genome.fa.s7.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  145  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45051387--45051887	132	3.8	132	91	0	806	33	25	15	25	1.95
45051787--45051978	91	2.1	91	88	1	278	33	25	15	26	1.95
45053970--45054045	35	2.2	35	86	9	102	39	0	5	55	1.23
45054243--45054295	21	2.5	21	90	0	79	30	35	9	24	1.87
45054445--45054695	70	3.6	70	89	2	335	27	26	18	26	1.98
45054941--45055107	83	2.0	83	100	0	334	33	7	14	44	1.72
45055868--45056015	42	3.5	42	77	9	129	24	16	25	33	1.96
45057601--45058655	70	15.1	70	74	3	614	29	26	17	26	1.98
45057690--45058026	141	2.4	141	81	2	356	29	27	17	26	1.98
45057661--45058439	279	2.8	277	77	4	794	28	27	17	25	1.98
45057666--45058563	279	3.2	274	76	5	787	29	26	17	26	1.98
45058365--45058616	139	1.8	139	84	0	342	31	26	16	26	1.96
45057673--45058671	279	3.6	277	76	4	756	29	27	17	26	1.97
45064578--45064638	19	3.2	19	77	6	61	59	1	3	36	1.24
45065331--45065390	28	2.1	28	84	0	75	31	30	5	33	1.79
45066425--45066461	12	3.1	12	85	14	58	0	24	51	24	1.49
45070736--45070798	28	2.2	28	91	0	99	31	30	6	31	1.83
45073787--45073818	15	2.1	15	100	0	64	34	12	21	31	1.91
45075125--45075175	22	2.3	23	80	10	61	54	0	0	45	0.99
45076965--45076992	11	2.5	11	100	0	56	28	0	0	71	0.86
45079138--45079553	46	8.9	46	88	4	575	39	15	22	22	1.91
45079139--45079553	192	2.2	186	90	4	638	39	15	22	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45080917--45080962	15	2.9	15	90	6	65	67	0	6	26	1.15
45080927--45081025	15	6.8	14	69	18	51	62	2	9	26	1.36
45081390--45081463	35	2.1	35	82	7	87	55	9	16	18	1.67
45108024--45108053	14	2.1	14	100	0	60	60	13	0	26	1.34
45114530--45114570	15	2.8	15	75	17	50	70	0	0	29	0.87
45117440--45117498	22	2.7	22	80	15	68	33	16	13	35	1.88
45118656--45118690	3	11.7	3	93	0	61	62	0	2	34	1.10
45119365--45119402	20	1.9	20	88	0	58	78	0	10	10	0.95
45130193--45130232	20	2.0	20	90	0	62	65	2	0	32	1.06
45130201--45130532	111	2.8	117	82	8	415	52	12	3	32	1.55
45131412--45131523	56	2.0	56	100	0	224	26	26	7	39	1.82
45139296--45139340	6	7.7	6	90	5	74	84	0	2	13	0.72
45141361--45141571	28	7.5	28	85	0	251	24	20	14	40	1.90
45141361--45141571	84	2.5	84	85	1	280	24	20	14	40	1.90
45141361--45141571	56	3.8	56	87	0	278	24	20	14	40	1.90
45144165--45144303	54	2.6	54	89	0	197	25	24	28	20	1.99
45146231--45146315	43	2.0	43	95	0	152	23	20	8	48	1.76
45147008--45147470	48	9.6	48	88	1	626	24	17	31	26	1.97
45155606--45155650	20	2.3	20	84	3	56	24	2	11	62	1.40
45161169--45161206	16	2.4	17	86	13	62	26	36	13	23	1.91
45168142--45168192	7	7.3	7	78	6	50	56	1	41	0	1.10
45168478--45168512	12	2.9	12	91	0	52	31	40	0	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45175323--45175355	11	3.1	11	86	4	50	72	0	27	0	0.85
45176821--45176853	11	3.0	11	91	8	50	54	0	0	45	0.99
45177751--45177809	2	29.5	2	100	0	118	0	49	0	50	1.00
45179200--45179443	124	2.0	124	90	3	384	22	18	21	38	1.94
45180621--45180654	18	1.9	18	88	5	52	38	5	0	55	1.24
45192165--45192250	44	2.0	44	86	4	120	36	13	25	24	1.93
45192388--45192509	47	2.6	47	94	0	217	36	13	23	26	1.93
45192491--45192790	55	5.6	54	83	2	352	35	17	24	23	1.95
45192496--45192790	108	2.7	108	91	1	466	35	17	24	22	1.96
45193832--45193859	14	2.0	14	100	0	56	50	14	0	35	1.43
45200420--45200447	9	3.1	9	100	0	56	35	10	10	42	1.74
45205497--45205666	46	3.7	46	75	13	168	22	17	28	31	1.97
45205491--45205661	93	1.8	93	94	0	306	21	18	29	30	1.97
45208630--45208674	15	3.0	15	83	0	63	11	11	15	62	1.55
45214610--45214785	46	3.8	45	78	10	194	22	21	28	28	1.99
45214607--45214777	93	1.8	93	92	0	288	22	21	28	27	1.99
45221187--45221320	55	2.4	55	93	0	223	16	33	26	23	1.95
45230333--45230377	21	2.1	21	87	0	63	28	22	31	17	1.97
45231513--45231632	46	2.6	45	79	17	124	25	28	18	27	1.98
45237967--45238133	43	3.9	43	84	4	221	24	20	31	23	1.98
45237984--45238217	43	5.6	41	75	9	163	26	19	30	23	1.98
45243128--45244333	603	2.0	603	96	0	2241	30	9	20	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45245155--45245325	43	4.0	43	86	1	236	25	20	30	23	1.98
45245172--45245405	43	5.6	41	77	7	161	26	20	29	23	1.99
45249231--45249275	21	2.1	21	95	0	81	26	26	31	15	1.96
45250455--45250575	46	2.7	44	84	5	152	28	31	14	25	1.95
45250552--45250674	47	2.6	46	83	11	144	26	29	14	29	1.95
45253188--45253212	9	2.8	9	100	0	50	44	8	0	48	1.32
45260917--45261184	48	5.6	48	74	7	224	29	25	16	28	1.97
45260918--45261195	96	2.9	96	88	5	411	29	25	16	28	1.96
45268912--45268963	26	2.0	26	85	7	70	36	1	15	46	1.57
45275909--45275965	22	2.6	21	78	8	60	40	24	21	14	1.90
45285516--45285689	48	3.6	47	75	7	170	28	26	18	27	1.98
45285462--45285698	96	2.5	96	83	2	287	27	25	18	28	1.98
45287627--45287690	21	3.0	21	69	0	56	26	20	31	21	1.98
45294541--45294574	16	2.1	16	88	5	50	8	0	14	76	1.01
45296839--45296897	31	1.9	31	96	0	109	38	13	5	42	1.66
45299964--45300002	20	1.9	20	89	5	60	7	25	15	51	1.70
45301765--45301816	19	2.7	19	74	11	52	67	0	0	32	0.91
45312241--45312420	48	3.8	48	79	2	209	26	19	30	23	1.98
45312239--45312417	96	1.9	96	86	2	261	25	19	30	24	1.98
45314261--45314400	27	5.2	27	88	5	178	15	24	22	38	1.92
45314261--45314420	81	2.0	81	83	4	207	15	24	21	38	1.92
45322125--45322236	27	4.1	27	75	12	104	16	22	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45330506--45330657	47	3.2	46	84	3	160	32	23	14	29	1.94
45330549--45330677	47	2.7	46	84	4	168	34	24	13	26	1.93
45330577--45330771	54	3.8	54	78	7	176	31	24	14	29	1.94
45336107--45336154	25	2.0	24	84	12	62	22	10	2	64	1.35
45343900--45343939	21	1.9	21	84	0	53	27	12	27	32	1.93
45344028--45344083	6	9.3	6	79	12	62	16	5	0	78	0.92
45344026--45344083	25	2.2	26	93	6	100	17	5	0	77	0.94
45344027--45344096	31	2.3	31	79	0	77	17	8	0	74	1.06
45344043--45344098	25	2.2	25	87	9	78	14	7	0	78	0.95
45345556--45345589	18	1.9	18	94	5	61	32	20	11	35	1.89
45346799--45346929	28	4.7	28	89	0	181	24	34	16	25	1.95
45347146--45347195	16	3.1	16	82	0	64	8	24	24	44	1.80
45349293--45349329	15	2.5	15	86	0	56	37	43	2	16	1.62
45351549--45351651	28	3.7	28	84	5	118	25	36	14	23	1.93
45351869--45351931	16	3.9	16	82	0	72	15	23	12	47	1.80
45351863--45351929	32	2.1	32	85	0	89	13	20	14	50	1.77
45351867--45351937	24	3.0	24	74	12	65	16	21	15	46	1.84
45354735--45354777	21	2.0	22	82	13	54	6	4	37	51	1.50
45355157--45355183	12	2.2	12	100	0	54	14	0	0	85	0.61
45357508--45357708	62	3.2	62	81	2	172	23	25	23	27	2.00
45363611--45363655	18	2.5	19	75	13	51	55	4	2	37	1.32
45367878--45368063	41	4.6	41	89	4	254	26	23	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45367878--45368099	81	2.8	79	84	5	252	26	23	26	24	2.00
45372465--45372780	48	6.6	49	76	7	281	26	20	28	23	1.99
45372465--45372780	144	2.2	144	79	6	354	26	20	28	23	1.99
45374716--45374755	21	2.0	20	90	5	62	45	27	7	20	1.78
45382946--45383280	47	7.1	47	83	5	367	32	11	29	25	1.91
45382946--45383280	94	3.6	94	93	1	537	32	11	29	25	1.91
45382946--45383280	141	2.4	141	93	0	562	32	11	29	25	1.91
45383250--45383386	48	2.8	48	93	4	222	35	6	27	31	1.82
45383522--45383640	37	3.2	37	90	0	184	25	18	30	26	1.98
45390693--45390950	80	3.2	80	89	1	385	25	23	27	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295