genome.fa.s1.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  213  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69666995--69667268	48	5.8	46	74	9	169	26	19	29	24	1.99
69678140--69678258	55	2.2	54	80	5	141	24	27	25	22	2.00
69681504--69681676	47	3.7	46	75	11	156	24	31	20	24	1.98
69681416--69681679	94	2.8	90	77	7	260	24	30	20	25	1.98
69682454--69682588	60	2.2	60	81	6	148	27	25	19	28	1.99
69682581--69682620	20	2.0	20	85	9	55	27	25	20	27	1.99
69691957--69692213	39	6.5	39	91	1	390	29	28	22	20	1.98
69695091--69695226	60	2.3	59	81	8	141	25	26	21	26	1.99
69697837--69698081	49	4.9	49	84	3	328	29	25	17	26	1.98
69697850--69698080	100	2.3	98	86	2	318	29	25	17	26	1.98
69698728--69698787	30	2.0	30	83	6	77	26	26	10	36	1.88
69700835--69700873	15	2.5	15	87	4	51	53	17	12	15	1.72
69703629--69703853	49	4.5	49	86	3	306	29	26	17	26	1.97
69703629--69703860	100	2.3	98	88	2	338	29	26	17	26	1.98
69706046--69706136	46	2.0	46	86	0	128	27	31	6	34	1.83
69706150--69706645	47	10.6	47	93	0	785	26	28	12	33	1.92
69713100--69713143	20	2.3	19	88	4	61	27	15	9	47	1.76
69714641--69714904	47	5.6	46	70	16	141	23	28	20	28	1.99
69717611--69717890	50	5.8	48	79	5	244	29	18	27	24	1.98
69718639--69718675	16	2.3	16	90	0	65	54	5	8	32	1.53
69719183--69719496	164	1.9	164	97	0	592	40	5	19	34	1.75
69719914--69719996	42	2.0	43	85	2	114	24	16	24	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69719869--69720027	43	3.7	41	72	12	117	25	17	25	31	1.97
69723668--69723794	47	2.7	48	85	8	172	29	14	29	25	1.95
69724767--69724828	28	2.2	28	88	0	88	24	17	38	19	1.93
69740567--69740744	27	6.6	27	84	3	205	29	28	15	26	1.96
69740588--69740743	82	1.9	81	88	3	233	29	28	15	26	1.96
69744922--69745008	44	2.0	41	84	6	111	31	10	8	50	1.65
69745208--69745295	23	3.6	23	81	14	104	43	2	7	46	1.45
69747028--69747075	5	9.4	5	86	13	71	37	0	2	60	1.09
69747338--69747367	15	2.0	15	93	0	51	20	6	10	63	1.47
69751753--69751943	48	4.0	48	84	2	258	35	29	17	18	1.94
69752786--69752819	16	2.2	16	89	5	52	32	14	0	52	1.42
69754500--69754593	40	2.3	40	80	7	118	31	14	22	30	1.94
69761461--69761619	40	3.9	40	76	4	122	27	13	25	33	1.94
69766564--69766612	24	2.0	24	96	0	89	34	8	18	38	1.80
69768216--69768252	13	2.8	13	95	0	65	8	10	37	43	1.69
69786123--69786270	40	3.7	40	93	0	251	28	28	18	24	1.98
69789510--69789553	16	2.8	16	96	3	81	11	31	11	45	1.76
69794668--69794835	29	5.9	28	80	8	153	27	14	20	37	1.91
69796597--69796749	43	3.6	43	79	5	159	24	16	25	33	1.96
69796629--69796767	43	3.3	41	76	15	115	23	17	28	30	1.97
69799132--69799201	27	2.6	27	90	2	104	31	27	14	27	1.95
69799132--69799229	28	3.5	28	87	2	126	31	27	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69817813--69818085	40	6.8	40	90	0	420	29	20	27	22	1.98
69817813--69818085	80	3.4	80	94	0	465	29	20	27	22	1.98
69820450--69820578	25	5.2	25	77	3	134	30	14	19	35	1.92
69820450--69820578	50	2.6	50	81	2	152	30	14	19	35	1.92
69823837--69823961	46	2.7	46	89	0	196	21	20	28	29	1.98
69826928--69826983	15	3.7	15	83	7	69	16	16	7	60	1.56
69829383--69829555	46	3.7	46	75	13	183	24	20	26	28	1.99
69836194--69836313	43	2.8	42	81	7	152	29	15	26	28	1.96
69843406--69843457	26	2.0	26	92	0	86	21	28	25	25	1.99
69847893--69848047	42	3.7	42	86	3	213	30	16	25	27	1.96
69847893--69848047	85	1.8	84	86	4	222	30	16	25	27	1.96
69854077--69854136	29	2.0	30	81	15	72	61	0	18	20	1.34
69854822--69854901	42	1.9	42	84	5	108	25	35	21	18	1.96
69860377--69860527	77	2.0	77	95	0	275	46	9	19	24	1.80
69862659--69862768	42	2.6	43	81	5	134	25	25	21	27	2.00
69863507--69863658	75	2.0	76	88	1	225	48	17	10	23	1.78
69864794--69864829	17	2.1	17	100	0	72	47	11	19	22	1.80
69870827--69870960	40	3.4	40	88	3	182	29	25	22	22	1.99
69878936--69879080	39	3.7	38	86	3	191	31	25	19	24	1.98
69878936--69879080	77	1.9	78	86	1	211	31	25	19	24	1.98
69885341--69885518	27	6.6	26	79	6	160	25	16	28	28	1.97
69885338--69885518	82	2.2	81	81	2	211	25	17	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69904165--69904192	9	3.1	9	100	0	56	35	10	10	42	1.74
69906729--69906978	40	6.3	40	94	0	394	23	20	29	26	1.99
69906676--69906978	120	2.5	119	86	2	401	24	20	28	26	1.99
69914724--69914967	40	6.3	40	89	6	340	23	20	29	26	1.99
69914671--69914967	114	2.5	119	81	7	347	24	20	28	26	1.99
69914724--69914967	74	3.1	79	89	4	338	23	20	29	26	1.99
69914746--69915002	79	3.3	80	86	4	269	24	20	28	26	1.99
69919631--69919687	20	2.9	18	82	12	60	42	10	10	36	1.74
69923909--69923966	20	2.9	19	82	5	71	39	8	12	39	1.73
69938958--69938983	5	5.2	5	100	0	52	80	0	0	19	0.71
69938940--69938978	17	2.3	17	81	0	51	74	0	0	25	0.82
69940350--69940397	22	2.1	23	88	3	71	29	4	0	66	1.10
69940535--69940572	18	2.1	18	90	0	58	63	0	0	36	0.95
69945511--69945661	28	5.4	28	91	1	214	26	11	27	33	1.92
69952538--69952706	46	3.7	46	77	10	191	21	18	28	30	1.97
69952535--69952705	93	1.8	93	92	0	288	21	19	28	30	1.97
69955649--69955728	15	5.4	15	77	7	83	10	18	13	57	1.64
69955640--69955727	30	3.0	30	80	11	92	10	18	15	55	1.68
69959996--69960127	46	2.9	45	83	2	147	31	18	17	32	1.94
69963483--69963710	40	5.7	39	76	12	135	27	21	26	24	2.00
69963562--69963710	80	1.9	80	85	0	208	27	23	25	23	2.00
69971679--69971822	40	3.6	40	90	0	216	27	25	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69979967--69980118	56	2.8	54	90	2	223	26	15	24	33	1.95
69979967--69980147	56	3.3	56	85	6	192	25	15	25	32	1.95
69982954--69983166	48	4.4	48	93	0	363	30	26	7	35	1.84
69986423--69986518	28	3.4	27	76	11	86	33	29	16	20	1.95
69986550--69986877	40	8.2	40	93	0	557	27	28	19	24	1.99
69988835--69989012	27	6.6	27	84	3	205	29	28	15	26	1.96
69988856--69989011	82	1.9	81	88	3	233	29	28	15	26	1.96
69993584--69993761	27	6.6	27	84	3	205	29	28	15	26	1.96
69993605--69993760	82	1.9	81	88	3	233	29	28	15	26	1.96
70000277--70000454	27	6.6	27	84	3	205	29	28	15	26	1.96
70000298--70000453	82	1.9	81	88	3	233	29	28	15	26	1.96
70002851--70002950	37	2.7	37	93	0	173	24	34	18	24	1.96
70003123--70003530	48	8.5	48	93	0	681	30	27	7	34	1.85
70006850--70006973	50	2.8	42	75	17	131	28	16	26	29	1.97
70006881--70007025	50	3.0	49	85	2	184	28	18	26	26	1.98
70014931--70015064	66	2.0	66	87	5	191	49	5	24	20	1.71
70015066--70015136	35	2.0	35	100	0	142	33	11	14	40	1.81
70015448--70015478	9	3.3	9	95	4	53	16	0	22	61	1.34
70018038--70018162	43	2.9	43	91	3	189	22	21	29	26	1.99
70022467--70022954	244	2.0	243	96	0	895	28	15	26	29	1.96
70039142--70039214	27	2.7	26	73	23	71	31	0	24	43	1.54
70039174--70039214	16	2.5	16	88	11	57	31	0	24	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70039369--70039452	28	3.0	28	89	1	123	20	3	29	46	1.67
70039373--70039466	28	3.6	24	76	18	82	17	4	32	45	1.67
70039669--70039742	21	3.4	23	76	16	86	13	20	27	39	1.90
70039682--70039742	21	3.0	21	85	2	88	14	22	27	34	1.94
70040846--70040950	53	2.0	53	83	5	131	26	14	26	32	1.94
70043995--70044211	47	4.7	46	75	7	172	24	30	17	27	1.97
70045755--70045968	117	1.8	117	98	0	419	39	18	8	33	1.82
70046238--70046499	48	5.5	48	87	1	364	27	26	19	26	1.99
70051004--70051105	40	2.5	40	90	0	159	29	16	23	30	1.96
70062838--70062864	9	3.0	9	100	0	54	44	0	22	33	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316