genome.fa.s1.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  152  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48177002--48177026	13	1.9	13	100	0	50	32	20	16	32	1.94
48177559--48177736	27	6.6	26	83	6	187	26	15	28	29	1.96
48177560--48177715	82	1.9	81	88	3	233	26	16	28	29	1.96
48177556--48177736	82	2.2	81	83	2	229	26	16	27	29	1.96
48177641--48177747	27	3.9	27	85	1	70	26	14	28	30	1.95
48179749--48179947	40	5.0	41	79	6	212	25	26	22	26	2.00
48183154--48183326	46	3.7	46	75	13	183	23	21	26	29	1.99
48183151--48183321	93	1.8	93	92	0	288	22	21	26	28	1.99
48188453--48188510	30	1.9	31	85	3	82	25	25	6	41	1.80
48204793--48204820	8	3.5	8	100	0	56	25	0	21	53	1.46
48219454--48219564	27	4.2	26	87	5	150	37	23	23	15	1.93
48221807--48221930	27	4.6	27	92	2	185	30	29	14	25	1.95
48221807--48221930	55	2.3	54	90	1	185	30	29	14	25	1.95
48223401--48223425	13	1.9	13	100	0	50	32	20	16	32	1.94
48223974--48224151	27	6.6	27	83	3	205	26	15	28	29	1.96
48223975--48224130	82	1.9	81	88	3	233	26	15	28	29	1.96
48223971--48224151	82	2.2	81	83	2	229	27	15	27	29	1.96
48224056--48224162	27	3.9	27	85	1	70	26	14	28	30	1.95
48231302--48231326	13	1.9	13	100	0	50	32	20	16	32	1.94
48231871--48232047	27	6.6	27	85	4	205	26	15	28	29	1.96
48231872--48232026	82	1.9	80	88	5	231	26	15	28	29	1.96
48231868--48232047	82	2.2	80	83	3	227	26	15	27	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48231952--48232058	27	3.9	27	85	1	70	26	14	28	30	1.95
48235885--48235922	19	2.0	20	85	15	53	36	0	23	39	1.55
48244556--48244706	43	3.5	40	77	12	108	25	19	26	29	1.98
48244557--48244706	42	3.5	43	74	14	130	25	19	26	28	1.99
48246623--48246735	44	2.6	43	83	6	140	24	19	24	30	1.98
48246625--48246789	43	3.8	42	76	6	134	27	18	24	29	1.98
48250186--48250236	16	3.2	16	97	0	93	52	13	11	21	1.72
48253994--48254026	16	2.1	16	94	5	59	15	0	15	69	1.19
48255727--48255906	89	2.0	89	93	0	306	31	18	21	27	1.97
48256598--48256662	19	3.2	21	71	18	57	47	13	7	30	1.71
48259865--48259952	6	14.3	6	71	17	65	48	14	17	19	1.81
48259874--48259984	31	3.5	31	87	1	132	50	12	16	20	1.77
48260089--48260184	27	3.6	26	83	5	111	36	20	22	19	1.95
48260344--48260407	22	2.9	22	81	9	85	35	23	21	18	1.95
48260841--48261015	27	6.3	27	83	9	208	24	22	20	33	1.97
48260997--48261177	54	3.4	54	89	0	283	31	8	20	39	1.83
48261000--48261177	27	6.6	27	84	1	232	31	8	20	39	1.82
48262624--48262742	46	2.6	44	84	8	159	26	19	29	24	1.98
48267219--48267275	30	1.9	30	88	0	87	31	22	7	38	1.81
48269852--48269962	43	2.6	43	79	1	125	32	24	18	24	1.97
48284330--48284385	27	2.1	27	93	0	94	37	23	10	28	1.88
48284337--48284518	27	6.7	27	80	1	143	39	22	7	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48284510--48284750	27	8.9	27	81	3	270	35	17	20	26	1.95
48284511--48284753	81	3.0	81	84	5	305	35	18	20	26	1.95
48287295--48287542	47	5.3	47	90	3	351	31	10	31	27	1.89
48287393--48287514	22	5.3	22	62	21	61	32	12	29	25	1.92
48290213--48290481	47	5.6	47	91	1	403	33	8	29	28	1.87
48290600--48290678	37	2.1	37	88	4	115	25	18	30	25	1.98
48293957--48294033	31	2.5	31	86	0	100	20	16	12	49	1.79
48293957--48294044	6	14.3	6	72	13	72	20	15	13	50	1.78
48294982--48295015	18	1.9	17	88	5	50	20	17	17	44	1.87
48302866--48303043	27	6.6	27	78	5	153	28	28	16	26	1.97
48316909--48316934	12	2.2	12	100	0	52	0	7	0	92	0.39
48317479--48317513	7	4.9	7	89	6	52	17	0	37	45	1.48
48317486--48317520	15	2.3	15	95	0	61	17	0	34	48	1.47
48321278--48321427	74	2.0	74	94	0	264	40	16	11	32	1.84
48323280--48323344	29	2.3	29	83	2	78	41	3	24	30	1.70
48323828--48323993	42	3.8	42	74	15	133	28	13	25	32	1.93
48325000--48325135	42	3.2	42	91	0	200	16	25	36	20	1.94
48343708--48343805	39	2.5	39	88	3	135	26	19	27	26	1.99
48346347--48346404	30	1.9	30	82	6	73	22	34	25	17	1.96
48348735--48348798	28	2.3	28	97	0	119	18	17	35	28	1.93
48349124--48349453	53	6.2	53	85	4	396	38	21	10	29	1.86
48349115--48349441	80	4.1	81	86	2	394	39	20	10	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48349124--48349453	27	12.3	27	81	6	359	38	21	10	29	1.86
48354087--48354140	26	2.1	26	96	0	99	35	14	16	33	1.90
48355780--48355825	22	2.1	22	88	11	69	73	6	4	15	1.19
48370673--48370856	40	4.6	39	80	9	194	25	22	27	25	2.00
48370725--48370889	79	2.1	79	82	6	192	26	20	27	25	1.99
48379215--48379289	11	6.9	11	78	3	62	40	17	1	41	1.58
48379422--48379532	47	2.3	47	85	10	154	36	9	4	49	1.55
48379422--48379552	48	2.7	46	80	14	149	33	9	5	51	1.56
48380530--48380562	7	4.7	7	100	0	66	27	0	15	57	1.38
48380558--48380582	7	3.6	7	100	0	50	28	0	16	56	1.41
48380537--48380582	14	3.3	14	85	14	60	28	0	15	56	1.39
48384729--48385083	126	2.8	126	91	0	557	27	17	18	37	1.93
48385627--48385697	19	3.8	19	80	14	94	43	21	0	35	1.53
48385808--48385869	32	1.9	33	90	3	99	51	17	0	30	1.46
48388332--48388375	20	2.1	21	83	4	54	61	4	2	31	1.28
48388544--48388587	17	2.6	17	92	3	72	65	4	0	29	1.12
48390678--48390725	24	2.0	24	91	0	78	35	2	10	52	1.48
48393335--48393455	61	2.0	61	93	0	206	32	20	14	33	1.92
48406047--48406231	40	4.7	40	83	6	225	25	27	22	24	2.00
48406049--48406231	79	2.3	81	83	7	223	25	27	22	24	2.00
48407356--48407587	56	4.1	56	98	0	437	22	22	9	45	1.80
48411158--48411447	55	5.5	53	73	13	217	24	23	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48411147--48411461	54	6.0	54	76	11	276	24	23	15	35	1.94
48411333--48411533	47	4.1	47	78	13	226	26	23	14	35	1.93
48411278--48411508	101	2.3	101	96	0	417	25	23	13	36	1.92
48411594--48411678	44	1.9	44	92	0	143	21	23	20	35	1.96
48411961--48412016	29	1.9	29	100	0	112	28	25	10	35	1.89
48411962--48412023	29	2.1	29	93	0	106	32	24	8	35	1.85
48412826--48412850	12	2.1	12	100	0	50	8	28	24	40	1.83
48419810--48419897	41	2.1	41	82	0	104	22	18	31	27	1.97
48420790--48420832	15	2.9	15	86	6	52	27	0	13	58	1.37
48426256--48426332	38	2.0	38	100	0	154	31	12	15	40	1.85
48430821--48431075	55	4.8	53	79	8	252	36	17	24	21	1.94
48430831--48431028	108	1.8	110	89	4	312	34	17	25	22	1.95
48431257--48431287	16	1.9	16	93	0	53	41	0	22	35	1.54
48438380--48438632	53	4.8	52	79	9	232	36	17	24	21	1.94
48438822--48438852	16	1.9	16	93	0	53	41	0	22	35	1.54
48443693--48443795	37	2.8	37	92	0	170	26	32	18	23	1.97
48443936--48444382	48	9.3	48	95	0	743	30	27	6	35	1.82
48447710--48447988	40	7.0	40	93	0	450	27	29	21	20	1.98
48449275--48449377	37	2.8	37	95	0	179	25	32	19	23	1.98
48449518--48450012	48	10.3	48	96	0	846	30	27	6	35	1.82
48456542--48456579	18	2.1	18	85	9	51	28	10	39	21	1.86
48467181--48467210	11	2.9	10	90	9	51	20	3	16	60	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48467181--48467229	17	2.6	18	84	12	55	18	6	18	57	1.61
48467923--48468089	43	3.9	42	76	9	160	28	13	23	33	1.93
48471242--48471391	42	3.5	42	86	3	194	29	16	25	29	1.96
48472988--48473109	46	2.6	47	86	5	156	27	22	13	36	1.92
48480593--48480711	43	2.8	42	76	12	129	23	19	28	28	1.98
48491113--48491258	48	3.0	48	86	0	211	27	18	26	27	1.98
48491118--48491275	48	3.3	47	83	3	181	29	18	25	26	1.98
48507296--48507372	24	3.2	24	88	0	109	38	5	36	19	1.74
48508991--48509071	33	2.4	34	75	8	85	28	16	25	29	1.96
48516864--48517244	47	8.1	47	92	2	613	32	9	29	28	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316