genome.fa.s1.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  137  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43738710--43738825	10	11.8	10	76	11	64	62	2	1	33	1.19
43738710--43738769	20	2.8	20	82	7	75	66	1	1	30	1.11
43738716--43738854	10	14.6	9	71	14	50	61	3	1	33	1.22
43738713--43738769	11	5.4	10	79	12	53	68	1	1	28	1.09
43738759--43738790	17	1.9	16	93	6	55	62	0	3	34	1.11
43738748--43738937	19	9.8	19	67	15	86	61	3	1	33	1.23
43738782--43738853	29	2.5	28	78	10	83	55	5	0	38	1.23
43741736--43741821	46	1.9	45	88	4	129	30	29	19	20	1.97
43744147--43744188	21	2.0	21	86	4	59	47	19	7	26	1.74
43745909--43746157	53	4.8	54	77	14	222	21	25	17	35	1.95
43750431--43750685	55	4.8	53	80	6	259	36	16	25	21	1.94
43750438--43750638	108	1.8	110	89	4	318	33	17	25	22	1.96
43750877--43750907	16	1.9	16	93	0	53	41	0	22	35	1.54
43756455--43756497	19	2.3	19	92	4	70	34	2	0	62	1.08
43756931--43757081	75	2.0	75	85	0	203	34	11	11	43	1.76
43758751--43758780	14	2.1	14	93	0	51	30	16	0	53	1.44
43758751--43758795	21	2.1	21	91	0	72	28	22	0	48	1.50
43764367--43764404	20	1.9	20	88	0	58	15	34	5	44	1.69
43767116--43767278	84	1.9	85	87	3	240	38	14	15	31	1.88
43767630--43767694	18	3.6	18	85	8	78	61	3	30	4	1.31
43767639--43767694	3	18.7	3	81	7	69	62	1	30	5	1.28
43768753--43768799	22	2.1	22	88	4	67	53	14	8	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43770871--43770943	25	3.0	24	83	4	83	34	16	26	23	1.95
43776194--43776371	27	6.6	27	84	3	205	29	28	15	26	1.96
43776215--43776370	82	1.9	81	88	3	233	29	28	15	26	1.96
43781192--43781280	25	3.6	24	81	6	97	33	22	24	19	1.97
43781233--43781287	25	2.2	26	80	9	69	36	18	27	18	1.94
43781176--43781288	50	2.3	49	80	4	129	32	23	25	18	1.97
43782595--43782686	42	2.2	42	92	0	148	29	21	23	25	1.99
43782608--43782696	42	2.1	42	89	0	133	29	19	26	24	1.98
43798711--43798796	28	3.0	28	86	3	118	27	15	29	27	1.96
43811460--43811508	19	2.6	19	83	0	62	48	10	2	38	1.48
43815194--43815287	42	2.3	42	85	5	120	50	14	4	30	1.63
43815823--43815958	68	2.0	68	92	0	227	47	11	12	29	1.76
43817342--43817812	232	2.0	232	96	1	865	40	15	14	30	1.86
43818306--43818335	3	10.0	3	100	0	60	66	0	0	33	0.92
43819051--43819097	18	2.5	19	80	13	62	40	0	0	59	0.97
43819050--43819096	19	2.4	19	80	16	60	40	0	0	59	0.97
43825007--43825061	27	2.0	27	96	0	101	43	3	27	25	1.71
43826601--43826755	75	2.1	75	96	0	283	26	29	19	25	1.98
43832152--43832250	40	2.3	43	85	11	134	30	29	14	26	1.95
43847666--43847697	15	2.0	17	88	11	50	25	0	31	43	1.55
43850157--43850293	23	5.9	23	72	18	97	18	24	20	35	1.95
43852601--43852778	27	6.5	28	82	5	188	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43852602--43852757	82	1.9	81	86	3	224	27	15	27	29	1.96
43852598--43852778	82	2.2	82	82	2	222	27	15	27	29	1.96
43861014--43861068	8	7.2	8	78	17	64	47	0	10	41	1.39
43862849--43862913	27	2.4	27	81	0	76	27	16	16	38	1.91
43862892--43863051	27	5.9	27	91	1	232	30	8	21	39	1.83
43862866--43863051	54	3.5	53	88	2	255	29	9	21	39	1.85
43872549--43872621	26	2.8	26	87	4	94	30	13	20	35	1.91
43872549--43872629	27	3.0	27	83	7	112	30	12	19	37	1.89
43872944--43873009	28	2.4	28	86	0	87	25	33	16	24	1.96
43893893--43893927	11	3.1	11	87	4	52	0	14	0	85	0.59
43893890--43893930	14	2.9	14	86	10	57	0	17	0	82	0.66
43896956--43896989	16	2.2	15	89	5	50	55	0	0	44	0.99
43903496--43903642	48	3.1	47	74	6	134	27	21	19	31	1.97
43907686--43908009	160	2.0	160	90	1	515	32	24	12	30	1.92
43910456--43910680	48	4.7	48	83	0	261	27	23	19	29	1.98
43914362--43914411	24	2.0	25	81	11	59	10	34	2	54	1.45
43915365--43915483	27	4.4	27	83	0	148	35	20	20	24	1.96
43915365--43915479	54	2.1	54	90	1	178	35	19	20	24	1.95
43917123--43917307	79	2.3	82	81	7	220	24	27	22	25	2.00
43917123--43917307	40	4.7	40	82	6	216	24	27	22	25	2.00
43934199--43934344	27	5.4	27	90	0	211	33	19	22	24	1.97
43934503--43934531	10	2.9	10	100	0	58	27	31	10	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43935073--43935134	31	2.0	32	87	3	90	17	24	22	35	1.95
43935097--43935155	27	2.2	27	84	3	75	20	22	20	37	1.95
43937623--43937881	46	5.5	48	76	12	168	29	19	28	23	1.98
43945606--43945710	27	3.9	27	83	1	140	34	16	21	27	1.95
43945703--43945796	27	3.4	27	77	2	98	41	20	9	28	1.83
43945695--43945764	27	2.6	27	86	2	95	44	21	7	27	1.78
43945703--43945767	28	2.4	28	86	2	78	44	21	6	27	1.76
43946064--43946184	41	3.0	41	86	0	179	20	22	31	25	1.98
43946324--43946388	22	3.0	22	75	8	60	20	23	23	33	1.97
43949289--43949412	48	2.6	48	92	2	196	25	16	30	27	1.97
43949289--43949460	48	3.6	48	80	4	177	26	17	29	26	1.98
43952048--43952090	21	2.1	20	83	12	52	51	0	4	44	1.22
43953376--43953406	13	2.4	13	100	0	62	54	19	6	19	1.65
43957473--43957519	23	2.0	23	83	0	58	23	31	8	36	1.85
43973834--43974082	39	6.3	39	93	2	394	24	27	22	25	2.00
43973828--43974135	117	2.6	119	85	8	412	24	27	22	26	2.00
43982122--43982423	39	7.6	39	89	5	398	24	27	22	25	2.00
44001793--44001980	94	2.0	94	94	0	331	42	14	13	29	1.84
44007778--44007950	93	1.9	93	90	0	274	28	30	20	20	1.98
44007771--44007946	46	3.8	45	76	10	167	29	30	19	20	1.97
44007779--44007965	46	4.0	46	72	14	127	29	29	19	20	1.97
44010242--44010310	30	2.3	30	82	7	88	57	17	14	10	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44010242--44010306	15	4.4	15	77	9	71	60	13	15	10	1.60
44013280--44013445	46	3.6	46	75	17	164	28	30	20	20	1.98
44013280--44013465	46	4.0	46	72	15	127	29	30	19	20	1.97
44015702--44015766	13	4.7	15	75	16	52	56	18	15	9	1.65
44015702--44015766	28	2.3	29	78	17	68	56	18	15	9	1.65
44018617--44018790	46	3.8	45	79	8	199	28	29	21	21	1.98
44018625--44018795	93	1.8	92	93	1	297	27	29	21	21	1.98
44020997--44021063	29	2.3	29	80	12	77	58	17	14	8	1.62
44020997--44021063	15	4.7	15	75	14	61	58	17	14	8	1.62
44021032--44021058	14	1.9	14	100	0	54	59	14	14	11	1.62
44023984--44024156	93	1.9	93	93	0	301	27	31	21	20	1.98
44023977--44024152	46	3.8	46	78	10	196	28	30	21	19	1.98
44024028--44024171	46	3.1	44	71	21	116	29	28	20	22	1.98
44026527--44026605	15	5.4	15	77	10	83	59	13	16	10	1.60
44026528--44026614	29	3.0	30	80	12	92	57	16	16	10	1.65
44029553--44029722	93	1.9	90	92	3	286	27	31	20	20	1.98
44045020--44045192	93	1.9	93	92	2	294	27	30	21	20	1.98
44045013--44045188	46	3.8	46	76	12	189	28	30	21	20	1.98
44045021--44045207	46	4.0	46	70	16	136	28	29	20	20	1.98
44048400--44048443	21	2.1	21	91	0	70	52	25	6	15	1.68
44053685--44053762	27	2.9	26	77	5	75	29	25	10	34	1.89
44057144--44057367	46	4.7	50	80	11	185	25	18	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44063203--44063319	47	2.5	47	91	1	182	31	31	17	19	1.95
44069535--44069632	49	2.0	50	89	2	153	29	7	9	54	1.59
44072072--44072103	11	2.8	12	86	13	50	34	0	0	65	0.93
44072226--44072288	30	2.1	30	100	0	126	57	11	3	28	1.49
44073173--44073227	20	2.6	21	80	13	60	32	27	21	18	1.96
44080108--44080169	29	2.2	27	82	5	70	20	20	24	33	1.97
44090224--44090344	43	2.8	43	77	5	136	31	26	15	26	1.96
44092069--44092111	21	2.1	20	83	12	52	18	0	44	37	1.50
44093581--44093746	27	6.1	27	89	0	233	30	16	16	36	1.91
44093741--44093816	27	2.8	26	88	4	89	36	19	22	21	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316