40	81	0	117	33	17	5	43	1.71
37913237--37913328	40	2.3	40	80	0	103	33	19	4	42	1.71
37913252--37913338	40	2.2	40	78	0	93	34	18	3	43	1.67
37914586--37914642	17	3.4	16	76	7	51	47	1	0	50	1.11
37916614--37916721	46	2.3	46	80	3	128	25	19	25	29	1.98
37916635--37916738	46	2.3	46	81	6	122	31	19	22	26	1.97
37926619--37926656	19	2.0	20	85	15	53	36	0	23	39	1.55
37936340--37936505	39	4.3	39	88	0	233	22	24	19	33	1.97
37942615--37942666	27	2.0	26	84	3	68	17	26	21	34	1.95
37948750--37948843	39	2.4	38	91	3	152	24	24	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37953684--37953708	13	1.9	13	100	0	50	20	0	24	56	1.43
37963820--37963873	23	2.3	23	87	0	72	22	22	18	37	1.95
37970175--37970230	23	2.4	23	90	0	85	19	14	21	44	1.86
37973806--37973914	56	1.9	56	85	3	148	25	15	26	32	1.96
37975608--37975779	46	3.7	46	79	10	215	29	28	20	21	1.98
37975613--37975783	93	1.8	93	96	0	315	28	29	21	21	1.98
37985756--37985931	27	6.5	27	83	3	192	30	27	14	27	1.95
37985775--37985930	82	1.9	81	86	3	224	29	27	15	27	1.96
37986411--37986436	12	2.2	12	100	0	52	42	0	7	50	1.31
37988615--37988785	93	1.8	93	97	0	324	28	28	21	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316