Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  16  of  316  ( 37835 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4950099--4950135
19
2.0
19
85
15
51
54
0
0
45
1.00
4950177--4950362
59
3.1
58
69
19
157
51
3
2
42
1.34
4950079--4950368
120
2.4
120
89
3
456
49
4
2
43
1.35
4953654--4953688
18
1.9
18
100
0
70
60
0
28
11
1.32
4954846--4955055
105
2.0
105
100
0
420
30
12
9
47
1.73
4965743--4965769
12
2.2
12
100
0
54
25
18
14
40
1.89
4967721--4967761
21
2.0
21
90
0
64
19
24
21
34
1.97
4971627--4971674
12
3.9
12
83
2
60
62
0
20
16
1.33
4971627--4971674
6
7.8
6
88
2
51
62
0
20
16
1.33
4973037--4973061
11
2.3
11
100
0
50
16
8
16
60
1.58
4973509--4973558
21
2.4
21
90
3
84
38
20
18
24
1.93
4976208--4976260
21
2.5
21
84
0
61
3
49
16
30
1.64
4981908--4982007
9
10.9
9
70
12
69
36
2
15
47
1.57
4981908--4982013
27
3.9
27
72
14
81
35
1
16
46
1.58
4982272--4982667
102
3.9
102
89
2
575
54
4
6
34
1.45
4990391--4990453
30
2.1
31
82
8
76
38
4
7
49
1.53
4997989--4998021
17
2.0
17
94
5
59
36
15
0
48
1.45
4998302--4998575
46
6.0
46
91
0
388
21
23
14
40
1.90
5000789--5000831
14
3.0
14
80
16
52
51
2
0
46
1.13
5001804--5002435
315
2.0
316
99
0
1239
43
14
11
30
1.81
5012882--5013396
120
4.3
120
94
1
829
41
2
5
49
1.39
5013086--5013115
16
1.9
15
93
6
51
40
0
10
50
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5013107--5013141
18
2.0
17
88
5
52
45
0
0
54
0.99
5013240--5013286
16
3.0
16
78
12
53
46
0
2
51
1.13
5013236--5013286
15
3.5
15
82
12
54
47
0
1
50
1.12
5013613--5013666
16
3.4
16
94
0
90
31
35
0
33
1.58
5029031--5029104
20
3.8
20
72
13
64
41
17
4
36
1.68
5030582--5030659
12
6.6
11
72
20
52
37
7
1
53
1.38
5030777--5030819
12
3.5
12
90
3
59
25
2
4
67
1.22
5030788--5030824
4
9.0
4
88
5
56
24
0
2
72
0.97
5031214--5031441
127
1.8
127
82
5
302
26
18
19
35
1.95
5035774--5035810
11
3.6
11
86
13
53
56
5
0
37
1.22
5036365--5036431
26
2.8
23
75
14
64
62
8
2
25
1.39
5036514--5036548
3
11.7
3
93
0
61
62
2
0
34
1.10
5050849--5051027
31
5.8
31
91
1
288
27
19
27
25
1.99
5050849--5051027
61
2.9
61
92
1
286
27
19
27
25
1.99
5050849--5051027
92
1.9
93
95
1
324
27
19
27
25
1.99
5051044--5051168
47
2.7
47
86
1
162
28
16
26
29
1.96
5051139--5051253
42
2.7
43
85
4
153
30
15
26
27
1.96
5053142--5053209
29
2.3
30
87
5
93
47
5
17
29
1.71
5054096--5054130
15
2.3
15
100
0
70
34
0
25
40
1.56
5055627--5055764
46
3.0
46
90
2
197
39
14
23
22
1.91
5057036--5057076
20
2.0
20
100
0
82
34
19
9
36
1.85
5063235--5063264
14
2.1
14
100
0
60
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5063238--5063273
14
2.6
14
90
0
54
66
0
2
30
1.06
5066680--5066716
18
2.1
18
100
0
74
5
27
10
56
1.55
5068227--5068255
5
5.8
5
100
0
58
62
0
0
37
0.96
5071280--5071318
19
2.0
20
95
5
71
17
0
10
71
1.12
5071280--5071344
19
2.9
23
84
13
66
23
0
10
66
1.23
5072142--5072208
20
3.3
20
72
12
73
32
2
8
55
1.46
5072104--5072208
41
2.6
41
92
4
171
36
1
9
52
1.45
5072120--5072188
21
3.3
21
70
11
70
39
1
8
50
1.42
5077576--5077803
46
5.0
46
92
1
332
39
14
23
21
1.90
5078064--5078110
25
2.0
25
83
8
62
53
4
14
27
1.60
5081772--5081829
30
2.0
29
90
10
91
13
10
0
75
1.04
5081948--5082079
41
3.2
41
87
7
169
31
36
12
20
1.89
5082836--5083048
118
1.8
118
95
0
390
22
16
31
29
1.96
5083193--5083239
5
9.0
5
84
13
51
85
0
14
0
0.61
5083193--5083235
11
3.9
11
93
6
70
86
0
13
0
0.58
5083193--5083235
6
7.7
6
87
12
65
86
0
13
0
0.58
5086564--5086612
19
2.4
21
80
10
57
51
4
2
42
1.32
5086579--5086618
21
1.9
21
85
10
55
52
2
0
45
1.14
5091335--5091375
21
2.0
21
90
0
64
26
7
0
65
1.18
5091447--5091595
3
48.7
3
73
12
108
29
5
2
63
1.28
5092178--5092226
25
2.0
25
84
8
64
22
14
4
59
1.52
5093244--5093293
24
2.0
26
85
14
70
66
0
8
26
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5093276--5093323
21
2.2
21
85
3
60
56
2
16
25
1.51
5093344--5093377
4
8.8
4
87
6
52
73
0
2
23
0.97
5093349--5093379
15
2.1
15
100
0
62
74
0
0
25
0.82
5093524--5093561
13
2.9
14
80
11
53
73
0
2
23
0.95
5094756--5094793
19
2.0
19
94
0
67
39
15
18
26
1.91
5095377--5095547
83
2.0
82
89
6
261
44
11
6
38
1.66
5095997--5096047
13
3.9
13
76
0
57
31
7
27
33
1.85
5095997--5096049
26
2.0
26
92
0
88
32
7
26
33
1.84
5097875--5097907
17
1.9
17
93
0
57
48
0
6
45
1.27
5101330--5101373
15
2.9
15
80
12
54
63
0
9
27
1.24
5101719--5101762
3
15.0
3
95
4
81
68
0
0
31
0.90
5101907--5101945
19
2.1
19
85
9
53
61
0
7
30
1.24
5104138--5104203
31
2.1
31
83
8
80
36
15
0
48
1.45
5105475--5105507
17
1.9
17
88
11
50
21
6
0
72
1.05
5112170--5112364
44
4.5
44
75
5
171
16
25
23
34
1.95
5112150--5112327
87
2.0
88
94
1
313
19
22
23
35
1.96
5112300--5112502
87
2.3
87
93
0
361
20
23
23
32
1.98
5112170--5112430
131
2.0
131
84
3
346
18
24
22
34
1.96
5117206--5117333
46
2.8
46
85
5
161
20
21
26
31
1.98
5119187--5119219
7
4.9
7
85
7
50
15
0
0
84
0.61
5119170--5119233
30
2.1
29
82
5
74
18
3
1
76
1.00
5120217--5120256
20
2.0
20
85
9
55
35
7
5
52
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5122469--5122502
15
2.2
16
89
5
52
70
0
5
23
1.09
5123798--5123921
56
2.2
58
85
10
166
23
13
5
57
1.58
5124090--5124122
14
2.4
14
95
5
59
69
18
0
12
1.18
5126680--5126751
28
2.6
29
91
4
96
43
18
4
34
1.69
5126688--5126759
28
2.6
28
95
0
126
40
19
6
33
1.78
5128375--5128422
25
1.9
25
91
0
78
50
0
6
43
1.27
5128373--5128428
25
2.2
25
80
0
76
51
0
5
42
1.24
5136977--5137200
107
2.1
105
87
3
313
34
16
17
30
1.93
5137371--5137412
21
2.0
20
82
13
50
61
14
4
19
1.49
5137587--5138044
3
150.7
3
76
11
281
61
3
6
28
1.37
5149044--5149151
26
4.2
26
91
0
180
32
6
24
37
1.81
5155097--5155131
15
2.2
16
90
5
54
71
0
5
22
1.07
5156325--5156437
58
1.9
58
92
0
190
42
16
11
29
1.83
5167613--5167641
10
2.9
10
100
0
58
62
0
0
37
0.96
5174925--5174966
17
2.5
16
82
17
50
38
2
2
57
1.25
5188438--5188509
35
2.1
35
100
0
144
31
13
19
34
1.91
5192827--5192874
21
2.3
21
86
13
64
64
4
0
31
1.12
5198843--5198877
15
2.3
15
90
0
52
42
2
0
54
1.15
5200330--5200507
26
7.1
24
79
10
135
59
6
6
27
1.47
5200323--5200590
27
10.2
26
74
12
147
60
5
5
28
1.42
5200354--5200540
101
1.8
103
85
6
265
59
6
5
27
1.45
5200513--5200583
29
2.5
27
71
24
65
61
1
5
30
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5200620--5200710
25
3.6
25
77
12
96
63
5
4
26
1.35
5200617--5200714
51
1.9
51
89
2
153
63
5
5
26
1.36
5202204--5202500
44
6.8
44
76
6
199
26
21
21
30
1.98
5202205--5202512
132
2.3
132
83
3
370
25
21
21
31
1.98
5202253--5202501
44
5.7
43
78
3
255
26
20
22
29
1.99
5202254--5202541
44
6.5
44
79
3
238
27
19
22
30
1.98
5202205--5202541
88
3.8
88
77
5
297
26
20
21
32
1.98
5202285--5202543
132
2.0
132
85
1
358
26
20
22
31
1.98
5210511--5210542
14
2.1
16
88
11
50
43
6
28
21
1.77
5212388--5212569
26
7.2
24
73
16
136
60
6
5
27
1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316