genome.fa.s7.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  118  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35407825--35407871	24	2.0	24	91	0	76	59	0	4	36	1.17
35407845--35407888	21	2.0	22	86	4	63	59	2	2	36	1.23
35407918--35407966	24	2.0	24	84	8	62	55	8	6	30	1.54
35408081--35408116	3	12.0	3	93	0	63	63	0	2	33	1.08
35408213--35408266	23	2.5	22	87	6	74	59	7	1	31	1.36
35408216--35408275	3	19.3	3	76	6	57	60	6	1	31	1.33
35411839--35411951	47	2.4	47	82	7	122	29	18	29	23	1.98
35419269--35419487	46	4.7	47	78	14	211	27	18	30	23	1.98
35419275--35419536	47	5.6	47	77	12	204	27	18	30	23	1.98
35419267--35419528	140	1.9	140	85	4	368	28	17	29	24	1.97
35420913--35420965	28	1.9	28	84	3	72	52	0	5	41	1.25
35420918--35420975	27	2.1	28	87	6	84	50	0	6	43	1.29
35421474--35421531	26	2.2	26	90	0	89	34	18	17	29	1.94
35425543--35425690	31	4.8	31	88	1	183	28	28	15	27	1.96
35425543--35425690	62	2.4	62	88	0	206	28	28	15	27	1.96
35425686--35425794	50	2.2	51	91	3	184	26	22	14	35	1.93
35428079--35428137	29	2.0	29	100	0	118	42	16	20	20	1.89
35429476--35429507	5	6.4	5	92	0	55	78	0	3	18	0.89
35436276--35436318	19	2.3	18	92	7	77	44	13	2	39	1.57
35443810--35443857	19	2.6	19	86	3	71	35	2	12	50	1.52
35446398--35446782	196	2.0	197	96	0	718	28	19	17	34	1.95
35447216--35447270	21	2.6	21	82	0	65	21	29	32	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35448454--35448637	48	3.9	47	82	5	208	26	27	18	27	1.98
35448450--35448637	96	2.0	96	85	4	254	26	27	18	27	1.98
35450489--35450713	40	5.7	40	85	6	253	25	26	21	25	2.00
35450489--35450713	79	2.8	79	80	7	258	25	26	21	25	2.00
35474403--35474567	85	1.9	85	82	0	204	26	13	18	41	1.88
35478788--35479002	46	4.6	47	76	6	197	23	27	19	28	1.98
35478879--35479057	48	3.9	44	78	13	173	25	29	20	24	1.99
35478788--35479005	91	2.3	93	81	3	242	23	27	20	28	1.99
35478788--35479055	46	5.7	46	75	10	195	23	27	20	27	1.99
35481797--35481900	51	2.0	51	98	0	199	35	14	25	25	1.93
35482316--35482340	6	4.2	6	100	0	50	20	48	0	32	1.50
35483167--35483478	46	7.0	47	86	7	393	22	24	14	38	1.92
35483300--35483467	84	2.0	84	98	0	327	24	25	16	34	1.95
35483167--35483477	130	2.3	133	88	5	441	22	24	14	38	1.92
35485888--35485955	30	2.3	30	84	5	84	27	19	5	47	1.72
35487987--35488025	20	2.0	20	89	0	60	56	2	0	41	1.13
35492127--35492211	42	2.0	42	86	0	116	28	15	27	29	1.96
35507743--35507807	17	3.7	17	76	13	69	69	4	4	21	1.25
35508019--35508048	15	2.0	15	100	0	60	26	6	13	53	1.64
35508723--35508797	33	2.3	33	83	4	89	34	20	21	24	1.96
35509292--35509425	67	2.0	67	98	0	259	23	11	19	45	1.82
35510743--35510798	28	2.0	29	89	3	87	19	46	19	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35513792--35514158	46	7.6	49	85	10	449	34	13	22	29	1.92
35513792--35514147	98	3.6	98	94	0	595	34	13	21	29	1.92
35514122--35514267	37	4.0	37	91	1	233	36	16	22	24	1.94
35515523--35515666	49	2.9	49	91	1	216	22	14	30	31	1.94
35518806--35519112	52	6.1	51	85	10	400	35	13	22	28	1.92
35518792--35519112	98	3.3	98	87	7	447	34	13	22	29	1.92
35518806--35519101	150	2.0	150	91	0	475	35	13	21	29	1.92
35519008--35519223	37	5.3	45	83	13	187	36	14	22	26	1.93
35519076--35519221	37	4.0	37	91	1	233	36	16	22	24	1.94
35521544--35521591	23	2.1	23	96	0	87	22	6	20	50	1.71
35522296--35522326	16	2.0	15	93	6	53	41	0	0	58	0.98
35522381--35522411	14	2.2	14	94	0	53	32	32	25	9	1.88
35534468--35534685	49	4.6	48	72	12	164	27	19	27	25	1.99
35548486--35548572	45	1.9	45	88	0	129	25	11	21	41	1.87
35555434--35555488	17	3.3	17	70	14	60	36	7	12	43	1.71
35555424--35555489	33	2.0	33	100	0	132	39	6	12	42	1.67
35563553--35563631	41	1.9	41	100	0	158	34	25	15	25	1.95
35564316--35564359	23	1.9	23	86	9	63	47	29	4	18	1.68
35567869--35568183	47	6.7	49	76	11	216	22	27	20	29	1.98
35568006--35568179	94	1.9	94	90	0	276	21	27	20	31	1.98
35571212--35571383	40	4.3	40	89	2	231	26	27	20	25	1.99
35571214--35571436	40	5.6	39	84	5	225	26	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35571212--35571436	80	2.8	79	82	7	249	26	27	20	25	1.99
35571368--35571445	40	1.9	41	82	10	97	26	28	20	24	1.99
35579157--35579327	40	4.3	40	87	3	204	25	27	21	25	1.99
35579159--35579380	40	5.6	39	81	6	198	25	27	21	26	1.99
35579312--35579388	40	1.9	41	84	7	104	27	28	19	24	1.99
35582150--35582188	17	2.3	17	86	8	53	25	0	0	74	0.82
35589096--35589124	14	2.1	14	100	0	58	51	6	0	41	1.28
35589169--35589210	12	3.7	12	87	12	70	76	0	23	0	0.79
35589169--35589211	22	2.0	22	100	0	86	74	0	25	0	0.82
35589169--35589213	17	2.6	17	82	6	56	75	0	24	0	0.80
35589440--35589497	30	2.0	28	83	12	73	41	0	20	37	1.53
35593460--35593725	46	5.7	44	76	10	142	22	30	19	27	1.98
35606277--35606528	49	5.3	47	72	11	190	25	30	18	25	1.98
35613991--35614158	49	3.6	46	84	9	189	28	32	16	23	1.96
35613991--35614207	93	2.3	96	81	5	244	26	29	18	24	1.98
35614589--35614645	29	1.9	30	89	3	89	28	22	8	40	1.84
35616948--35616987	21	2.0	21	95	5	73	52	10	32	5	1.56
35617869--35617914	20	2.3	20	88	0	65	50	0	13	36	1.41
35619576--35619678	42	2.4	42	95	1	179	18	25	36	19	1.94
35630052--35630095	21	2.3	18	88	11	61	36	0	6	56	1.26
35630101--35630148	20	2.4	20	85	0	60	31	4	0	64	1.12
35630005--35630150	9	15.2	9	64	22	57	35	1	3	59	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35644314--35644359	23	2.0	23	83	8	58	23	28	8	39	1.84
35651681--35651789	55	2.0	55	96	0	200	27	21	18	33	1.96
35656251--35656304	24	2.2	24	93	0	90	29	25	12	31	1.93
35659020--35659139	56	2.1	56	98	0	231	45	9	23	22	1.81
35659605--35659825	40	5.6	40	83	6	254	24	20	28	26	1.99
35659604--35659825	79	2.8	78	84	6	252	24	20	28	26	1.99
35659648--35659858	79	2.7	79	83	5	232	26	19	27	26	1.99
35666206--35666322	53	2.1	55	92	6	202	44	9	23	23	1.82
35667184--35667405	119	1.9	119	83	5	288	25	21	27	25	1.99
35667184--35667426	79	3.1	79	82	7	280	25	20	27	25	1.99
35667184--35667407	40	5.6	41	84	6	268	25	20	28	25	1.99
35682915--35683034	56	2.1	56	98	0	231	45	9	23	22	1.81
35684330--35684511	78	2.3	79	84	6	228	24	21	28	25	1.99
35684332--35684511	39	4.6	39	78	12	190	25	21	28	25	1.99
35684376--35684544	78	2.2	77	84	7	207	27	19	27	26	1.99
35684381--35684544	39	4.2	39	79	4	138	26	20	27	26	1.99
35690935--35691054	56	2.1	56	96	3	224	45	9	23	21	1.80
35691518--35691742	40	5.7	40	83	5	260	24	21	27	26	1.99
35691518--35691775	119	2.2	119	80	6	274	25	20	27	26	1.99
35699691--35699810	6	20.0	6	98	0	231	50	15	0	33	1.45
35700681--35700790	47	2.3	47	84	1	130	42	12	14	30	1.83
35704005--35704038	16	2.2	15	89	5	50	41	0	2	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35715343--35715966	318	2.0	318	99	0	1221	31	25	11	31	1.91
35720082--35720305	47	4.8	47	78	9	208	22	28	18	29	1.98
35724210--35724337	49	2.6	49	80	9	145	24	26	20	28	1.99
35724210--35724396	98	1.9	97	82	7	236	24	26	19	29	1.98
35724212--35724484	46	5.7	46	75	8	169	23	27	20	28	1.99
35741484--35741609	50	2.6	48	82	5	148	30	20	26	22	1.98
35743268--35743298	11	2.8	11	95	0	53	19	32	19	29	1.96
35744454--35744514	30	2.1	29	93	3	104	60	11	3	24	1.46
35745261--35745297	18	2.2	18	90	9	60	59	0	0	40	0.97
35745264--35745307	18	2.4	19	81	14	56	56	2	0	40	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295