genome.fa.s1.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  113  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35601873--35602044	80	2.2	80	82	3	204	24	20	27	27	1.99
35606242--35606388	44	3.4	43	79	4	152	40	20	17	22	1.92
35608930--35609302	185	2.0	186	87	1	534	24	26	26	23	2.00
35610006--35610190	38	4.9	38	76	6	142	35	27	21	16	1.95
35610003--35610210	76	2.8	76	83	3	242	35	26	21	16	1.94
35610182--35610223	16	2.6	16	84	0	57	38	26	21	14	1.91
35612310--35612342	16	2.1	16	94	0	57	42	36	9	12	1.74
35612632--35612833	43	4.7	43	83	2	210	31	18	24	25	1.97
35612632--35612838	86	2.4	86	80	1	236	30	18	25	25	1.98
35612910--35612975	31	2.1	31	88	0	96	48	21	10	19	1.79
35613231--35613271	21	2.0	21	95	0	73	2	53	14	29	1.54
35613234--35613279	21	2.2	21	88	0	65	6	52	13	28	1.65
35613692--35613720	13	2.1	14	93	6	51	55	10	0	34	1.34
35618497--35618649	9	18.0	9	74	15	96	38	1	15	44	1.55
35618534--35618643	18	6.0	18	76	12	107	40	1	14	43	1.56
35618552--35618663	56	2.0	56	92	0	188	39	1	14	44	1.55
35619083--35619109	5	5.4	5	100	0	54	77	0	0	22	0.76
35618912--35619788	105	8.4	103	87	8	1178	55	3	5	35	1.42
35618903--35619208	111	2.8	110	87	7	459	55	2	5	35	1.38
35619394--35619420	5	5.4	5	100	0	54	77	0	0	22	0.76
35620302--35620342	16	2.8	16	78	17	52	60	19	12	7	1.54
35628182--35628721	27	20.2	27	83	3	583	39	20	9	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35628676--35628767	27	3.4	27	87	0	121	38	16	16	29	1.90
35629225--35629250	11	2.4	11	100	0	52	26	0	19	53	1.45
35642476--35642594	50	2.4	50	92	0	202	35	12	23	28	1.91
35642577--35642663	31	2.8	30	87	6	111	26	17	27	28	1.97
35645022--35645194	43	4.0	43	78	11	174	24	17	25	32	1.96
35645032--35645209	86	2.1	87	78	7	193	24	16	25	33	1.96
35656120--35656215	48	2.0	48	95	0	174	37	6	20	35	1.78
35664682--35664730	25	2.0	25	88	8	73	28	18	22	30	1.97
35664879--35664940	31	2.1	30	82	17	76	45	8	17	29	1.77
35665275--35665334	25	2.4	25	78	10	61	16	11	23	48	1.79
35667746--35667809	30	2.1	30	91	0	101	26	25	12	35	1.91
35678391--35678540	60	2.5	60	93	0	255	28	26	17	28	1.98
35678584--35678627	19	2.2	20	84	4	54	34	25	18	22	1.96
35679855--35679891	16	2.2	17	86	13	51	67	0	27	5	1.12
35698483--35698573	31	3.0	31	80	13	116	43	4	0	51	1.21
35698523--35698579	6	9.0	6	77	11	60	40	1	0	57	1.09
35698497--35698595	29	3.3	29	81	17	105	44	3	0	52	1.16
35700736--35700959	46	4.8	46	78	8	211	27	20	29	22	1.98
35701908--35701963	28	2.0	29	89	3	87	12	23	46	17	1.82
35704156--35704307	27	5.6	27	92	3	232	27	13	28	30	1.94
35704156--35704307	55	2.8	55	92	0	241	27	13	28	30	1.94
35721134--35721207	34	2.2	34	81	13	93	28	20	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35728870--35728955	34	2.5	34	78	10	104	25	19	25	29	1.99
35737082--35737121	20	2.0	20	95	0	71	25	25	27	22	2.00
35739264--35739290	13	2.1	13	100	0	54	14	33	37	14	1.88
35760600--35760822	40	5.6	40	86	3	236	24	21	27	26	1.99
35760675--35760857	79	2.3	80	82	1	226	25	20	27	25	1.99
35768461--35768685	40	5.7	40	84	4	231	24	21	27	26	1.99
35768514--35768683	40	4.3	40	90	0	234	24	21	28	26	1.99
35768536--35768718	79	2.3	80	82	1	226	25	20	27	25	1.99
35785300--35785477	27	6.6	27	83	3	205	26	15	28	29	1.96
35785301--35785456	82	1.9	81	88	3	233	26	15	28	29	1.96
35785297--35785477	82	2.2	81	83	2	229	27	15	27	29	1.96
35790911--35790958	25	1.9	25	95	0	87	43	18	8	29	1.79
35793136--35793193	6	10.0	6	83	10	68	65	3	1	29	1.19
35793157--35793195	19	2.1	19	100	0	78	64	0	5	30	1.15
35793157--35793221	25	2.6	25	78	11	69	64	1	7	26	1.29
35794505--35794579	34	2.2	33	85	2	105	26	21	22	29	1.99
35797578--35797709	51	2.6	51	84	4	160	28	28	16	27	1.97
35797728--35797859	52	2.6	51	81	2	167	33	27	15	24	1.95
35800428--35800474	25	1.9	25	86	4	69	31	19	17	31	1.94
35807836--35807867	16	2.0	17	88	11	50	0	25	3	71	1.00
35811452--35814100	991	2.7	990	99	0	5230	29	15	16	38	1.90
35826657--35826687	15	2.1	15	93	0	53	22	22	12	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35828076--35828116	17	2.3	18	80	16	50	39	4	0	56	1.21
35828202--35828260	10	5.5	11	71	28	56	47	0	1	50	1.11
35828217--35828261	15	2.8	17	76	10	58	48	0	0	51	1.00
35829952--35830028	6	12.3	6	71	15	50	75	5	18	1	1.06
35829952--35830028	25	3.1	25	74	10	77	75	5	18	1	1.06
35830940--35831026	41	2.2	40	93	2	147	27	17	21	33	1.96
35832203--35832523	46	7.0	46	89	2	450	21	24	14	39	1.90
35834618--35834646	8	3.6	8	100	0	58	75	0	0	24	0.80
35836943--35836993	26	1.9	27	88	11	79	21	9	13	54	1.67
35845588--35845630	22	2.0	22	95	0	77	30	6	34	27	1.83
35846954--35847037	23	3.5	23	77	8	71	25	19	19	36	1.94
35850458--35850548	46	2.0	46	86	0	128	37	27	15	19	1.92
35855923--35856072	41	3.7	41	79	1	185	22	22	26	29	1.99
35864024--35864173	41	3.7	41	80	3	187	22	22	26	29	1.99
35867507--35867585	38	2.1	38	100	0	158	37	25	7	29	1.83
35867938--35867970	16	2.1	16	100	0	66	36	27	0	36	1.57
35873860--35873987	28	4.5	28	88	2	175	28	12	25	32	1.92
35873860--35873987	57	2.2	57	88	2	186	28	12	25	32	1.92
35881065--35881132	33	2.1	33	100	0	136	41	16	8	33	1.79
35881848--35882018	93	1.8	93	93	0	297	28	28	20	22	1.99
35881843--35882015	46	3.7	46	78	10	199	29	27	20	23	1.99
35890603--35890686	42	2.0	42	97	0	159	16	25	9	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35892802--35892942	27	5.2	27	80	10	146	19	22	22	34	1.96
35892799--35892942	54	2.7	54	90	2	218	19	22	22	34	1.96
35892896--35892957	27	2.3	26	80	5	70	24	19	19	37	1.94
35898767--35898907	27	5.2	27	78	13	148	20	24	21	34	1.97
35898764--35898907	54	2.7	54	91	4	220	20	24	21	34	1.97
35900566--35900678	43	2.9	37	76	14	127	46	12	15	25	1.80
35903806--35903839	17	2.0	17	88	11	52	11	29	41	17	1.85
35909888--35910028	48	2.9	48	81	4	140	34	27	15	21	1.94
35914554--35914618	22	3.0	22	75	8	62	26	20	21	32	1.97
35918390--35918579	96	2.0	96	96	0	353	25	15	31	28	1.96
35919094--35919119	13	2.0	13	100	0	52	15	23	38	23	1.92
35922662--35922839	27	6.6	27	83	5	180	29	28	15	26	1.96
35922683--35922838	82	1.9	81	86	3	224	28	28	16	26	1.97
35926530--35926652	55	2.2	55	79	2	149	24	27	27	20	1.99
35932039--35932162	46	2.6	47	82	7	133	27	22	13	36	1.92
35940240--35940301	28	2.3	27	77	2	70	19	24	25	30	1.98
35941815--35941841	13	2.1	13	100	0	54	14	33	37	14	1.88
35960349--35960401	20	2.8	18	75	13	52	16	35	15	32	1.90
35966367--35966427	24	2.6	24	84	7	72	65	8	0	26	1.20
35968668--35968739	35	2.1	35	100	0	144	26	16	16	40	1.90
35970763--35970883	46	2.6	46	85	7	147	27	19	28	23	1.99
35970906--35971080	49	3.6	49	81	6	205	26	18	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35977834--35977870	13	2.5	15	87	12	51	51	5	0	43	1.24
35978337--35978368	13	2.3	15	89	10	50	40	0	0	59	0.97
35978350--35978398	24	2.0	24	84	11	64	40	0	4	55	1.19
35980220--35980282	24	2.7	23	87	5	90	26	14	25	33	1.94
35980848--35980910	30	2.1	30	96	0	117	26	3	12	57	1.51
35980993--35981031	18	2.2	18	86	9	53	20	0	12	66	1.24
35982563--35982601	15	2.4	17	87	12	55	76	2	12	7	1.09
35985548--35985704	43	3.7	42	77	10	158	23	18	26	31	1.97
35985542--35985704	86	1.9	86	83	6	197	23	18	26	31	1.97
35986680--35986730	20	2.7	19	82	14	54	41	0	21	37	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316