genome.fa.s7.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  170  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53888049--53888141	41	2.2	43	85	11	122	30	19	26	23	1.98
53888146--53888235	40	2.2	40	96	0	144	28	17	28	24	1.97
53890164--53890332	27	6.4	26	79	8	171	25	20	17	36	1.95
53890151--53890332	53	3.4	53	82	5	154	26	20	18	34	1.95
53898897--53898944	23	2.1	23	100	0	96	41	12	20	25	1.87
53901689--53901725	18	2.1	19	85	10	51	10	29	43	16	1.82
53912703--53912911	38	5.0	38	73	18	166	30	24	15	29	1.96
53912743--53912881	48	2.9	48	88	1	199	30	23	15	30	1.95
53915988--53916024	19	2.0	19	89	5	58	64	10	2	21	1.37
53920590--53920670	27	3.0	27	85	0	108	32	19	20	27	1.97
53920654--53920766	27	4.2	27	89	4	158	41	20	7	30	1.79
53920635--53920749	54	2.1	54	84	6	144	40	22	9	26	1.85
53920654--53920831	54	3.3	53	79	7	164	41	22	7	28	1.82
53920654--53920839	81	2.3	81	78	7	189	40	22	8	29	1.82
53920761--53920835	27	2.8	27	87	4	98	41	24	9	25	1.84
53920800--53921151	27	13.2	27	84	2	415	30	23	6	39	1.81
53921387--53921438	27	2.0	26	84	3	68	17	26	21	34	1.95
53921477--53921536	27	2.3	27	85	2	77	21	23	20	35	1.96
53921655--53921754	6	16.3	6	72	15	80	17	19	15	49	1.80
53921655--53921754	43	2.3	43	86	3	130	17	19	15	49	1.80
53923615--53923697	27	3.1	27	85	0	112	31	19	21	27	1.97
53923679--53923874	27	7.3	27	82	4	189	39	19	9	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53923852--53924234	27	14.2	27	85	5	454	30	22	6	40	1.78
53923825--53924234	54	7.6	54	91	0	559	30	22	6	40	1.80
53923852--53924234	81	4.7	81	89	1	545	30	22	6	40	1.78
53924741--53924844	31	3.4	31	84	0	136	18	18	14	49	1.80
53924741--53924865	6	20.3	6	69	16	69	18	17	14	49	1.79
53924763--53924856	31	2.8	34	76	14	95	19	20	12	47	1.81
53935586--53935708	28	4.4	28	88	2	167	26	12	27	33	1.92
53935586--53935708	55	2.2	57	86	2	169	26	12	27	33	1.92
53935611--53935721	28	4.0	27	88	3	89	29	11	25	33	1.91
53940007--53940179	46	3.7	46	77	13	201	21	20	27	29	1.98
53940004--53940174	93	1.8	93	94	0	306	21	21	28	28	1.98
53942453--53942686	27	8.7	27	85	2	274	38	19	16	26	1.92
53946471--53946596	46	2.7	46	96	0	225	29	27	22	20	1.98
53948999--53949054	15	3.7	16	88	7	82	60	10	16	12	1.58
53951794--53951964	93	1.8	93	96	0	315	28	28	21	21	1.99
53951789--53951961	46	3.7	46	78	13	210	28	27	21	21	1.99
53954374--53954606	27	8.7	26	82	5	243	38	19	14	27	1.91
53954376--53954606	54	4.3	53	83	3	268	38	19	14	27	1.91
53954374--53954606	81	2.9	80	83	3	281	38	19	14	27	1.91
53956779--53956884	27	3.9	28	82	2	119	33	17	26	21	1.96
53970997--53971027	15	2.1	15	93	0	53	32	0	3	64	1.09
53971331--53971436	43	2.5	43	83	4	126	26	19	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53971283--53971425	43	3.3	42	75	13	123	27	18	21	32	1.96
53973893--53973964	34	2.1	34	82	5	83	26	20	19	33	1.97
53981878--53982036	43	3.7	43	76	4	142	27	18	23	30	1.98
53985672--53985740	20	3.3	20	67	11	57	36	23	2	37	1.70
53985664--53985751	43	2.0	43	97	0	167	36	22	3	37	1.71
53985668--53985776	43	2.6	43	85	7	134	39	22	2	35	1.68
53987042--53987129	23	3.8	23	77	7	88	36	17	25	21	1.94
54000425--54000451	6	4.5	6	100	0	54	14	0	0	85	0.61
54011202--54011230	13	2.2	13	100	0	58	31	0	13	55	1.39
54016696--54016734	6	6.5	6	90	0	60	17	2	0	79	0.84
54016693--54016741	12	4.2	12	84	5	57	18	4	0	77	0.92
54016696--54016734	18	2.2	18	95	0	69	17	2	0	79	0.84
54016701--54016741	18	2.3	18	86	0	55	21	4	0	73	1.02
54018391--54018605	40	5.4	39	90	5	297	26	27	21	24	1.99
54022115--54022224	27	4.1	26	79	10	87	36	20	23	20	1.95
54025807--54025835	13	2.2	13	100	0	58	31	0	13	55	1.39
54047612--54047796	40	4.6	39	82	5	194	25	22	27	24	2.00
54047612--54047796	79	2.3	81	82	7	218	25	22	27	24	2.00
54047651--54047829	79	2.3	79	77	7	186	28	21	25	24	1.99
54055568--54055752	79	2.3	81	83	7	227	24	22	27	24	2.00
54055569--54055752	40	4.6	40	82	9	207	25	22	27	24	2.00
54055621--54055785	79	2.1	79	83	6	201	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54064092--54064148	30	1.9	30	85	0	78	43	8	21	26	1.81
54064569--54064829	46	5.6	45	72	12	224	21	19	29	29	1.98
54064621--54064783	47	3.5	47	74	14	192	21	18	29	30	1.97
54064566--54064830	93	2.8	93	95	0	467	21	19	29	29	1.98
54082986--54083133	26	5.8	26	91	1	221	28	22	22	27	1.99
54083245--54083316	25	2.9	25	89	2	101	27	16	22	33	1.95
54088852--54088929	29	2.7	28	82	11	95	24	15	32	28	1.95
54088882--54089731	174	4.9	174	98	0	1619	29	14	25	31	1.94
54096845--54096922	29	2.7	28	82	11	95	24	15	32	28	1.95
54096875--54097202	174	1.9	174	96	0	611	29	14	24	31	1.94
54098954--54099063	56	1.9	57	87	5	161	25	14	28	31	1.95
54105277--54105360	28	3.2	28	64	25	74	23	14	30	30	1.94
54105229--54105417	50	3.8	50	82	2	220	25	16	26	31	1.96
54108428--54108644	40	5.5	40	88	3	289	24	28	23	23	2.00
54110994--54111114	43	2.8	43	81	9	122	25	21	26	26	1.99
54111052--54111148	43	2.3	43	85	3	124	28	21	27	21	1.99
54117312--54117348	20	1.9	18	89	10	56	54	5	2	37	1.38
54129144--54129185	22	1.9	22	90	0	66	30	9	21	38	1.85
54129269--54129297	15	2.0	15	93	6	51	3	13	0	82	0.79
54131370--54131502	69	1.9	70	90	1	214	32	14	16	36	1.89
54134217--54134286	27	2.6	27	93	2	113	30	28	14	27	1.95
54134216--54134311	28	3.4	28	85	2	104	31	29	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54136060--54136654	47	12.6	47	94	1	1028	32	8	29	29	1.86
54136060--54136654	143	4.2	141	95	0	1028	32	8	29	29	1.86
54136526--54136604	25	3.3	25	64	10	74	32	3	29	34	1.75
54140308--54140642	50	6.7	50	78	7	329	26	17	25	31	1.97
54140308--54140642	101	3.3	99	77	7	318	26	17	25	31	1.97
54140316--54140643	151	2.2	151	91	2	516	26	16	25	31	1.97
54142590--54142620	16	1.9	16	93	0	53	19	12	3	64	1.41
54145462--54145945	27	18.0	27	86	0	412	43	19	12	24	1.86
54145464--54145945	54	8.9	54	83	2	524	43	19	12	24	1.86
54145462--54145945	81	6.0	81	85	0	574	43	19	12	24	1.86
54152350--54152527	27	6.6	27	85	3	214	30	28	14	26	1.95
54152371--54152526	82	1.9	81	89	3	242	30	28	14	26	1.95
54158625--54158847	53	4.2	53	77	5	216	37	17	24	20	1.94
54164376--54164475	31	3.1	32	69	21	100	51	19	0	30	1.47
54164359--54164493	64	2.1	64	92	1	225	50	18	0	31	1.47
54166331--54166369	21	1.9	20	85	15	53	38	12	17	30	1.88
54170841--54171571	358	2.0	358	98	0	1408	36	17	19	26	1.94
54197927--54197969	21	2.0	21	95	0	77	18	30	23	27	1.98
54201926--54201952	12	2.2	12	100	0	54	51	7	0	40	1.30
54202399--54202493	28	3.4	28	89	2	129	27	12	27	32	1.93
54202427--54202509	27	3.0	27	85	5	78	31	12	24	32	1.91
54206510--54206604	46	2.0	47	95	4	174	29	14	9	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54209342--54209393	27	2.0	26	84	3	68	17	26	21	34	1.95
54209323--54209460	67	2.1	67	86	2	188	18	26	22	31	1.97
54216566--54216629	33	2.0	32	84	3	83	23	23	17	35	1.95
54217471--54217516	22	2.2	20	84	7	56	47	0	8	43	1.34
54223125--54223176	27	1.9	27	84	0	68	65	1	25	7	1.30
54225933--54226028	31	3.1	31	90	0	156	27	21	26	25	2.00
54226053--54226178	47	2.7	48	84	9	170	28	15	26	29	1.96
54226147--54226261	42	2.7	42	82	6	144	31	13	27	27	1.93
54230589--54230714	50	2.5	50	88	6	175	35	15	23	25	1.94
54230690--54230869	31	5.8	31	87	2	238	28	18	26	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295