genome.fa.s1.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  141  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45005384--45005423	20	2.0	20	85	0	53	37	22	0	40	1.54
45005609--45005863	55	4.8	53	81	7	218	21	25	16	36	1.94
45005656--45005856	108	1.8	110	87	4	300	22	25	16	34	1.95
45010152--45010559	47	8.6	47	92	1	620	29	29	8	33	1.86
45010152--45010559	96	4.3	96	91	4	641	29	29	8	33	1.86
45017517--45017771	55	4.8	53	81	7	236	21	25	16	36	1.94
45017564--45017764	108	1.8	110	88	4	309	22	25	16	35	1.95
45019422--45019550	42	3.1	42	82	1	134	29	27	14	28	1.95
45024668--45024699	14	2.3	14	94	0	55	53	0	0	46	1.00
45026037--45026083	19	2.5	19	96	0	85	38	10	23	27	1.88
45032298--45032374	25	3.1	25	92	0	127	42	18	18	20	1.89
45034201--45034232	14	2.3	14	100	0	64	6	15	46	31	1.71
45038038--45038303	40	6.7	40	94	1	455	30	20	26	22	1.98
45038038--45038303	118	2.2	120	93	1	455	30	20	26	22	1.98
45046783--45047050	40	6.7	40	95	0	464	30	20	26	22	1.98
45050418--45050551	40	3.3	40	83	7	130	26	17	26	29	1.97
45050436--45050554	41	2.9	41	83	7	145	28	16	26	27	1.97
45057642--45057846	79	2.5	79	84	3	257	31	28	12	27	1.93
45057672--45057868	107	1.8	107	90	2	315	30	27	13	27	1.94
45057641--45057868	56	4.2	56	86	8	292	31	28	12	27	1.93
45057641--45057868	28	8.3	28	81	10	238	31	28	12	27	1.93
45058855--45058902	23	2.1	23	92	0	78	25	14	14	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45063617--45063677	17	3.6	17	77	0	59	34	27	18	19	1.95
45063617--45063684	17	4.0	17	76	0	55	35	27	16	20	1.94
45068217--45068315	43	2.3	43	85	0	135	28	30	19	22	1.98
45068563--45068603	19	2.2	19	86	4	57	70	4	2	21	1.18
45068529--45068602	31	2.4	31	78	13	82	66	4	2	27	1.23
45072054--45072097	18	2.4	18	85	7	54	36	0	40	22	1.54
45072227--45072454	76	3.0	75	87	5	343	26	10	8	54	1.62
45072736--45072790	14	3.9	14	77	13	51	41	36	1	20	1.63
45072827--45072890	22	2.9	22	90	0	101	25	46	3	25	1.67
45073065--45073197	25	5.4	25	68	15	91	43	27	0	28	1.60
45073183--45073236	7	7.7	7	78	0	54	50	25	0	24	1.50
45073131--45073222	46	2.0	46	95	0	166	44	26	0	29	1.54
45073144--45073228	21	3.9	21	76	11	89	45	25	0	28	1.54
45073393--45073573	41	4.4	42	83	5	210	17	22	21	38	1.93
45081188--45081370	69	2.6	67	83	6	222	37	19	22	20	1.94
45082699--45082811	52	2.2	52	82	6	133	23	21	21	34	1.97
45087053--45087189	37	3.7	37	95	1	231	22	32	19	25	1.98
45087333--45087455	48	2.6	48	97	0	228	31	30	4	33	1.79
45087378--45087482	27	4.1	27	69	18	98	31	30	4	33	1.78
45087453--45087951	48	10.1	48	78	10	497	30	27	6	35	1.81
45087333--45087578	123	2.0	123	92	1	413	30	28	5	34	1.80
45087453--45087951	96	5.1	96	88	6	737	30	27	6	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45087651--45087678	14	2.0	14	100	0	56	35	21	0	42	1.53
45087603--45087726	62	2.0	62	98	0	239	31	27	4	36	1.78
45087453--45087945	144	3.3	151	86	9	717	30	27	6	35	1.82
45087607--45087705	31	3.2	31	63	21	80	30	28	6	35	1.81
45087454--45087951	206	2.5	199	89	6	758	30	27	6	35	1.81
45087453--45087918	254	1.8	254	93	0	806	30	27	6	35	1.81
45091488--45091615	28	4.5	28	83	5	150	31	28	18	21	1.97
45091647--45091861	40	5.4	40	96	0	385	27	26	20	25	1.99
45093130--45093269	37	3.8	37	96	1	246	22	32	20	24	1.98
45093410--45093656	48	5.1	48	95	0	431	29	28	6	35	1.81
45093626--45093684	28	2.1	28	93	0	100	28	28	5	37	1.78
45093578--45093732	76	2.0	76	93	0	265	30	27	5	36	1.80
45093530--45093780	124	2.0	124	95	0	448	30	27	5	35	1.81
45093654--45093871	48	4.5	48	95	0	391	31	27	5	35	1.81
45093482--45093828	172	2.0	172	94	0	613	30	27	6	35	1.81
45093434--45093871	220	2.0	220	95	0	795	30	27	6	35	1.81
45095780--45095936	29	5.5	28	90	2	215	28	12	26	33	1.92
45095780--45095935	57	2.7	58	89	3	219	28	12	25	33	1.92
45100186--45100251	34	1.9	34	90	0	105	27	22	22	27	1.99
45110190--45110232	14	3.0	14	89	3	59	2	18	0	79	0.85
45112471--45112539	25	2.8	25	77	4	68	31	24	17	26	1.97
45119469--45119505	18	2.1	18	90	5	58	29	8	5	56	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45128506--45128539	17	2.0	17	88	0	50	61	2	2	32	1.26
45132554--45132682	65	2.0	65	98	0	249	37	8	6	46	1.61
45134183--45134258	25	3.2	25	67	14	79	21	17	14	47	1.82
45157382--45157825	224	2.0	224	99	0	879	36	18	9	35	1.84
45158526--45158585	29	2.1	29	100	0	120	48	10	6	35	1.63
45163956--45164061	48	2.2	48	91	0	167	34	4	27	33	1.78
45166715--45166892	27	6.6	27	84	3	205	29	28	15	26	1.96
45166736--45166891	82	1.9	81	88	3	233	29	28	15	26	1.96
45171007--45171184	27	6.6	27	83	3	205	26	15	28	29	1.96
45171008--45171163	82	1.9	81	88	3	233	26	15	28	29	1.96
45171004--45171184	82	2.2	81	83	2	229	27	15	27	29	1.96
45175542--45175719	27	6.6	27	84	3	205	29	28	15	26	1.96
45175563--45175718	82	1.9	81	88	3	233	29	28	15	26	1.96
45193477--45193586	44	2.5	44	96	0	202	33	10	23	32	1.88
45198646--45198902	130	2.0	130	99	0	505	31	14	17	36	1.90
45199878--45199902	13	1.9	13	100	0	50	24	8	16	52	1.70
45205493--45205553	29	2.1	28	90	3	95	27	14	29	27	1.95
45205500--45205616	29	4.0	29	87	2	137	25	14	31	28	1.95
45211522--45211556	8	4.4	8	85	0	52	51	20	22	5	1.68
45211767--45211912	29	5.2	29	84	8	153	28	15	30	26	1.95
45211780--45211917	56	2.5	56	83	9	158	26	15	31	26	1.96
45214185--45214230	20	2.3	20	80	0	56	43	32	10	13	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45214274--45214314	20	2.0	20	90	0	64	41	29	14	14	1.86
45214154--45214392	98	2.4	98	90	0	370	35	27	17	18	1.94
45214443--45214525	27	3.1	26	82	5	103	36	19	22	21	1.95
45214750--45215242	27	18.2	27	83	0	491	26	17	17	38	1.92
45215226--45215566	27	12.7	27	78	6	318	31	10	19	38	1.86
45215228--45215543	161	2.0	161	91	1	508	31	11	18	38	1.86
45217860--45218098	98	2.4	98	87	0	343	35	27	17	19	1.94
45218152--45218231	27	3.0	26	88	3	106	36	21	22	20	1.95
45218458--45218946	27	18.1	27	83	2	516	26	17	17	38	1.93
45218458--45218946	54	9.1	54	87	2	599	26	17	17	38	1.93
45218458--45218946	81	6.0	81	85	0	586	26	17	17	38	1.93
45218930--45219270	27	12.7	27	79	8	340	31	9	19	39	1.84
45218928--45219270	161	2.1	160	91	0	542	31	9	19	39	1.84
45222814--45223012	42	4.6	41	75	7	146	27	27	15	29	1.96
45222816--45222969	84	1.8	84	85	2	220	25	28	16	29	1.97
45235435--45235611	39	4.5	39	84	2	221	30	27	23	19	1.98
45239767--45239793	13	2.1	13	100	0	54	40	22	0	37	1.54
45242710--45243287	47	12.4	47	88	6	849	28	29	8	33	1.87
45242761--45243277	273	1.9	273	94	3	921	29	28	8	33	1.87
45246042--45246295	39	6.5	39	89	2	377	28	28	22	19	1.98
45248051--45248170	56	2.1	56	98	0	231	45	9	23	22	1.81
45249306--45249488	79	2.3	81	84	7	232	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45249307--45249490	40	4.6	40	83	9	216	23	22	28	25	2.00
45249359--45249523	79	2.1	79	84	6	210	25	21	27	25	1.99
45266272--45266316	21	2.1	21	100	0	90	22	17	6	53	1.67
45268449--45268487	6	6.2	6	85	11	51	12	0	5	82	0.83
45268449--45268487	14	3.0	13	88	7	53	12	0	5	82	0.83
45269034--45269070	19	2.0	18	89	5	56	13	13	5	67	1.39
45271475--45271504	15	2.0	15	93	0	51	36	0	16	46	1.47
45271970--45272177	56	3.7	56	88	0	308	25	15	23	36	1.93
45271969--45272211	112	2.2	111	83	2	315	24	16	23	35	1.94
45274716--45274740	5	5.0	5	100	0	50	80	0	20	0	0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316