genome.fa.s7.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  102  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30192821--30192916	42	2.3	42	89	3	140	41	11	13	33	1.80
30199925--30199956	9	3.7	9	91	8	57	12	9	0	78	0.97
30199953--30199991	5	7.6	5	83	16	53	41	0	0	58	0.98
30205587--30205633	20	2.3	20	92	7	78	36	10	19	34	1.86
30205683--30205755	26	2.8	26	87	0	101	28	23	21	26	1.99
30216735--30216778	6	7.2	6	92	2	52	15	25	0	59	1.37
30216736--30216778	12	3.5	12	87	3	59	16	25	0	58	1.38
30216735--30216777	18	2.3	19	88	4	61	16	25	0	58	1.38
30219280--30219306	8	3.4	8	100	0	54	40	0	11	48	1.39
30220174--30220323	43	3.5	43	75	8	153	29	15	23	32	1.95
30221725--30221791	31	2.2	31	88	0	98	23	25	11	38	1.89
30221984--30222080	25	4.0	24	86	9	135	29	21	20	27	1.98
30222005--30222078	23	3.1	23	94	3	121	31	20	20	28	1.97
30222129--30222189	20	3.0	20	95	0	113	34	19	11	34	1.88
30222129--30222184	11	5.5	11	71	16	57	32	19	12	35	1.89
30228995--30229019	13	1.9	13	100	0	50	20	0	8	72	1.10
30229753--30229832	31	2.5	31	89	2	115	23	26	16	33	1.95
30230037--30230110	23	3.2	23	96	0	139	28	21	20	29	1.98
30230161--30230227	20	3.3	20	91	0	107	32	22	11	32	1.90
30230264--30230311	25	1.9	25	91	0	78	25	14	25	35	1.94
30240142--30240295	42	3.7	41	82	3	173	29	24	16	29	1.97
30249597--30249679	41	2.0	41	95	0	148	32	15	24	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30253514--30253738	48	4.8	47	77	14	193	27	17	30	24	1.97
30253514--30253735	92	2.4	93	82	10	249	27	18	31	23	1.97
30280048--30280351	45	6.7	47	75	7	247	27	20	28	23	1.99
30280093--30280392	45	6.6	45	76	10	259	27	19	29	23	1.98
30280004--30280351	91	3.8	90	84	5	432	27	20	27	24	1.99
30280004--30280351	182	1.9	183	86	1	493	27	20	27	24	1.99
30280004--30280392	91	4.2	89	82	6	408	27	19	28	24	1.98
30280004--30280392	46	8.5	45	71	11	209	27	19	28	24	1.98
30283438--30283562	53	2.4	53	88	7	177	52	10	22	15	1.73
30284695--30284918	40	5.6	40	94	2	380	23	23	27	25	2.00
30286469--30286640	93	1.8	93	93	2	301	29	29	20	20	1.98
30286462--30286637	46	3.8	47	79	12	211	30	29	19	20	1.97
30289856--30290038	79	2.3	81	84	7	232	24	22	27	25	2.00
30289856--30290038	40	4.6	40	83	9	214	24	22	27	25	2.00
30289907--30290071	79	2.1	79	84	6	210	26	21	27	25	1.99
30297791--30297974	40	4.6	41	83	11	206	24	22	27	25	2.00
30297791--30297974	79	2.3	80	84	6	223	24	22	27	25	2.00
30297844--30298007	79	2.1	78	84	5	206	26	20	27	25	1.99
30297804--30298007	39	5.2	40	78	10	163	26	21	26	25	1.99
30304939--30305065	47	2.7	47	83	4	139	25	22	27	24	2.00
30322622--30322649	4	7.0	4	100	0	56	25	0	0	75	0.81
30323680--30323763	42	2.0	42	90	2	132	23	34	20	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30323680--30323814	43	3.3	43	71	17	135	24	33	19	22	1.97
30323955--30324001	19	2.5	19	76	10	51	70	6	2	21	1.20
30330740--30330796	25	2.3	25	82	11	64	38	1	1	57	1.19
30330759--30330814	25	2.4	24	85	8	71	35	0	5	58	1.21
30333852--30334029	41	4.4	41	87	2	234	20	21	21	35	1.96
30333852--30334060	82	2.6	81	83	6	217	21	20	21	37	1.95
30333891--30334060	41	4.2	40	81	7	148	20	19	21	38	1.93
30336674--30336719	7	7.0	7	85	9	62	10	0	2	86	0.64
30338871--30338917	26	2.0	25	84	16	64	68	2	6	23	1.24
30340937--30340996	26	2.3	26	88	0	84	21	6	3	68	1.28
30343015--30343173	27	5.9	26	81	7	140	35	20	23	20	1.96
30343057--30343177	54	2.2	54	95	0	215	35	23	23	17	1.95
30345824--30345915	40	2.3	40	81	3	105	25	16	26	32	1.96
30347820--30347860	17	2.3	19	87	8	59	80	0	12	7	0.90
30361171--30361226	18	3.5	15	81	18	60	37	10	16	35	1.83
30361169--30361247	35	2.2	37	86	13	121	37	10	16	35	1.82
30361169--30361240	19	3.9	19	89	10	123	37	11	15	36	1.83
30361219--30361263	23	2.0	22	82	4	54	42	4	17	35	1.70
30369600--30369684	44	2.0	43	83	2	107	38	20	18	22	1.93
30369643--30370247	78	7.8	78	86	1	809	33	19	22	24	1.97
30370409--30370703	78	3.8	78	87	1	421	31	18	24	25	1.98
30370645--30370849	45	4.5	44	76	8	207	30	16	26	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30371139--30371236	35	2.7	37	87	12	150	37	10	16	35	1.82
30371139--30371229	19	4.9	19	92	8	161	37	10	15	36	1.83
30371139--30371252	19	5.8	22	87	10	96	36	9	15	37	1.81
30371520--30371554	18	2.0	17	88	5	52	31	0	0	68	0.90
30374424--30374459	12	2.8	14	76	24	51	55	0	5	38	1.23
30388441--30388474	10	3.4	10	87	0	50	14	52	5	26	1.64
30399548--30399763	96	2.2	96	89	1	317	28	28	17	25	1.97
30399549--30399881	48	7.0	48	75	4	287	27	29	16	27	1.97
30406150--30406232	17	4.9	17	74	0	67	34	7	16	40	1.76
30406238--30406301	17	3.8	17	74	0	56	29	6	10	53	1.60
30409643--30409702	30	2.0	30	100	0	120	33	6	6	53	1.53
30411562--30411622	21	3.0	21	87	2	88	26	22	39	11	1.88
30412826--30413056	48	4.8	48	81	2	239	26	30	18	25	1.98
30412812--30413043	96	2.4	96	84	2	295	26	29	17	26	1.98
30414771--30414808	19	2.0	19	85	10	51	55	21	2	21	1.56
30416319--30416636	100	3.2	100	79	6	304	30	21	14	33	1.93
30420622--30420864	50	4.8	51	75	7	201	32	23	17	26	1.97
30420730--30420862	52	2.6	50	80	2	149	34	25	14	25	1.94
30420634--30420864	101	2.3	100	81	2	257	32	23	17	25	1.96
30430584--30430628	20	2.1	22	88	8	67	73	4	0	22	1.01
30448325--30448364	17	2.2	19	86	8	57	27	0	2	70	1.01
30450793--30450855	31	2.0	31	84	0	81	28	25	7	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30456183--30456353	93	1.8	93	94	2	308	28	28	21	22	1.99
30456175--30456350	46	3.8	46	78	14	209	28	27	21	22	1.99
30463024--30463073	26	1.9	26	95	0	91	32	28	18	22	1.97
30466328--30466392	29	2.2	29	94	0	112	18	32	29	20	1.96
30471800--30471840	20	2.0	20	90	4	64	17	2	9	70	1.25
30474365--30474531	86	1.9	86	92	0	280	41	4	15	38	1.67
30475927--30475952	2	13.0	2	100	0	52	50	50	0	0	1.00
30476236--30476294	30	1.9	31	82	3	75	45	23	0	30	1.53
30477185--30477281	3	32.3	3	100	0	194	0	32	0	67	0.91
30477802--30477847	21	2.2	21	84	0	56	58	21	10	8	1.58
30492359--30492652	153	1.9	150	87	8	436	41	4	10	43	1.60
30494308--30494367	17	3.6	16	77	22	54	60	0	3	36	1.14
30494678--30494718	17	2.4	18	76	15	52	58	0	4	36	1.20
30506169--30506299	39	3.4	39	89	0	190	29	20	26	23	1.99
30506171--30506326	78	2.0	77	82	3	188	29	21	26	22	1.99
30509657--30509724	35	1.9	35	84	0	91	25	22	11	41	1.87
30511266--30511639	187	2.0	187	98	0	721	35	22	6	35	1.80
30511750--30511908	43	3.7	43	77	7	155	28	27	18	25	1.98
30511750--30511919	86	2.0	85	84	7	220	30	27	17	25	1.97
30514131--30514246	43	2.7	43	80	6	146	27	23	18	31	1.97
30514265--30514361	40	2.4	41	85	1	133	32	26	15	24	1.95
30516963--30517010	20	2.2	22	75	21	55	52	0	2	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30516972--30517016	20	2.2	21	92	4	74	53	2	2	42	1.25
30519918--30519971	27	2.0	27	100	0	108	51	18	7	22	1.70
30521074--30521150	39	2.0	39	84	0	100	45	12	5	36	1.65
30521139--30521186	20	2.4	20	86	6	62	54	16	0	29	1.43
30521100--30521195	19	4.9	18	74	13	75	50	12	2	35	1.52
30521184--30521231	25	2.0	24	83	4	60	50	8	8	33	1.63
30521277--30521339	28	2.2	28	82	0	72	68	4	7	19	1.33
30521698--30521743	21	2.2	21	84	0	56	36	32	6	23	1.81
30521703--30521756	27	2.0	28	89	10	85	37	31	7	24	1.83
30526756--30527177	114	3.8	110	81	8	367	27	2	14	55	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295