genome.fa.s1.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  132  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42188904--42189125	112	2.0	112	97	0	417	34	19	4	40	1.73
42202396--42202579	79	2.3	81	81	11	213	25	27	21	25	2.00
42202396--42202579	40	4.6	41	82	12	190	25	27	21	25	2.00
42210278--42210493	40	5.5	40	82	7	160	24	27	22	25	2.00
42210311--42210493	40	4.7	40	85	8	225	24	27	22	24	2.00
42218616--42218660	22	2.0	22	83	8	56	75	6	2	15	1.11
42222071--42222096	12	2.2	12	100	0	52	42	15	0	42	1.47
42222812--42222948	43	3.2	43	81	12	181	29	25	17	27	1.97
42222812--42222981	43	4.0	42	77	9	164	30	23	16	29	1.96
42222812--42222985	86	2.0	86	85	6	237	30	23	16	29	1.96
42222815--42223035	86	2.6	87	82	5	234	30	24	16	28	1.96
42235047--42235115	34	2.0	34	97	0	129	53	8	13	24	1.67
42243560--42243767	43	4.9	42	85	7	260	30	27	16	25	1.97
42243539--42243771	86	2.7	86	82	10	289	30	28	15	25	1.96
42251041--42251263	43	5.2	43	86	4	306	29	26	17	26	1.98
42251824--42251867	22	2.0	22	100	0	88	27	27	0	45	1.54
42253264--42253302	19	2.1	19	90	0	60	64	0	7	28	1.21
42270609--42270760	43	3.5	42	78	10	157	27	17	25	29	1.98
42273088--42273165	37	2.1	37	85	0	102	26	30	17	24	1.97
42273284--42273697	47	8.7	47	94	2	670	29	28	8	33	1.86
42277595--42277906	40	7.8	40	92	0	507	25	27	21	24	1.99
42279320--42279680	47	7.7	47	92	3	561	29	28	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42279320--42279680	137	2.6	140	90	4	559	29	28	8	33	1.86
42288015--42288550	268	2.0	268	96	0	991	28	17	28	26	1.97
42292835--42292994	43	3.7	42	80	4	158	24	18	25	32	1.97
42294852--42294979	29	4.5	28	88	2	175	32	25	12	28	1.92
42294851--42294979	57	2.3	57	87	2	188	32	26	12	28	1.92
42302832--42302988	29	5.5	29	89	3	221	33	26	12	28	1.92
42302832--42302988	57	2.7	58	89	3	221	33	26	12	28	1.92
42308180--42308246	33	2.0	33	94	0	116	34	23	20	20	1.97
42308315--42308383	30	2.3	31	87	7	97	23	20	18	37	1.94
42308467--42308508	19	2.3	19	84	8	52	35	4	11	47	1.61
42314831--42314934	51	2.0	53	96	3	194	32	11	7	48	1.68
42327385--42327516	40	3.3	40	86	3	151	25	26	21	26	1.99
42335334--42335518	79	2.3	82	81	9	213	24	27	21	26	1.99
42335315--42335518	40	5.1	40	77	8	202	24	26	21	26	1.99
42342036--42342125	34	2.6	34	79	6	92	26	25	21	26	1.99
42350749--42350787	21	1.9	20	84	5	51	25	28	35	10	1.89
42352023--42352190	46	3.6	45	73	12	142	22	28	21	27	1.99
42358418--42358473	21	2.7	21	91	2	87	25	28	33	12	1.92
42360556--42360771	40	5.4	40	90	4	305	25	27	21	25	1.99
42363060--42363128	33	2.1	33	97	0	129	40	13	17	28	1.87
42368576--42368753	40	4.5	40	88	4	238	24	27	23	24	2.00
42370861--42370973	46	2.4	46	85	7	140	23	28	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42387948--42387977	2	15.0	2	100	0	60	0	0	50	50	1.00
42401357--42401528	40	4.3	40	91	3	258	27	26	19	26	1.99
42401350--42401575	80	2.8	81	82	7	266	27	26	19	26	1.99
42401383--42401567	40	4.6	40	89	2	142	28	26	18	27	1.98
42409361--42409586	40	5.7	40	86	5	246	26	27	21	24	1.99
42414414--42414481	35	1.9	35	84	0	91	35	11	17	35	1.87
42419543--42419667	49	2.6	49	83	2	153	22	29	20	28	1.98
42419722--42419854	46	2.9	46	86	6	173	21	30	19	28	1.98
42420486--42420536	20	2.7	18	82	14	59	37	21	0	41	1.54
42425856--42425985	49	2.7	49	75	2	118	23	26	20	28	1.99
42426003--42426169	46	3.6	46	77	9	153	24	28	17	29	1.97
42431188--42431246	28	2.1	28	96	0	109	27	8	27	37	1.85
42435673--42435857	40	4.6	39	82	4	194	24	22	27	25	2.00
42435726--42435880	79	2.0	79	82	7	190	25	21	27	25	1.99
42440944--42440982	21	1.9	20	89	5	60	25	7	25	41	1.82
42445949--42446007	20	3.0	20	70	9	57	13	25	16	44	1.85
42445920--42446026	40	2.7	40	82	2	126	11	28	18	42	1.85
42453268--42453301	17	1.9	18	94	5	61	17	41	23	17	1.90
42455771--42456102	48	6.9	47	82	4	263	27	19	27	25	1.99
42455784--42456109	96	3.4	96	81	4	370	27	19	26	25	1.99
42455786--42456104	144	2.2	146	84	4	405	27	20	27	25	1.99
42460620--42460714	25	3.8	25	94	0	163	27	21	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42460607--42460716	50	2.2	50	90	4	170	27	20	23	28	1.99
42460920--42461087	27	6.2	27	88	2	230	29	20	15	34	1.94
42460920--42461087	54	3.1	54	92	0	264	29	20	15	34	1.94
42461109--42461440	27	12.3	27	81	6	262	31	9	18	39	1.83
42461109--42461440	54	6.1	54	77	7	298	31	9	18	39	1.83
42461107--42461420	81	3.9	79	77	5	306	32	9	18	39	1.84
42462496--42462553	30	1.9	30	82	6	73	15	29	31	24	1.95
42464908--42465025	56	2.1	56	98	0	227	25	12	33	28	1.93
42465423--42465687	27	9.8	27	89	0	386	29	25	7	37	1.83
42465639--42465729	27	3.4	27	82	0	101	35	24	7	32	1.84
42465666--42465900	54	4.4	54	81	6	208	39	21	8	30	1.83
42465477--42465726	81	3.1	81	86	1	232	31	26	7	35	1.83
42465707--42465914	27	7.8	26	83	5	211	40	21	8	29	1.82
42465680--42465914	81	2.9	81	82	3	276	40	21	8	29	1.83
42465903--42466118	27	8.0	26	87	5	270	35	18	21	25	1.95
42465903--42466119	54	4.0	54	88	2	303	35	18	21	24	1.95
42465903--42466118	81	2.7	80	88	2	299	35	18	21	25	1.95
42466323--42466391	25	2.8	25	93	0	111	26	26	23	24	2.00
42466323--42466418	25	3.9	24	82	10	81	28	23	22	25	2.00
42468284--42468467	40	4.6	40	90	2	282	24	27	24	23	2.00
42476333--42476516	40	4.6	40	90	4	266	26	27	22	23	2.00
42479772--42479828	20	2.8	20	94	0	96	36	12	19	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42479878--42479986	26	4.3	26	90	6	156	28	20	22	29	1.98
42480554--42480588	18	1.9	18	88	0	52	34	25	8	31	1.86
42486479--42486530	26	2.0	27	85	7	72	21	7	44	26	1.79
42487643--42487688	24	1.9	24	86	8	67	36	21	13	28	1.91
42487731--42487782	20	2.6	20	93	0	86	38	13	19	28	1.89
42498738--42498918	39	4.6	39	90	3	249	25	18	28	27	1.98
42498775--42498952	78	2.3	78	79	5	191	26	18	28	26	1.98
42506576--42506798	40	5.6	40	88	3	281	24	20	27	27	1.99
42506652--42506833	79	2.3	80	83	1	224	25	20	28	25	1.99
42510236--42510423	55	3.5	54	78	6	175	36	18	23	21	1.95
42515993--42516165	48	3.6	48	79	6	192	21	30	21	26	1.99
42515986--42516165	96	1.9	94	85	6	245	22	30	21	26	1.99
42519584--42519684	37	2.7	37	85	0	121	31	27	14	25	1.95
42519621--42519727	37	2.9	37	95	0	187	25	28	16	28	1.97
42519583--42519755	74	2.4	74	81	1	177	27	27	16	28	1.97
42523360--42523539	20	9.0	20	80	2	182	14	22	26	37	1.92
42523364--42523539	40	4.4	40	84	2	210	14	21	26	37	1.92
42523541--42523597	26	2.2	26	80	0	69	21	12	21	45	1.83
42526223--42526400	27	6.6	27	80	3	160	28	29	16	25	1.97
42526244--42526399	82	1.9	81	84	3	206	28	29	16	25	1.97
42532294--42532468	48	3.6	48	80	3	192	21	28	20	29	1.98
42532289--42532471	96	1.9	96	85	4	253	21	28	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42545241--42545282	20	2.1	20	86	0	57	11	30	0	57	1.35
42561244--42561310	25	2.7	25	86	9	100	49	10	17	22	1.77
42561395--42561474	26	3.0	26	83	3	97	40	21	21	17	1.92
42562124--42562771	27	24.0	27	88	0	857	24	20	18	36	1.95
42562763--42563079	27	11.8	27	76	3	237	33	9	18	38	1.83
42562814--42563100	80	3.6	80	80	7	289	31	9	19	39	1.83
42562810--42563038	53	4.3	53	80	7	221	34	9	16	39	1.81
42565093--42565159	25	2.7	25	79	9	82	47	7	19	25	1.75
42565515--42565580	22	3.0	22	72	12	64	34	22	22	19	1.96
42566006--42566409	27	15.0	27	84	1	461	24	21	18	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316