genome.fa.s1.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  176  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56728203--56728453	51	4.9	51	90	0	360	32	13	25	28	1.93
56737698--56737793	42	2.3	42	83	8	115	30	27	16	26	1.97
56737741--56738017	48	5.8	48	86	1	367	29	25	17	27	1.98
56739201--56739259	30	2.0	30	86	0	82	38	3	28	28	1.73
56739596--56739850	55	4.8	54	79	7	247	35	18	24	21	1.95
56741509--56742058	47	11.6	47	92	2	886	29	28	8	33	1.86
56741509--56742058	143	3.9	143	92	3	905	29	28	8	33	1.86
56750649--56750751	43	2.3	44	83	14	147	27	17	30	25	1.97
56750656--56750784	43	3.0	43	85	1	143	27	19	29	23	1.98
56752530--56752657	39	3.3	39	83	0	166	21	25	20	32	1.97
56764192--56764443	40	6.4	40	84	8	306	25	28	22	23	2.00
56764193--56764406	77	2.7	79	89	5	328	26	27	22	23	2.00
56764192--56764445	117	2.1	121	88	9	391	25	27	22	23	2.00
56764755--56764826	27	2.6	29	86	4	103	26	30	16	26	1.97
56764810--56764906	40	2.3	41	92	7	169	27	34	15	22	1.94
56766751--56766828	36	2.1	37	86	6	106	25	29	19	25	1.98
56766947--56767193	49	5.3	47	86	7	333	29	30	8	31	1.87
56766947--56767193	95	2.6	95	87	5	335	29	30	8	31	1.87
56784744--56784977	102	2.3	101	82	2	263	26	28	19	26	1.99
56784784--56785026	51	4.8	50	78	3	227	28	26	17	26	1.98
56784791--56784975	101	1.8	102	84	3	257	27	27	18	25	1.98
56789037--56789284	55	4.7	53	80	7	222	21	25	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56789084--56789284	108	1.8	110	88	4	309	22	25	16	34	1.95
56790553--56790637	42	2.0	42	86	8	120	30	23	16	29	1.96
56790598--56790868	48	5.8	48	79	6	286	29	25	18	26	1.98
56790694--56790827	42	3.0	42	88	6	169	25	24	22	27	2.00
56790597--56790867	138	2.0	138	83	2	348	28	25	19	26	1.98
56790850--56790932	37	2.2	37	85	4	105	25	27	18	28	1.98
56796341--56796374	17	2.0	17	94	0	59	38	23	14	23	1.92
56796410--56796579	27	6.3	27	74	9	123	31	14	17	37	1.89
56796448--56796684	27	8.7	27	77	5	201	31	12	19	36	1.90
56796490--56796684	54	3.6	54	84	4	239	31	12	20	36	1.89
56796452--56796684	82	2.9	81	84	3	272	30	12	19	36	1.89
56796960--56797057	29	3.4	29	91	2	153	19	33	16	30	1.94
56796959--56797096	28	4.9	28	90	0	150	24	34	15	26	1.95
56800032--56800148	27	4.3	26	80	8	74	28	11	18	41	1.86
56800060--56800283	54	4.2	53	81	10	163	31	10	18	39	1.84
56800100--56800364	27	9.8	27	80	10	265	30	9	20	38	1.85
56800321--56800403	43	1.9	43	87	0	121	26	14	18	40	1.88
56803114--56803163	19	2.6	19	81	6	57	32	0	28	40	1.57
56805072--56805293	40	5.6	40	90	1	331	27	25	22	24	2.00
56805072--56805293	80	2.8	80	93	0	365	27	25	22	24	2.00
56806979--56807021	14	3.1	14	80	6	52	58	9	2	30	1.42
56806979--56807017	13	2.9	13	84	3	51	58	10	2	28	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56817767--56817835	15	4.7	15	79	15	81	60	15	13	10	1.58
56817777--56817851	15	4.9	16	76	15	61	62	16	10	10	1.53
56820855--56821048	50	3.9	49	78	10	198	27	28	18	25	1.98
56820866--56821052	101	1.9	99	84	8	254	28	28	17	25	1.98
56829387--56829510	27	4.7	26	75	12	99	39	23	8	28	1.84
56829408--56829539	27	4.9	26	79	9	122	38	22	9	29	1.85
56829379--56829555	54	3.3	54	77	7	153	40	22	8	28	1.83
56829533--56829725	27	7.2	27	81	5	203	32	22	5	39	1.76
56829533--56829725	54	3.6	54	85	3	230	32	22	5	39	1.76
56830188--56830250	6	10.3	6	74	16	58	17	19	14	49	1.80
56830163--56830229	25	2.7	25	92	0	107	19	23	11	44	1.84
56830132--56830229	31	3.4	30	73	16	98	20	21	12	45	1.83
56837193--56837270	21	3.7	21	74	19	65	28	24	32	15	1.95
56840274--56840436	85	1.9	85	83	5	213	27	18	24	29	1.98
56850215--56850246	16	2.1	15	94	5	55	50	28	18	3	1.62
56850494--56850586	28	3.3	28	92	3	152	34	26	7	31	1.84
56850691--56850780	28	3.2	27	82	7	110	20	23	23	33	1.97
56851244--56851282	19	2.1	19	85	0	51	15	5	7	71	1.26
56859783--56859820	12	2.8	13	85	14	51	36	5	39	18	1.73
56861392--56861469	31	2.5	31	93	2	131	33	17	25	23	1.96
56873519--56873604	28	3.0	28	79	3	91	26	30	13	29	1.95
56878006--56878116	58	1.9	58	85	1	152	27	30	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56878009--56878116	29	3.8	29	82	6	121	26	29	16	26	1.97
56883411--56883470	27	2.3	26	85	2	75	36	21	21	20	1.95
56883509--56883560	27	2.0	26	84	3	68	34	21	26	17	1.95
56886293--56886375	27	3.0	28	82	5	89	39	20	18	21	1.92
56890217--56890407	45	4.3	45	86	2	242	23	22	28	26	1.99
56890218--56890422	90	2.3	90	87	3	281	22	22	28	25	1.99
56892500--56892621	22	5.3	22	62	21	61	25	29	11	33	1.91
56892472--56892775	47	6.4	47	91	3	425	26	30	9	32	1.88
56901627--56901869	47	5.1	49	87	5	329	30	9	31	27	1.88
56901627--56901869	96	2.5	96	91	1	371	30	9	31	27	1.88
56901988--56902066	37	2.1	37	90	0	122	24	18	31	25	1.98
56903436--56903639	50	4.1	50	81	3	250	30	25	18	25	1.98
56905921--56905959	15	2.5	15	91	4	60	56	15	12	15	1.68
56914582--56914756	45	4.0	45	87	3	223	23	21	28	26	1.99
56915495--56915577	34	2.4	35	85	2	114	27	20	24	27	1.99
56920740--56920887	22	6.5	23	85	4	185	25	21	18	35	1.96
56935418--56935539	22	5.3	22	62	21	61	25	29	11	33	1.91
56935390--56935821	47	8.9	47	81	9	494	27	31	9	31	1.88
56935534--56935614	25	3.4	25	65	22	73	32	32	7	28	1.85
56935552--56935669	58	2.0	58	100	0	236	29	33	8	28	1.87
56935406--56935821	96	4.3	96	88	7	588	27	31	9	31	1.89
56935457--56935767	152	2.0	150	89	3	487	27	31	9	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56935504--56935816	105	3.1	103	87	9	478	27	31	9	31	1.88
56939180--56939500	40	8.1	40	90	0	482	24	28	22	24	2.00
56939554--56939628	38	2.0	38	86	5	107	24	26	18	30	1.98
56942086--56942207	22	5.3	22	62	21	61	25	29	11	33	1.91
56942058--56942335	47	5.9	47	92	2	400	26	30	9	32	1.89
56946140--56946345	40	5.2	40	91	0	324	29	26	21	22	1.99
56956359--56956409	20	2.5	21	73	20	54	35	15	13	35	1.87
56962780--56963191	54	7.8	54	76	11	352	24	23	15	36	1.94
56962792--56963238	209	2.1	209	93	0	761	24	23	15	36	1.94
56966425--56966631	67	3.2	64	79	9	222	30	17	29	21	1.96
56969854--56969925	27	2.7	27	82	0	90	29	11	22	37	1.88
56970215--56970305	29	3.2	29	84	6	116	28	31	14	25	1.94
56971284--56971310	4	6.8	4	100	0	54	77	0	0	22	0.76
56973851--56973987	27	5.1	27	70	1	87	37	20	9	32	1.85
56973969--56974028	27	2.2	27	90	0	93	41	11	13	33	1.80
56974796--56974862	32	2.1	32	81	10	75	13	20	25	40	1.89
56974808--56974872	32	2.0	33	88	5	98	13	16	26	43	1.86
56979111--56979237	39	3.3	39	87	3	168	35	7	11	45	1.69
56986887--56987080	47	4.1	47	91	0	298	32	10	29	26	1.90
56986916--56986987	22	3.1	22	64	24	58	33	13	29	23	1.93
56986961--56987036	23	3.2	25	62	24	63	28	13	34	23	1.92
56987050--56987232	48	3.8	48	96	0	339	36	6	26	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56987379--56987523	37	3.9	37	93	0	236	24	19	30	26	1.98
56999776--56999838	26	2.4	26	83	2	72	15	23	4	55	1.59
56999844--56999887	15	3.0	14	77	9	52	2	18	2	77	0.98
57001845--57001970	46	2.7	46	83	4	146	27	8	14	49	1.72
57001845--57001999	47	3.3	46	78	5	150	29	9	14	47	1.75
57009336--57009387	21	2.5	21	96	0	95	46	11	15	26	1.80
57013309--57013434	42	2.9	43	79	12	116	23	19	24	32	1.97
57019271--57019498	40	5.7	40	96	0	411	30	20	27	21	1.98
57037269--57037451	40	4.6	40	83	6	221	25	27	22	24	2.00
57037271--57037451	79	2.3	80	82	7	217	24	27	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316