genome.fa.s1.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  150  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47615949--47615998	20	2.5	20	80	6	57	46	8	14	32	1.73
47632976--47633015	15	3.0	13	83	16	55	47	0	0	52	1.00
47633000--47633063	25	2.6	25	68	20	62	56	1	3	39	1.25
47632990--47633073	32	2.7	31	72	24	77	52	1	2	44	1.21
47633138--47633177	18	2.2	18	86	0	53	60	0	0	40	0.97
47633908--47633943	14	2.6	15	87	12	51	66	0	0	33	0.92
47638010--47638051	22	1.9	22	90	0	66	23	30	2	42	1.67
47638003--47638053	11	4.7	10	81	13	57	25	33	1	39	1.67
47643483--47643742	126	2.1	127	86	3	364	28	17	16	37	1.92
47643800--47643928	66	2.0	64	89	3	195	43	11	3	41	1.56
47644004--47644045	19	2.3	19	87	4	59	54	35	0	9	1.33
47644071--47644431	179	2.0	180	97	0	679	28	20	22	28	1.98
47645575--47645628	22	2.5	21	82	5	63	75	7	0	16	1.01
47647305--47647351	21	2.2	22	84	3	60	23	14	12	48	1.78
47652848--47652876	2	14.5	2	100	0	58	51	0	0	48	1.00
47653289--47653413	62	2.0	62	95	0	223	21	16	16	46	1.84
47654220--47654246	13	2.1	13	100	0	54	22	22	25	29	1.99
47658585--47658855	62	4.4	62	83	3	246	24	23	29	22	1.99
47664587--47664651	18	3.7	18	76	12	55	44	1	0	53	1.09
47664762--47664808	23	2.0	23	84	8	60	51	0	8	40	1.33
47672507--47672670	87	1.9	86	82	3	204	25	14	23	37	1.92
47673575--47673692	55	2.1	57	80	4	132	36	17	14	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47683414--47683551	24	5.6	24	72	9	82	29	27	15	26	1.96
47683473--47683586	50	2.3	50	89	0	174	32	28	14	25	1.94
47683407--47683566	25	6.5	25	75	7	112	29	27	16	26	1.97
47683995--47684058	33	1.9	33	96	0	119	34	25	6	34	1.81
47685000--47685030	16	1.9	16	100	0	62	9	25	19	45	1.81
47690695--47690766	37	1.9	37	97	0	135	29	52	0	18	1.45
47690750--47690787	18	2.2	18	90	4	60	26	50	0	23	1.50
47691169--47691222	19	2.9	18	84	15	67	35	0	1	62	1.06
47691061--47691194	63	2.2	63	82	8	159	26	4	5	63	1.37
47691177--47691220	14	3.1	14	90	3	61	34	0	2	63	1.07
47691667--47691905	126	1.9	126	92	1	408	30	16	15	37	1.90
47693229--47693275	19	2.5	19	86	6	60	25	25	10	38	1.88
47693470--47693514	21	2.1	21	84	8	56	37	24	22	15	1.93
47696077--47696165	12	7.1	13	71	16	55	76	2	20	1	0.96
47696077--47696165	24	3.6	25	79	8	92	76	2	20	1	0.96
47696076--47696154	14	5.8	14	72	20	69	77	1	20	1	0.91
47696090--47696165	16	4.9	16	73	20	56	75	2	21	1	1.00
47697414--47698043	179	3.5	179	91	1	987	30	22	21	24	1.99
47697505--47697969	90	5.2	89	68	14	310	29	23	21	25	1.99
47697426--47697879	89	5.1	89	66	17	285	31	21	21	24	1.98
47697914--47698204	132	2.2	132	95	1	512	28	23	22	25	1.99
47698218--47698524	87	3.5	88	84	5	349	37	20	18	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47698310--47698460	44	3.4	43	73	13	146	37	19	17	24	1.94
47698254--47698472	44	5.0	44	69	16	141	37	19	18	24	1.94
47698477--47698843	85	4.3	86	89	3	546	27	23	28	20	1.99
47699100--47699204	29	3.4	29	75	15	86	31	48	0	19	1.55
47699129--47699198	35	2.0	35	94	0	122	28	51	0	20	1.47
47699182--47699219	18	2.2	18	90	4	60	26	50	0	23	1.50
47699494--47699614	63	1.9	63	83	8	158	25	5	5	62	1.40
47699605--47699634	11	2.6	12	94	5	53	33	0	0	66	0.92
47700088--47700331	126	1.9	126	95	0	443	29	17	15	37	1.91
47701517--47701587	2	35.5	2	100	0	142	50	0	49	0	1.00
47705282--47705369	38	2.3	38	82	9	99	37	37	10	14	1.81
47706746--47706795	8	5.6	9	75	15	50	74	0	2	24	0.93
47706746--47706793	14	3.5	13	80	11	53	75	0	2	22	0.91
47706746--47706795	18	2.7	18	87	3	64	74	0	2	24	0.93
47713197--47713245	5	9.8	5	84	0	62	36	24	2	36	1.67
47715177--47715303	42	3.0	42	76	0	128	26	26	15	30	1.96
47721645--47721696	20	2.6	20	96	0	95	17	32	34	15	1.91
47722952--47723095	42	3.4	42	71	0	108	27	27	16	28	1.97
47723038--47723118	42	1.9	42	82	5	101	34	27	11	27	1.90
47723857--47723882	9	2.9	9	100	0	52	65	23	0	11	1.25
47740541--47740589	25	2.0	25	83	0	62	36	6	14	42	1.70
47747959--47748223	94	2.8	92	84	7	327	29	19	27	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47747959--47748223	46	5.6	47	75	9	243	29	19	27	23	1.98
47752965--47752991	4	6.8	4	100	0	54	22	0	0	77	0.76
47764705--47764877	45	3.9	46	81	7	180	26	27	22	23	1.99
47764870--47765040	38	4.5	38	84	1	200	32	25	20	22	1.98
47765337--47765454	45	2.7	43	84	6	166	27	27	17	27	1.98
47765337--47765471	43	3.1	44	82	6	175	28	28	17	25	1.98
47773434--47773480	15	3.1	14	77	22	51	68	2	2	27	1.13
47773727--47773950	3	70.3	3	67	23	81	59	0	4	34	1.23
47773746--47773785	19	2.2	18	90	4	62	62	2	7	27	1.35
47773759--47773962	44	4.5	46	76	17	155	60	1	2	35	1.21
47773777--47773957	14	11.8	15	74	19	110	60	0	2	36	1.16
47773819--47773969	43	3.4	42	72	14	110	62	1	1	34	1.12
47788097--47788134	15	2.6	15	83	4	51	63	0	2	34	1.09
47788407--47788446	19	2.2	18	90	4	62	62	2	7	27	1.35
47788439--47788606	7	24.9	7	70	19	90	59	0	2	36	1.17
47788438--47788606	50	3.5	47	79	16	147	59	0	2	36	1.17
47788417--47788606	19	9.5	19	70	23	97	60	1	3	35	1.20
47788438--47788613	16	11.4	16	74	20	121	60	0	2	36	1.16
47800943--47801589	48	13.7	48	92	4	1046	35	6	26	31	1.82
47800943--47801914	96	10.4	96	82	8	1170	35	6	27	30	1.83
47801471--47801717	124	2.0	123	91	0	404	34	8	26	30	1.86
47801594--47801914	48	6.7	48	94	0	534	34	7	27	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47805469--47805497	14	2.0	15	93	6	51	20	0	27	51	1.47
47806015--47806044	15	2.0	15	93	0	51	20	0	23	56	1.42
47807389--47807564	46	3.8	46	79	12	207	21	21	28	28	1.98
47807386--47807557	93	1.8	93	94	0	308	21	21	29	27	1.99
47811040--47811085	23	2.0	23	95	0	83	45	4	15	34	1.66
47813124--47813305	94	1.9	94	85	0	247	31	19	12	36	1.89
47813218--47813453	63	3.7	62	71	9	197	32	18	12	36	1.88
47813348--47813489	62	2.3	63	81	7	173	31	19	12	35	1.90
47817419--47817459	20	2.0	21	90	4	66	36	2	14	46	1.58
47817916--47817949	16	2.1	16	88	0	50	44	0	20	35	1.52
47820674--47820787	29	4.0	29	82	6	126	28	29	16	25	1.97
47820665--47820775	58	1.9	58	87	1	161	27	30	17	25	1.97
47820848--47820891	17	2.4	18	85	7	54	15	40	22	20	1.90
47820849--47820891	19	2.4	17	84	7	50	16	41	20	20	1.90
47822245--47822276	16	2.0	16	100	0	64	12	6	31	50	1.65
47828469--47828736	46	5.7	47	79	9	257	24	28	18	28	1.98
47828465--47828737	94	2.9	92	80	13	317	24	28	18	28	1.98
47833586--47833761	46	3.8	46	75	15	164	19	20	30	29	1.97
47833584--47833752	93	1.8	93	89	0	266	20	20	29	28	1.98
47836714--47836793	15	5.4	15	78	12	85	10	16	13	60	1.59
47836705--47836792	30	3.0	30	80	11	92	10	15	15	57	1.64
47853634--47853728	12	7.9	12	72	17	56	40	2	4	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47856136--47856215	32	2.7	29	76	14	72	47	8	2	41	1.48
47862238--47862305	28	2.4	27	82	9	73	64	1	2	30	1.17
47864572--47864607	18	2.1	18	89	5	56	36	8	0	55	1.30
47870427--47870474	25	1.9	25	100	0	96	27	25	25	22	2.00
47870432--47870488	25	2.3	25	87	0	78	26	26	21	26	1.99
47870598--47870677	36	2.2	36	97	2	151	46	16	5	32	1.68
47874954--47875047	33	2.6	37	74	22	92	43	1	4	51	1.28
47874976--47875056	33	2.5	33	82	11	87	46	0	6	46	1.27
47875190--47875234	22	2.2	20	88	8	63	75	2	6	15	1.11
47876296--47876402	45	2.4	45	90	3	162	20	17	19	42	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316