Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  295  of  316  ( 37835 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97321877--97321915
12
3.5
11
86
13
53
17
10
2
69
1.28
97321951--97322015
12
5.3
12
82
8
69
9
6
3
81
0.96
97321951--97322015
6
10.7
6
82
9
60
9
6
3
81
0.96
97326637--97326688
27
1.9
27
84
7
70
15
3
5
75
1.14
97344443--97344476
16
2.1
17
88
5
52
17
20
14
47
1.83
97353316--97353349
16
2.1
17
88
5
52
17
20
14
47
1.83
97356759--97356823
9
6.8
9
76
13
58
36
6
20
36
1.77
97356767--97356831
20
3.2
20
93
0
103
38
7
20
33
1.81
97356767--97356845
40
2.0
39
80
9
88
37
8
18
34
1.82
97356878--97356947
24
2.8
25
87
8
90
28
22
24
24
1.99
97356878--97356954
25
3.1
24
85
9
93
32
20
22
24
1.98
97356902--97356960
25
2.4
26
76
18
63
30
18
23
27
1.98
97357167--97357250
31
2.7
31
96
1
152
32
17
26
23
1.97
97362898--97362944
20
2.3
20
100
0
94
36
10
19
34
1.86
97362991--97363061
25
2.8
25
85
10
83
29
22
22
25
1.99
97363016--97363074
25
2.4
26
76
18
63
30
18
22
28
1.97
97363281--97363364
31
2.7
31
88
1
134
32
16
25
26
1.96
97364511--97364601
6
15.3
6
94
2
157
16
2
0
81
0.79
97367691--97367816
61
2.1
58
89
4
189
50
3
3
41
1.39
97369517--97369616
39
2.6
38
84
3
119
49
10
4
37
1.55
97370808--97370835
5
5.6
5
100
0
56
64
0
0
35
0.94
97375250--97375279
5
5.8
5
92
7
51
83
0
0
16
0.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97376804--97376832
12
2.4
12
100
0
58
6
13
31
48
1.69
97376877--97377097
113
1.9
114
80
2
257
35
19
22
22
1.96
97377825--97377927
14
7.2
14
77
10
75
18
0
41
38
1.57
97377830--97377927
29
3.4
28
79
9
92
17
1
42
38
1.56
97377811--97377904
36
2.7
35
81
8
109
17
1
40
41
1.56
97377924--97378269
100
3.4
100
68
19
304
26
2
27
43
1.66
97377946--97378432
202
2.4
202
91
2
782
26
2
27
43
1.67
97378322--97378374
21
2.6
21
90
3
81
22
1
33
41
1.65
97381308--97381337
14
2.2
13
94
5
51
50
0
13
36
1.42
97382003--97382112
17
6.5
15
77
20
78
37
10
14
37
1.81
97382001--97382126
35
3.5
36
85
11
186
37
11
14
37
1.81
97382001--97382126
54
2.3
54
97
0
243
37
11
14
37
1.81
97382001--97382126
19
6.9
19
87
10
201
37
11
14
37
1.81
97382001--97382149
19
7.8
22
85
11
94
36
10
14
38
1.80
97385054--97385083
15
2.0
15
93
0
51
46
16
0
36
1.47
97385046--97385193
64
2.4
63
85
4
201
45
14
3
36
1.62
97385144--97385215
21
3.2
21
72
14
72
47
13
4
34
1.63
97385121--97385292
46
3.6
46
83
7
227
45
14
4
35
1.66
97385046--97385372
113
2.9
113
81
9
391
45
14
3
36
1.62
97385262--97385387
16
7.9
16
78
7
130
46
16
3
33
1.63
97385041--97385391
9
39.7
9
65
18
94
45
15
3
35
1.63
97387348--97387440
48
1.9
48
91
0
150
26
17
23
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97392056--97392160
27
3.9
27
84
9
126
20
24
20
34
1.96
97394308--97394348
3
13.7
3
89
0
55
26
7
0
65
1.18
97395048--97395184
44
3.0
44
78
10
166
35
16
10
38
1.82
97404328--97404360
17
1.9
17
93
0
57
39
3
6
51
1.42
97412366--97412516
52
2.9
52
77
8
162
31
25
17
26
1.97
97412553--97412615
20
3.2
20
90
0
99
19
31
31
17
1.95
97413138--97413167
11
2.9
10
90
9
51
70
13
6
10
1.34
97415949--97416000
24
2.2
24
89
0
77
36
3
9
50
1.54
97419939--97419974
18
2.0
18
89
10
56
69
0
0
30
0.89
97420228--97420303
22
3.7
21
76
15
68
40
17
6
35
1.75
97420264--97420335
19
3.9
19
85
10
114
34
15
12
37
1.85
97420257--97420335
35
2.2
37
84
13
112
34
16
11
37
1.85
97420701--97420797
45
2.2
45
84
0
131
26
29
12
30
1.93
97420811--97421104
78
3.8
78
87
2
412
26
24
17
32
1.97
97422338--97422369
16
1.9
17
93
6
57
12
6
0
81
0.87
97432387--97432423
19
2.0
19
89
5
58
70
0
2
27
1.01
97434034--97434109
22
3.7
21
76
15
68
40
17
6
35
1.75
97434063--97434160
35
2.7
37
87
12
150
35
16
10
37
1.82
97434070--97434160
19
4.9
19
92
8
161
36
15
10
37
1.83
97442836--97442915
25
3.2
25
73
19
94
25
7
11
56
1.60
97442836--97442936
50
2.0
50
100
0
202
26
7
11
53
1.65
97442856--97442936
25
3.2
25
74
19
96
27
8
12
51
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97451973--97452029
27
2.1
27
83
0
69
24
22
22
29
1.99
97461503--97461535
16
2.1
16
88
5
50
45
3
15
36
1.61
97466630--97467017
194
2.0
194
98
0
749
27
16
17
39
1.90
97470012--97470063
23
2.3
22
75
21
54
9
23
1
65
1.32
97473883--97473942
31
1.9
32
89
3
95
38
11
31
18
1.87
97476395--97476433
20
2.0
20
94
0
69
35
0
12
51
1.40
97482838--97482878
21
1.9
22
85
5
57
31
24
4
39
1.76
97483568--97483605
19
2.1
19
90
5
60
21
34
13
31
1.91
97483572--97483609
19
2.0
19
100
0
76
21
31
15
31
1.94
97485452--97485500
3
16.0
3
78
4
53
63
6
4
26
1.36
97485666--97485698
12
2.8
12
90
0
57
66
0
3
30
1.06
97489648--97489721
17
4.1
17
77
16
76
27
50
1
21
1.57
97489648--97489722
39
1.9
39
91
0
123
26
49
1
22
1.58
97490252--97490283
15
2.2
14
94
5
55
37
0
0
62
0.95
97490239--97490286
19
2.5
20
77
16
57
39
0
0
60
0.97
97495766--97495791
11
2.4
11
100
0
52
57
0
23
19
1.40
97496438--97496480
22
2.0
22
86
9
61
34
0
0
65
0.93
97496451--97496540
17
5.2
17
67
26
55
30
2
5
62
1.30
97503437--97503563
64
2.0
64
92
0
209
28
19
16
35
1.94
97503810--97504075
134
2.0
134
92
1
444
28
18
22
31
1.97
97503943--97504375
177
2.4
176
90
1
668
30
18
22
28
1.97
97504212--97504508
133
2.2
132
93
0
495
30
19
21
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97504456--97504553
45
2.2
46
87
5
137
28
19
24
27
1.98
97504344--97504686
178
1.9
178
92
2
573
29
20
22
27
1.98
97504604--97504751
45
3.3
45
66
19
128
29
18
20
31
1.96
97504610--97504784
89
2.0
89
97
0
332
28
19
21
31
1.97
97504522--97504928
222
1.8
221
85
5
579
29
19
21
28
1.98
97504436--97504985
133
4.1
135
70
17
423
29
20
22
28
1.98
97506552--97506610
26
2.3
26
100
0
118
42
13
6
37
1.71
97508886--97508972
45
1.9
45
86
4
122
31
12
9
47
1.73
97515426--97515589
43
3.8
43
95
0
292
26
18
32
22
1.97
97515413--97515595
86
2.1
86
93
2
312
24
18
31
25
1.97
97521468--97521618
9
16.9
9
81
1
169
34
2
16
46
1.61
97521469--97521628
27
6.0
27
84
1
196
36
2
15
45
1.60
97521733--97521788
15
3.8
15
76
21
64
51
0
1
46
1.11
97524366--97524546
61
3.0
61
98
0
344
55
17
7
19
1.66
97526882--97526931
25
2.0
25
84
11
66
40
26
4
30
1.74
97526949--97526988
14
2.9
14
88
0
53
47
22
0
30
1.52
97527144--97527322
41
4.4
41
87
3
254
20
18
26
34
1.96
97527144--97527322
82
2.2
82
93
1
306
20
18
26
34
1.96
97530075--97530141
25
2.7
25
76
2
73
46
23
7
22
1.77
97535641--97535683
22
2.0
22
100
0
86
27
30
23
18
1.98
97541578--97541620
16
2.6
16
85
3
59
23
6
6
62
1.45
97554076--97554208
47
2.9
43
76
11
140
28
30
20
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97554073--97554208
46
3.0
46
75
12
154
27
30
20
21
1.98
97554080--97554223
46
3.1
44
70
21
116
29
29
20
21
1.98
97556723--97556791
30
2.3
30
85
2
95
56
17
17
8
1.65
97556734--97556796
15
4.2
15
74
8
65
55
15
17
11
1.68
97559731--97559905
46
3.8
45
74
7
181
29
30
20
20
1.97
97559738--97559910
93
1.9
93
92
0
292
28
30
20
20
1.98
97574971--97575138
47
3.6
47
91
0
264
32
8
30
27
1.86
97584596--97584700
30
3.5
30
88
0
156
20
27
27
24
1.99
97590705--97590949
43
5.4
47
80
7
228
28
15
25
30
1.96
97592592--97592722
35
3.6
35
76
11
129
32
23
11
32
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316