genome.fa.s1.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  165  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52522777--52522805	15	1.9	15	100	0	58	48	3	13	34	1.60
52535891--52535918	7	4.0	7	100	0	56	14	0	0	85	0.59
52535912--52535946	16	2.2	16	90	10	54	28	11	8	51	1.67
52536457--52536510	15	3.5	15	92	2	90	12	5	18	62	1.48
52536456--52536511	16	3.6	16	87	4	87	12	5	17	64	1.45
52536719--52536819	29	3.4	28	73	10	76	42	2	19	34	1.67
52536732--52536819	31	3.0	29	73	8	79	43	3	21	31	1.69
52537076--52537828	72	10.1	72	87	6	878	33	17	16	32	1.93
52537377--52537821	230	1.9	229	93	1	766	33	17	16	31	1.93
52548545--52548597	14	3.6	14	76	14	52	9	1	16	71	1.21
52548557--52548594	15	2.5	15	86	0	58	13	2	15	68	1.32
52548810--52548910	31	3.4	29	78	8	105	41	0	21	35	1.60
52555348--52555567	47	4.7	47	77	11	175	23	30	16	28	1.96
52555389--52555568	94	1.9	93	85	3	245	24	31	15	28	1.96
52558849--52558906	28	2.0	30	86	6	84	58	10	3	27	1.47
52558887--52558915	12	2.5	12	94	5	51	68	0	0	31	0.89
52558939--52558981	22	2.0	22	85	0	59	58	9	11	20	1.61
52558946--52558986	11	3.7	11	80	0	55	56	7	14	21	1.63
52561177--52561242	13	5.1	13	81	7	89	37	24	7	30	1.83
52561164--52561242	39	2.0	39	85	4	106	40	22	6	30	1.79
52563750--52564526	48	16.1	48	95	1	1374	36	6	26	31	1.81
52564675--52564781	37	2.9	37	95	0	187	23	18	31	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52567176--52567230	24	2.3	24	83	0	74	49	21	1	27	1.60
52569129--52569195	18	3.6	18	78	6	62	73	4	4	17	1.18
52569136--52569176	19	2.1	20	86	4	57	70	7	2	19	1.22
52574385--52574423	19	2.0	20	90	5	62	25	10	20	43	1.83
52577554--52578050	47	10.4	47	92	2	780	33	8	29	29	1.86
52577554--52578050	189	2.6	188	92	4	818	33	8	29	29	1.86
52580186--52580260	38	2.0	38	86	5	107	30	18	26	24	1.98
52580318--52580713	40	9.9	40	91	0	605	25	21	27	25	2.00
52583976--52584423	47	9.4	47	91	1	707	32	8	29	29	1.86
52583976--52584423	96	4.7	94	92	1	707	32	8	29	29	1.86
52583976--52584423	143	3.1	141	92	1	716	32	8	29	29	1.86
52588590--52588871	48	5.9	48	83	1	210	24	23	19	32	1.98
52588589--52588872	96	2.9	96	79	4	313	24	23	20	32	1.98
52588641--52588872	96	2.4	96	83	2	315	25	22	19	32	1.98
52594767--52595215	47	9.6	47	92	3	710	33	7	30	29	1.85
52596629--52596860	40	5.8	40	91	2	349	23	21	28	26	1.99
52600887--52601195	47	6.6	47	95	0	501	33	8	29	28	1.86
52606167--52606286	43	2.9	41	76	13	118	24	20	27	28	1.99
52615263--52615292	14	2.1	14	100	0	60	43	0	13	43	1.43
52618185--52618309	49	2.5	49	85	1	160	22	28	20	28	1.99
52618185--52618362	97	1.8	99	83	7	238	23	27	20	28	1.99
52618231--52618499	143	1.9	140	78	8	294	24	27	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52621645--52621867	79	2.8	79	83	9	260	24	27	22	25	2.00
52621645--52621867	39	5.7	40	85	8	257	24	27	22	25	2.00
52628012--52628081	28	2.5	28	92	0	113	20	47	15	17	1.83
52629046--52629170	49	2.5	49	80	3	135	24	28	19	28	1.98
52629046--52629225	97	1.8	98	82	4	229	23	27	18	30	1.98
52634068--52634201	42	3.1	42	80	9	146	34	26	16	22	1.95
52634037--52634201	86	1.9	85	81	8	201	31	26	18	23	1.97
52634570--52634601	8	4.0	8	95	0	55	34	12	0	53	1.39
52643846--52644461	81	7.6	81	81	5	629	31	9	19	38	1.85
52643846--52644461	27	22.9	27	83	2	553	31	9	19	38	1.85
52644982--52645023	22	1.9	22	100	0	84	28	35	16	19	1.93
52658192--52658244	8	6.6	8	84	0	70	49	18	24	7	1.74
52658199--52658250	16	3.2	16	88	0	77	50	17	25	7	1.72
52658474--52658548	29	2.7	29	87	4	100	25	16	30	28	1.96
52658474--52658557	29	3.0	28	82	6	98	27	14	29	28	1.95
52664697--52664730	8	4.2	8	84	0	50	52	32	2	11	1.53
52665991--52666089	29	3.5	28	78	6	92	32	13	26	28	1.93
52669936--52669977	19	2.2	19	100	0	84	35	28	14	21	1.92
52672482--52672519	15	2.5	15	87	8	51	60	5	2	31	1.33
52673741--52673810	25	2.8	25	91	4	106	25	22	24	27	2.00
52674042--52674177	27	5.0	27	91	0	200	27	21	17	33	1.96
52674162--52674288	27	4.8	27	82	4	134	27	10	21	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52674162--52674314	54	2.9	54	80	5	134	30	10	20	39	1.86
52674193--52674315	27	4.6	27	80	2	113	30	9	19	40	1.84
52678974--52679042	23	2.9	24	74	8	70	21	23	20	34	1.96
52679218--52679294	19	4.0	19	71	8	57	37	6	15	40	1.73
52682815--52682848	14	2.4	14	90	0	50	23	5	14	55	1.61
52685074--52685104	14	2.2	14	94	0	53	9	25	32	32	1.88
52702943--52703164	80	2.8	78	85	6	284	25	22	26	25	2.00
52702947--52703131	40	4.6	40	93	1	300	22	22	28	26	1.99
52705983--52706042	31	1.9	31	83	6	77	61	1	0	36	1.06
52705983--52706082	38	2.9	33	77	18	82	62	3	2	33	1.22
52708839--52708887	19	2.6	19	86	0	62	22	18	14	44	1.85
52709628--52709676	19	2.5	19	86	3	62	71	2	24	2	1.07
52709628--52709682	6	8.7	7	75	18	50	70	1	25	1	1.06
52709625--52709682	12	4.7	12	79	14	64	72	1	24	1	1.03
52709638--52709706	6	11.5	6	83	13	54	62	1	33	2	1.19
52711852--52711977	60	2.1	60	83	7	157	36	15	7	39	1.77
52714458--52714678	40	5.6	40	74	5	182	24	25	23	26	2.00
52716943--52717019	40	1.9	40	91	0	127	14	14	35	36	1.86
52717300--52717353	18	3.3	18	66	28	57	24	50	7	18	1.72
52717290--52717386	30	3.2	30	95	0	167	25	49	7	17	1.72
52717546--52717581	16	2.2	16	90	0	54	27	5	27	38	1.79
52717868--52717997	25	5.5	23	73	10	86	34	6	3	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52718149--52718204	25	2.3	24	79	14	62	37	16	3	42	1.65
52719713--52719953	125	1.9	125	87	3	351	38	9	12	39	1.75
52720024--52720049	13	2.0	13	100	0	52	76	7	0	15	0.99
52729155--52729222	34	2.0	34	100	0	136	23	26	14	35	1.94
52734387--52734617	50	4.7	49	80	4	284	29	26	17	25	1.98
52734387--52734617	99	2.3	99	85	3	304	29	26	17	25	1.98
52734864--52734917	27	2.0	27	85	0	72	38	14	7	38	1.75
52739310--52739571	47	5.5	48	74	16	176	28	17	29	24	1.97
52739307--52739478	94	1.8	94	86	5	249	30	17	28	23	1.97
52739449--52739571	49	2.6	46	87	5	156	25	17	31	25	1.97
52740598--52740691	40	2.4	40	82	3	111	37	37	10	14	1.81
52743763--52743827	33	2.0	33	100	0	130	52	3	15	29	1.58
52744277--52744420	71	2.0	70	92	4	236	50	2	3	44	1.30
52754228--52754253	13	2.0	13	100	0	52	15	23	30	30	1.95
52754904--52754928	13	1.9	13	100	0	50	80	0	8	12	0.92
52761621--52761663	6	6.7	6	80	15	50	11	2	2	83	0.83
52761621--52761649	15	1.9	15	100	0	58	13	0	3	82	0.79
52766015--52766124	55	2.0	55	96	0	202	26	17	19	37	1.93
52767533--52767571	19	2.1	19	95	0	69	35	7	0	56	1.28
52770725--52770805	26	3.1	26	98	0	153	33	7	24	34	1.83
52772389--52772533	54	2.7	54	90	2	220	20	24	22	33	1.97
52772393--52772533	27	5.2	27	80	10	155	20	24	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52772393--52772550	81	2.0	80	83	8	205	21	24	20	33	1.97
52778710--52778788	26	3.1	26	96	1	142	32	7	24	35	1.83
52780384--52780470	27	3.2	27	82	9	115	17	21	24	36	1.94
52785146--52785323	27	6.6	27	83	3	205	26	15	28	29	1.96
52785147--52785302	82	1.9	81	88	3	233	26	15	28	29	1.96
52785143--52785323	82	2.2	81	83	2	229	27	15	27	29	1.96
52794536--52794579	22	2.0	21	82	8	52	68	11	13	6	1.39
52794569--52794597	6	4.8	6	100	0	58	86	0	0	13	0.58
52795173--52795208	18	1.9	19	88	5	56	83	2	8	5	0.89
52795172--52795216	19	2.4	19	81	7	56	82	2	6	8	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316