genome.fa.s1.2.7.7.80.10.50.1000.221.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  221  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72391753--72391790	6	6.3	6	100	0	76	15	0	0	84	0.63
72391758--72391797	18	2.2	18	90	0	62	17	5	0	77	0.94
72395828--72395977	54	2.8	53	82	6	160	19	26	17	37	1.93
72395829--72395977	27	5.5	27	76	12	108	19	26	17	36	1.94
72396806--72396849	22	2.0	22	95	0	79	36	6	20	36	1.79
72397222--72397264	22	1.9	23	85	4	61	48	20	4	25	1.69
72399033--72399078	20	2.3	20	85	7	58	41	8	13	36	1.75
72402638--72402700	31	2.1	31	82	11	78	19	28	25	26	1.98
72405984--72406279	105	2.8	104	84	3	344	28	15	25	30	1.96
72405984--72406279	35	8.5	35	85	4	312	28	15	25	30	1.96
72407567--72407879	49	6.7	46	76	11	212	26	19	29	25	1.98
72407572--72407935	49	7.7	49	75	9	206	26	19	28	25	1.99
72407757--72407937	98	1.9	97	83	5	240	26	20	28	23	1.99
72413537--72413688	40	3.8	40	93	5	254	23	28	25	23	1.99
72417953--72418038	43	2.0	43	97	2	165	41	11	16	30	1.83
72418636--72418696	30	2.0	30	93	0	104	42	4	27	24	1.75
72429527--72429784	40	6.5	40	92	1	403	24	22	27	25	2.00
72431983--72432128	27	5.4	27	85	1	175	36	17	19	26	1.94
72431983--72432111	55	2.4	54	85	2	186	37	19	17	25	1.94
72432781--72432832	27	2.0	26	84	3	68	17	26	21	34	1.95
72435806--72435838	15	2.2	15	100	0	66	78	0	6	15	0.93
72446055--72446103	20	2.7	18	77	22	57	42	2	4	51	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72450140--72450296	43	3.7	43	79	7	176	31	24	17	26	1.97
72461742--72462103	174	2.1	174	88	0	535	26	28	25	19	1.99
72463156--72463313	43	3.7	43	78	9	153	32	25	15	26	1.96
72463669--72463697	14	2.1	14	100	0	58	44	13	13	27	1.82
72474654--72474694	19	2.2	19	91	8	66	58	0	31	9	1.31
72477438--72477590	27	5.6	27	93	3	243	26	13	28	30	1.94
72477438--72477590	55	2.8	55	94	0	261	26	13	28	30	1.94
72485532--72485660	28	4.7	28	95	2	226	26	13	28	31	1.94
72485532--72485662	55	2.4	55	97	0	244	26	13	29	30	1.94
72495771--72495922	40	3.8	40	93	0	236	26	22	26	23	2.00
72495726--72495916	79	2.4	79	83	4	224	28	21	25	24	1.99
72496085--72496136	25	2.1	25	82	7	61	32	7	28	30	1.85
72499613--72500133	47	11.1	47	94	0	862	32	8	29	29	1.87
72500252--72500330	37	2.1	37	88	4	115	25	18	30	25	1.98
72506803--72506920	57	2.1	57	100	0	236	38	9	21	31	1.85
72513639--72513678	13	3.2	13	92	3	64	32	0	0	67	0.91
72513639--72513702	6	11.0	6	78	9	62	31	0	3	65	1.08
72513650--72513691	19	2.3	19	83	4	50	30	0	4	64	1.14
72518577--72518697	43	2.9	42	78	7	136	33	14	23	27	1.94
72523924--72524145	40	5.6	40	92	1	358	27	26	22	22	1.99
72534534--72534737	43	4.8	43	77	3	196	25	15	27	31	1.96
72540067--72540210	27	5.3	27	82	3	173	26	24	9	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72540067--72540210	54	2.7	54	86	2	191	26	24	9	39	1.86
72540202--72540367	27	6.1	27	79	7	140	37	22	11	28	1.89
72540209--72540368	54	3.0	53	80	3	194	38	21	11	28	1.88
72540242--72540368	27	4.7	27	87	3	175	39	22	9	28	1.85
72540322--72540389	27	2.5	27	83	4	66	50	19	2	27	1.62
72540370--72540455	27	3.1	27	78	17	79	40	13	8	37	1.75
72540242--72540449	108	1.9	108	82	2	254	41	19	8	30	1.81
72540239--72540475	110	2.2	108	80	1	258	40	19	9	30	1.83
72540509--72540573	27	2.4	27	82	5	78	35	15	24	24	1.94
72541382--72541465	25	3.4	24	85	8	107	28	22	22	26	1.99
72541409--72541479	25	2.9	24	87	8	72	26	21	23	28	1.99
72541600--72541733	42	3.2	42	94	0	241	31	15	20	32	1.94
72541757--72541840	31	2.7	31	96	1	152	27	17	27	27	1.98
72544311--72544394	44	1.9	44	85	4	116	39	11	23	25	1.89
72544535--72544654	47	2.6	47	91	0	195	36	12	24	26	1.91
72544627--72544839	54	3.9	54	77	4	178	36	16	23	23	1.94
72544641--72544829	55	3.5	53	77	6	173	35	18	23	22	1.96
72544641--72544841	53	3.8	52	78	5	177	35	17	23	22	1.95
72545217--72545319	51	2.0	51	100	0	206	30	11	11	46	1.76
72548512--72548609	27	3.5	28	90	2	135	26	13	28	31	1.94
72548540--72548622	27	3.0	27	87	5	96	30	12	25	32	1.92
72548512--72548623	28	4.0	27	83	6	98	28	12	25	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72559208--72559305	27	3.5	28	90	2	135	26	13	28	31	1.94
72559236--72559318	27	3.0	27	87	5	96	30	12	25	32	1.92
72559208--72559319	28	4.0	27	83	6	98	28	12	25	33	1.92
72566674--72566795	47	2.6	47	97	0	226	36	13	24	25	1.93
72566782--72566970	55	3.5	53	77	5	139	34	18	25	21	1.96
72566774--72566981	53	3.9	54	78	5	197	34	17	25	22	1.96
72570130--72570211	26	3.2	26	91	0	137	34	7	23	35	1.82
72571808--72571948	27	5.2	27	79	14	166	18	23	22	35	1.96
72571805--72571948	54	2.7	54	91	2	227	18	23	22	35	1.96
72575792--72575823	16	1.9	17	93	6	57	37	6	25	31	1.81
72580427--72580652	49	4.7	47	71	13	169	26	16	29	26	1.97
72581604--72581634	15	2.1	15	93	0	53	48	12	19	19	1.81
72581841--72581888	21	2.3	21	88	0	69	14	29	27	29	1.95
72581857--72581900	21	2.1	21	87	4	63	11	34	27	27	1.91
72584872--72585271	55	7.5	54	73	12	278	24	24	16	35	1.95
72584894--72585271	209	1.8	209	91	1	632	24	24	16	35	1.95
72588849--72589145	120	2.5	120	88	1	427	27	27	20	23	1.99
72588858--72589148	40	7.3	40	82	8	324	28	27	20	23	1.99
72590755--72590924	47	3.6	47	94	0	295	26	22	12	38	1.90
72597288--72597454	46	3.6	46	74	15	164	28	19	29	22	1.98
72597288--72597608	47	6.8	48	70	15	188	27	18	29	24	1.98
72605697--72605914	68	3.3	64	78	9	156	30	16	27	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72607909--72607974	25	2.6	25	90	0	105	27	19	21	31	1.97
72608025--72608094	25	2.8	25	84	0	86	22	20	24	32	1.97
72607863--72608100	130	1.8	130	82	1	307	25	17	24	32	1.97
72608034--72608147	25	4.6	25	80	2	86	22	16	23	36	1.94
72611745--72611796	23	2.3	23	96	3	97	42	3	17	36	1.67
72612649--72612768	56	2.1	56	98	0	231	45	9	23	22	1.81
72613905--72614089	40	4.6	39	82	5	194	24	22	27	25	2.00
72613905--72614087	79	2.3	81	83	7	223	24	22	27	25	2.00
72613958--72614122	79	2.1	79	82	6	192	26	20	27	26	1.99
72620506--72620687	91	2.0	93	97	2	350	28	20	25	25	1.99
72620673--72620792	56	2.1	56	98	0	231	45	9	23	22	1.81
72621929--72622113	40	4.7	40	82	7	209	23	22	28	25	1.99
72621982--72622146	79	2.1	79	84	6	210	25	21	27	25	1.99
72626160--72626222	28	2.2	28	86	5	83	33	4	28	33	1.78
72628854--72628897	22	2.0	22	95	0	79	34	4	36	25	1.76
72629695--72629753	31	1.9	30	89	3	91	27	37	13	22	1.91
72633201--72633263	28	2.2	28	91	0	99	31	6	30	31	1.83
72634080--72634119	20	2.0	20	85	0	53	62	0	0	37	0.95
72634100--72634145	11	4.2	11	83	10	51	52	2	0	45	1.13
72634094--72634145	11	4.8	10	80	13	50	55	1	0	42	1.10
72635493--72635532	21	1.9	21	85	10	55	30	0	2	67	1.04
72635490--72635542	12	4.4	12	78	0	52	24	0	1	73	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72640477--72640587	55	2.0	55	100	0	222	35	9	18	37	1.82
72641311--72641335	13	1.9	13	100	0	50	44	8	0	48	1.32
72643030--72643218	56	3.4	56	86	2	272	32	23	15	28	1.95
72647103--72647562	27	17.1	26	79	7	449	30	10	20	38	1.86
72647103--72647562	54	8.5	53	81	4	494	30	10	20	38	1.86
72647103--72647548	134	3.3	133	84	3	554	30	10	20	38	1.86
72647878--72647941	28	2.3	28	83	0	74	25	34	18	21	1.96
72652961--72653014	27	2.0	27	100	0	108	33	14	14	37	1.88
72655846--72655889	22	2.0	23	90	4	72	2	4	20	72	1.13
72656114--72656156	22	2.0	23	81	9	54	48	2	2	46	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316