genome.fa.s1.2.7.7.80.10.50.1000.241.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  241  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79402931--79403272	27	12.7	27	76	9	139	32	9	20	37	1.85
79402931--79403115	81	2.3	80	80	3	192	34	9	19	36	1.84
79402983--79403308	81	4.0	81	84	1	332	33	9	19	37	1.84
79403039--79403298	27	9.6	27	84	0	304	31	8	20	39	1.83
79404230--79404290	30	2.1	30	90	3	97	29	34	3	32	1.74
79405452--79405511	27	2.3	26	85	2	75	35	20	23	21	1.96
79405846--79406305	27	17.0	27	88	0	587	24	20	18	36	1.95
79406333--79406638	27	11.3	27	83	1	283	30	9	20	39	1.84
79407570--79407631	30	2.1	30	100	0	124	27	37	3	32	1.73
79408795--79408854	27	2.3	26	88	2	84	36	20	21	21	1.95
79408893--79408944	27	2.0	26	84	3	68	34	21	26	17	1.95
79408822--79408963	67	2.1	68	86	5	196	30	21	28	19	1.97
79409219--79409639	27	15.9	27	84	5	439	24	19	18	37	1.94
79409193--79409639	81	5.6	81	80	6	502	24	19	18	36	1.94
79409493--79409532	19	2.1	19	85	0	53	22	22	17	37	1.94
79409407--79409590	100	1.8	100	94	0	323	25	20	17	35	1.95
79409407--79409611	100	2.0	100	90	1	322	25	20	17	36	1.94
79409685--79409999	27	11.7	27	85	0	337	30	8	20	40	1.83
79411626--79411677	27	2.0	26	84	3	68	34	21	26	17	1.95
79411922--79412389	27	17.3	27	86	2	500	24	20	18	36	1.95
79411926--79412387	81	5.7	81	87	0	606	24	20	18	36	1.95
79412372--79412712	27	12.6	27	78	9	142	32	9	20	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79412342--79412712	81	4.6	81	80	7	315	31	10	20	37	1.86
79412408--79412712	27	11.3	27	84	4	310	31	9	20	38	1.85
79419240--79419360	38	3.1	38	89	2	161	21	21	23	33	1.98
79426262--79427022	48	15.9	48	95	0	1324	35	6	27	30	1.82
79427163--79427265	37	2.8	37	90	0	170	23	20	31	25	1.98
79429651--79429692	20	2.1	20	90	0	66	35	30	2	30	1.71
79429780--79429901	43	2.9	42	81	7	140	27	26	18	28	1.98
79434679--79434715	17	2.2	17	95	0	65	43	27	10	18	1.83
79444744--79444910	47	3.6	44	79	10	158	21	30	19	28	1.98
79444689--79444958	94	2.9	90	79	10	303	22	29	20	28	1.98
79445907--79445938	13	2.5	13	100	0	64	56	18	0	25	1.42
79447558--79447688	33	4.2	33	70	15	107	29	20	13	35	1.91
79448357--79448397	20	2.0	22	85	9	59	29	19	0	51	1.47
79452946--79453208	47	5.6	45	78	7	231	22	29	18	29	1.97
79467079--79467251	46	3.7	46	75	13	192	30	27	20	21	1.98
79467675--79467734	30	2.0	30	90	0	93	30	25	8	36	1.85
79484882--79485011	47	2.7	49	84	5	158	22	28	20	28	1.99
79484880--79485154	45	5.9	47	71	11	158	22	28	19	29	1.98
79496647--79496674	12	2.3	12	100	0	56	32	32	17	17	1.94
79503098--79503170	36	2.0	36	97	0	137	35	16	19	28	1.93
79509647--79509776	47	2.7	49	83	5	158	21	29	20	28	1.98
79509745--79509914	94	1.8	92	83	5	225	24	29	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79517912--79517975	30	2.2	29	83	5	76	25	9	29	35	1.87
79518311--79518663	48	7.5	47	71	10	197	27	18	28	25	1.98
79518360--79518661	94	3.2	95	79	10	273	27	19	27	25	1.99
79521053--79521139	37	2.4	37	90	3	122	26	32	18	22	1.97
79521280--79521569	48	6.0	48	95	1	501	31	27	6	34	1.82
79524074--79524109	14	2.6	14	86	0	54	25	13	30	30	1.94
79527125--79527160	18	2.0	18	94	0	63	41	11	22	25	1.86
79528887--79529066	27	6.5	28	88	3	240	26	12	29	31	1.93
79528887--79529066	55	3.3	55	90	0	261	26	12	29	31	1.93
79536292--79536443	27	5.6	27	92	3	232	27	13	28	30	1.94
79536292--79536443	55	2.8	55	92	0	241	27	13	28	30	1.94
79538881--79538909	15	1.9	15	100	0	58	37	13	6	41	1.72
79542474--79542505	15	2.1	15	94	0	55	28	18	6	46	1.73
79543154--79543194	21	2.0	21	90	4	66	29	0	21	48	1.50
79543770--79543872	54	1.9	54	84	4	136	33	10	18	36	1.85
79547202--79547270	29	2.4	29	87	0	102	39	30	14	15	1.88
79557588--79557629	9	4.9	9	85	8	52	23	35	0	40	1.55
79566108--79566137	4	7.5	4	92	0	51	76	0	23	0	0.78
79572278--79572409	56	2.4	56	89	0	219	29	14	22	33	1.94
79573451--79573485	16	2.1	17	89	5	54	17	2	22	57	1.53
79583985--79584153	48	3.6	48	81	6	209	30	18	27	23	1.98
79584173--79584266	49	1.9	49	80	8	111	27	20	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79593559--79593603	22	2.1	21	84	15	58	44	8	24	22	1.81
79595652--79595691	19	2.0	20	90	4	64	40	10	15	35	1.80
79600778--79600907	55	2.4	55	79	10	149	16	26	28	28	1.97
79618597--79618635	20	2.0	20	94	0	69	30	30	12	25	1.93
79624005--79624099	48	2.0	47	85	2	127	48	5	12	33	1.64
79631638--79631684	17	2.8	17	90	0	67	17	27	40	14	1.89
79631810--79632017	27	7.7	27	90	0	308	24	13	20	41	1.88
79637925--79637979	25	2.2	25	83	0	65	25	23	21	29	1.99
79639452--79639525	37	2.0	37	94	0	130	44	4	14	36	1.65
79641390--79641441	20	2.6	20	100	0	104	19	32	32	15	1.93
79642393--79642459	31	2.2	30	89	2	98	43	11	20	23	1.85
79652829--79653017	55	3.5	53	82	5	227	21	24	18	35	1.95
79652999--79653213	95	2.3	90	78	9	216	22	24	18	35	1.96
79664578--79664651	14	5.4	13	70	12	58	58	10	9	21	1.60
79664579--79664663	42	2.0	42	100	0	170	55	9	9	25	1.62
79664581--79664648	21	3.2	21	66	22	61	57	8	10	23	1.60
79664579--79664678	42	2.3	42	93	3	155	54	10	9	27	1.63
79671701--79671871	42	4.1	41	74	12	152	29	27	21	22	1.99
79676684--79676791	43	2.5	42	79	7	110	30	25	17	25	1.97
79694528--79694560	13	2.3	15	90	10	52	51	0	0	48	1.00
79697092--79697261	41	4.2	40	77	5	137	51	7	22	18	1.70
79697092--79697261	81	2.1	80	79	6	173	51	7	22	18	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79707633--79707679	20	2.3	22	75	20	57	53	12	4	29	1.58
79709730--79709901	40	4.3	40	86	4	197	26	27	21	24	1.99
79709730--79709954	80	2.8	80	76	8	181	26	27	21	24	1.99
79709886--79709962	40	1.9	41	84	7	104	28	28	19	23	1.98
79717073--79717244	40	4.3	40	85	2	177	27	28	19	24	1.99
79717073--79717297	40	5.7	40	81	7	163	27	28	20	24	1.99
79717229--79717306	40	1.9	41	82	10	97	28	28	20	23	1.99
79752693--79752899	40	5.2	40	89	1	247	26	28	20	25	1.99
79752658--79752955	80	3.7	80	77	9	245	25	27	20	26	1.99
79752693--79752955	120	2.2	119	80	4	280	26	27	20	25	1.99
79754590--79754812	119	1.9	120	83	8	294	25	27	21	25	2.00
79754588--79754812	40	5.7	40	82	8	262	25	27	21	25	1.99
79762618--79762800	79	2.3	80	82	9	214	24	27	22	25	2.00
79762616--79762800	40	4.7	40	80	10	209	24	27	22	24	2.00
79765168--79765233	9	6.8	10	80	13	59	37	7	19	34	1.80
79765168--79765232	29	2.2	29	89	5	96	38	7	18	35	1.80
79765165--79765238	5	15.4	5	75	18	68	37	6	20	35	1.79
79765206--79765250	20	2.2	20	96	0	81	37	8	20	33	1.83
79765197--79765238	9	4.4	9	82	11	57	35	4	21	38	1.75
79765300--79765487	26	7.3	26	86	3	258	28	21	24	26	1.99
79765300--79765487	52	3.7	52	92	3	312	28	21	24	26	1.99
79773112--79773151	21	2.0	20	90	5	62	20	20	40	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79773496--79773561	9	6.8	10	80	13	59	37	7	19	34	1.80
79773496--79773560	29	2.2	29	89	5	96	38	7	18	35	1.80
79773493--79773566	5	15.4	5	75	18	68	37	6	20	35	1.79
79773534--79773578	20	2.2	20	96	0	81	37	8	20	33	1.83
79773525--79773566	9	4.4	9	82	11	57	35	4	21	38	1.75
79773628--79773706	26	3.2	26	84	7	103	30	20	22	26	1.98
79773940--79773981	7	6.0	7	100	0	84	57	0	14	28	1.38
79778735--79778763	10	2.9	10	100	0	58	37	10	41	10	1.73
79791708--79791992	47	6.1	47	92	0	428	34	11	28	25	1.90
79791780--79791902	22	5.3	22	68	24	92	33	14	28	23	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316