genome.fa.s7.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  114  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34345850--34345893	21	2.1	21	100	0	88	29	4	25	40	1.75
34355650--34355817	90	1.9	90	89	2	266	19	19	23	38	1.93
34355652--34355846	90	2.2	90	84	5	243	21	17	23	38	1.93
34363818--34363888	26	2.7	26	82	4	81	69	0	1	29	0.98
34371445--34371484	19	2.2	18	90	4	62	60	0	0	40	0.97
34375265--34375311	17	2.6	19	83	13	71	36	36	0	27	1.57
34376833--34376890	29	2.0	29	93	0	98	37	15	17	29	1.90
34385519--34385597	37	2.1	37	88	4	115	25	30	18	25	1.98
34385716--34386204	47	10.4	47	92	0	780	29	30	8	32	1.87
34389512--34389592	37	2.3	35	83	12	94	50	12	12	24	1.74
34389540--34389594	19	3.1	18	82	12	78	49	10	12	27	1.74
34389547--34389632	41	2.0	42	82	4	102	46	13	15	24	1.82
34389651--34389697	22	2.3	22	89	10	73	46	8	2	42	1.46
34389704--34389894	36	5.2	37	75	12	144	42	8	17	30	1.80
34389758--34390248	17	27.2	18	68	13	251	46	8	12	32	1.71
34389707--34389902	74	2.7	75	80	7	181	43	9	17	29	1.80
34389758--34390248	36	13.6	35	68	16	145	46	8	12	32	1.71
34389845--34390028	35	5.3	35	71	12	101	45	9	13	32	1.75
34390116--34390235	35	3.4	34	78	13	118	50	5	10	32	1.61
34390353--34390394	21	2.0	20	90	4	66	40	9	14	35	1.78
34390756--34390817	10	5.9	10	75	17	54	0	19	0	80	0.71
34390756--34390812	17	3.4	16	81	13	71	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34390758--34390802	23	2.0	23	91	8	74	0	17	0	82	0.68
34390764--34390815	16	3.5	15	85	14	72	0	17	0	82	0.66
34390952--34390985	13	2.7	13	90	4	52	2	14	8	73	1.19
34391504--34391620	30	3.9	29	77	11	94	44	3	22	29	1.69
34391519--34391620	30	3.4	30	84	2	134	44	3	22	29	1.71
34391619--34391651	14	2.3	15	89	5	50	24	0	3	72	0.98
34391894--34392109	53	4.0	55	86	9	304	36	17	16	29	1.92
34392088--34392122	14	2.5	14	90	0	52	60	2	17	20	1.49
34392056--34392461	175	2.3	174	84	7	525	37	18	17	27	1.93
34392053--34392457	87	4.6	89	82	8	481	37	18	17	27	1.93
34392353--34392386	16	2.1	16	88	0	50	64	5	11	17	1.45
34392405--34393786	193	7.2	193	95	1	2494	35	20	13	30	1.91
34392405--34393786	577	2.4	578	97	0	2601	35	20	13	30	1.91
34401799--34401879	37	2.3	35	83	12	94	50	12	12	24	1.74
34401827--34401881	19	3.1	18	82	12	78	49	10	12	27	1.74
34401989--34402095	36	2.9	36	80	13	112	42	10	17	29	1.83
34402043--34402519	17	26.2	18	69	13	210	47	7	11	33	1.69
34402043--34402505	36	12.8	35	70	12	188	46	7	12	33	1.69
34402078--34402122	22	2.0	22	86	0	63	40	6	8	44	1.62
34402381--34402411	16	1.9	16	93	0	53	61	0	6	32	1.21
34402387--34402506	35	3.4	35	78	8	127	51	5	10	32	1.58
34402624--34402665	21	2.0	20	90	4	66	40	9	14	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34402681--34402724	19	2.2	21	84	8	56	25	6	9	59	1.53
34403039--34403082	7	5.9	7	87	12	61	0	15	0	84	0.63
34403030--34403081	23	2.2	23	90	10	79	0	15	1	82	0.75
34403029--34403084	17	3.4	17	87	9	80	0	14	1	83	0.72
34403164--34403205	17	2.5	17	100	0	84	0	35	42	21	1.53
34403220--34403279	13	4.7	13	80	8	61	0	20	6	73	1.05
34403213--34403258	23	2.0	23	95	0	83	2	23	4	69	1.17
34403366--34403421	18	3.1	17	73	19	51	1	19	0	78	0.84
34403806--34403907	30	3.4	30	84	2	134	44	3	22	29	1.71
34404603--34404825	40	5.6	40	84	5	247	23	26	23	26	2.00
34404595--34404825	120	1.9	120	81	6	281	23	25	23	26	2.00
34405133--34405211	29	2.7	29	86	5	106	27	32	15	24	1.95
34405193--34405293	43	2.3	43	96	0	184	25	36	13	23	1.92
34407152--34407230	37	2.1	37	88	4	115	25	30	18	25	1.98
34407349--34407830	47	10.4	47	90	3	735	28	30	8	32	1.87
34414209--34414352	55	2.6	55	78	6	166	25	28	26	19	1.99
34417431--34417470	20	2.0	21	85	14	57	25	5	15	55	1.60
34420323--34420466	41	3.5	41	81	3	182	30	14	18	36	1.90
34420856--34420906	21	2.4	21	77	6	59	58	1	0	39	1.09
34421737--34421875	74	1.9	73	90	1	224	38	3	12	45	1.59
34421756--34421875	37	3.2	37	70	13	111	41	4	10	43	1.59
34425462--34425491	7	4.3	7	91	0	51	16	0	3	80	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34426738--34426823	42	2.0	42	100	0	172	45	11	9	33	1.73
34431062--34431131	34	2.1	34	94	0	122	27	21	25	25	1.99
34437370--34437428	20	3.0	20	69	11	50	44	3	6	45	1.47
34438549--34438579	14	2.1	14	94	5	53	0	22	0	77	0.77
34440483--34440518	18	2.1	17	94	5	63	47	0	16	36	1.47
34444497--34444757	131	2.0	132	90	0	416	37	18	16	27	1.93
34447530--34447912	88	4.3	88	82	4	351	24	22	19	33	1.97
34459367--34459701	131	2.6	129	86	3	453	37	19	16	27	1.92
34475891--34475924	17	2.0	17	94	0	59	38	0	5	55	1.24
34476042--34476067	13	2.0	13	100	0	52	53	0	0	46	1.00
34477878--34477924	22	2.1	22	92	0	76	34	34	17	14	1.90
34478959--34479106	61	2.5	60	85	6	192	26	16	10	45	1.80
34479727--34479758	9	3.7	9	95	4	57	18	0	0	81	0.70
34486872--34486911	4	10.0	4	94	0	71	25	0	22	52	1.47
34491344--34491434	20	4.7	19	70	10	51	37	14	2	46	1.57
34491640--34491703	20	3.2	20	82	6	76	43	10	4	40	1.61
34493752--34493813	29	2.1	30	90	6	99	25	9	16	48	1.76
34498415--34498460	22	2.1	22	100	0	92	52	4	21	21	1.64
34498419--34498465	22	2.1	22	92	4	76	48	8	23	19	1.75
34498896--34498920	13	1.9	13	100	0	50	32	4	24	40	1.73
34499999--34500163	43	3.9	41	75	16	124	25	17	25	31	1.97
34500690--34500735	23	2.0	24	86	4	67	17	2	28	52	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34502604--34502677	37	2.0	37	94	0	130	44	18	8	28	1.78
34503215--34503263	23	2.1	23	100	0	98	44	12	8	34	1.71
34517751--34518137	45	8.6	45	70	9	186	43	14	16	25	1.86
34517846--34518137	90	3.3	89	86	1	388	44	14	16	25	1.85
34517851--34518208	45	8.0	45	68	12	150	43	14	15	27	1.85
34518106--34518209	44	2.3	46	80	4	124	39	13	14	32	1.85
34520051--34520081	15	2.1	15	93	0	53	29	0	32	38	1.57
34521017--34521050	17	2.0	18	88	11	54	47	0	11	41	1.40
34523262--34523503	37	6.5	37	84	1	297	21	23	17	37	1.94
34523262--34523538	74	3.7	74	80	3	227	20	23	18	36	1.95
34523683--34523741	22	2.8	22	82	7	70	42	3	16	37	1.66
34532529--34532573	6	7.2	6	82	9	54	48	17	4	28	1.66
34539599--34539635	19	1.9	20	88	5	58	72	0	0	27	0.84
34540606--34540635	2	15.5	2	93	6	53	50	0	0	50	1.00
34540801--34540825	2	12.5	2	100	0	50	52	0	0	48	1.00
34542971--34543038	35	1.9	35	84	0	91	30	22	16	30	1.95
34543166--34543232	35	1.9	35	84	0	89	34	17	20	26	1.96
34551633--34551659	3	9.0	3	100	0	54	0	33	0	66	0.92
34559095--34559133	20	2.0	20	94	0	69	17	20	48	12	1.80
34559790--34560138	133	2.6	133	83	3	380	24	25	18	31	1.97
34559923--34560098	44	4.0	43	66	13	124	23	25	18	32	1.97
34559836--34560166	133	2.5	132	83	4	439	25	25	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34560153--34560303	46	3.3	47	83	3	180	22	23	17	36	1.95
34560164--34560297	46	2.9	46	87	0	196	20	25	18	35	1.96
34572389--34572437	9	4.9	10	79	20	50	81	0	4	14	0.83
34572399--34572435	8	4.5	8	86	6	56	83	0	2	13	0.74
34572399--34572464	17	3.8	17	76	11	62	74	0	1	24	0.91
34572484--34572524	20	2.0	20	86	9	57	58	4	12	24	1.53
34572551--34572600	26	1.9	26	87	0	73	58	0	8	34	1.28
34572747--34572849	3	33.0	3	73	11	55	62	2	4	30	1.31
34575298--34575618	46	7.0	46	89	0	408	21	23	14	39	1.91
34577778--34577814	20	1.9	20	88	5	58	51	8	0	40	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295