genome.fa.s7.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  131  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40149558--40149794	80	3.0	80	91	0	366	24	18	28	28	1.98
40149960--40150012	25	2.1	25	82	6	63	35	13	30	20	1.91
40152459--40152495	18	2.0	19	89	5	58	29	0	24	45	1.53
40152811--40152882	22	3.1	22	65	18	56	36	6	27	29	1.83
40152569--40153017	47	9.6	47	94	0	718	34	11	27	26	1.90
40152538--40153051	47	10.9	47	90	0	704	33	10	28	26	1.90
40153031--40153121	46	2.0	46	88	0	137	35	6	30	27	1.82
40154890--40154938	23	2.1	23	100	0	98	40	34	4	20	1.71
40158447--40158471	2	12.5	2	100	0	50	52	48	0	0	1.00
40163198--40163265	34	2.0	34	85	0	91	48	17	8	25	1.76
40170797--40170829	16	2.1	16	100	0	66	48	27	6	18	1.71
40172263--40172379	29	4.1	28	74	12	87	28	15	29	27	1.96
40176574--40176603	14	2.1	14	93	0	51	30	13	16	40	1.87
40179625--40179649	2	12.5	2	100	0	50	52	0	0	48	1.00
40184759--40184832	27	3.0	24	78	13	87	35	24	12	28	1.91
40184888--40184967	24	3.2	24	68	16	63	38	16	7	37	1.77
40184633--40184979	51	6.8	51	82	1	363	38	19	10	30	1.86
40184633--40184979	153	2.3	153	84	3	464	38	19	10	30	1.86
40188537--40188581	21	2.1	21	95	0	81	33	6	4	55	1.46
40193003--40193044	21	1.9	23	85	9	61	57	14	4	23	1.56
40195223--40195258	18	2.0	18	94	0	63	80	0	8	11	0.90
40198645--40198671	14	1.9	14	100	0	54	51	0	7	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40208387--40208500	43	2.7	42	81	5	149	28	15	25	30	1.96
40209747--40209806	10	6.0	10	75	14	61	66	1	10	21	1.30
40209823--40209847	13	1.9	13	100	0	50	40	16	0	44	1.47
40210414--40210454	7	5.7	7	88	5	64	17	0	0	82	0.66
40210446--40210629	96	1.9	97	89	1	289	31	28	14	25	1.95
40214746--40214804	29	2.0	29	96	0	109	35	13	5	45	1.66
40218105--40218154	10	5.0	10	85	0	73	74	2	2	22	1.03
40222094--40222140	3	15.7	3	100	0	94	0	34	0	65	0.93
40226155--40226233	39	2.0	39	100	0	158	43	20	13	22	1.87
40230402--40230435	17	2.0	17	88	0	50	55	11	14	17	1.68
40231193--40231464	41	6.6	41	96	0	465	26	19	22	30	1.98
40231196--40231506	82	3.8	82	93	2	502	27	19	23	29	1.98
40231193--40231506	123	2.6	123	90	3	481	27	19	23	29	1.98
40238667--40238726	29	2.1	29	100	0	120	33	13	20	33	1.91
40242387--40242433	15	2.8	17	78	18	53	63	0	2	34	1.06
40242399--40242441	22	2.0	22	90	0	68	58	0	4	37	1.19
40253635--40253777	40	3.6	40	87	5	209	26	28	22	22	1.99
40258965--40259036	16	4.6	16	85	1	92	29	23	5	41	1.77
40260551--40260773	40	5.6	40	83	3	227	25	28	21	24	1.99
40260705--40260782	40	1.9	41	82	10	97	26	28	21	23	1.99
40268454--40268676	40	5.6	40	83	3	227	25	28	21	24	1.99
40280074--40280224	68	2.3	64	81	10	162	28	15	29	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40286345--40286386	21	2.0	22	86	13	61	64	4	0	30	1.14
40296088--40296149	32	1.9	32	96	0	115	38	22	9	29	1.86
40297921--40297949	5	6.0	5	92	8	51	0	17	0	82	0.66
40299933--40299995	30	2.1	31	82	8	76	57	7	3	31	1.43
40304890--40304919	12	2.5	12	100	0	60	43	0	10	46	1.37
40305054--40305097	19	2.3	19	92	4	70	27	11	11	50	1.72
40306229--40306278	23	2.1	24	96	3	93	38	8	0	54	1.30
40310095--40310121	14	1.9	14	100	0	54	37	14	18	29	1.91
40312346--40312388	20	2.2	19	83	4	50	51	6	0	41	1.29
40315496--40315563	34	2.0	34	91	0	109	35	14	19	30	1.92
40315862--40315904	22	1.9	23	85	4	61	69	2	2	25	1.12
40315862--40315904	23	2.0	21	86	9	59	69	2	2	25	1.12
40315898--40315945	20	2.3	20	83	13	62	41	0	2	56	1.11
40319359--40319469	56	2.0	56	83	3	143	35	13	15	36	1.87
40322124--40322264	51	2.8	50	86	3	212	28	26	20	24	1.99
40323388--40323494	52	2.1	52	100	0	214	45	14	13	26	1.82
40325850--40325887	13	2.8	13	85	14	51	39	0	0	60	0.97
40327836--40327875	18	2.2	18	90	0	62	70	0	5	25	1.08
40330839--40331016	27	6.6	27	81	3	187	27	14	27	30	1.95
40330836--40331016	82	2.2	81	81	2	211	27	14	27	30	1.95
40332953--40333081	42	3.1	42	89	1	206	31	21	20	26	1.98
40332959--40333082	41	3.0	41	90	1	203	29	22	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40346227--40346269	13	3.1	14	84	12	54	60	0	0	39	0.97
40357035--40357077	21	2.0	21	100	0	86	4	13	18	62	1.48
40360546--40360583	6	6.3	6	82	11	51	15	0	0	84	0.63
40371687--40371858	27	6.4	27	86	0	245	27	17	16	38	1.91
40374634--40374677	22	2.0	22	86	0	61	52	0	0	47	1.00
40374697--40374738	13	2.9	14	80	13	50	54	0	0	45	0.99
40374701--40374737	16	2.3	16	86	13	58	59	0	0	40	0.97
40377107--40377146	20	2.1	19	85	4	53	30	17	5	47	1.69
40378422--40378540	63	1.9	63	87	3	177	21	17	29	31	1.96
40379646--40379696	22	2.4	21	80	3	57	43	9	9	37	1.71
40380551--40380578	14	2.0	14	100	0	56	57	7	7	28	1.52
40382199--40382243	23	2.0	23	90	0	72	48	8	2	40	1.47
40387061--40387208	25	6.0	25	76	10	101	27	21	18	32	1.97
40387147--40387213	24	2.8	24	81	6	82	31	22	19	26	1.98
40387905--40387943	10	3.9	10	100	0	78	41	0	10	48	1.37
40391156--40391356	52	4.0	52	73	12	159	26	17	27	28	1.98
40391275--40391365	46	2.0	46	86	0	128	23	16	29	30	1.96
40391366--40391428	28	2.2	28	97	0	117	34	14	19	31	1.91
40394722--40394772	24	2.2	23	92	3	84	1	11	0	86	0.66
40394722--40394764	12	3.6	12	100	0	86	0	13	0	86	0.58
40394810--40395115	118	2.6	118	83	6	365	29	31	16	22	1.96
40395881--40395971	42	2.2	42	89	0	137	20	12	34	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40395897--40395982	42	2.0	42	88	0	127	25	12	31	30	1.93
40396089--40396150	7	8.9	7	77	20	51	75	0	4	19	0.97
40396080--40396153	27	2.6	29	80	14	84	75	0	5	18	0.99
40396096--40396152	30	1.9	29	89	10	89	75	0	7	17	1.02
40398778--40398829	22	2.4	22	100	0	104	13	21	17	48	1.81
40401024--40401256	25	9.4	25	66	17	76	39	20	13	26	1.90
40401133--40401266	50	2.7	50	85	0	187	38	19	13	28	1.89
40403605--40403672	29	2.3	29	76	14	77	29	7	0	63	1.21
40403596--40403664	23	3.1	23	74	18	65	28	8	0	62	1.25
40403806--40403916	3	36.3	3	69	10	55	28	7	2	61	1.36
40406056--40406100	19	2.4	19	88	7	65	22	22	13	42	1.88
40409544--40409571	11	2.5	11	100	0	56	85	7	0	7	0.73
40411208--40411322	44	2.6	44	85	2	149	35	13	22	27	1.92
40411208--40411341	46	3.0	45	82	4	153	35	14	23	26	1.93
40413470--40413809	44	7.7	44	70	8	183	29	16	26	27	1.97
40413479--40413882	222	1.8	222	82	4	519	30	17	26	26	1.97
40413869--40414331	44	10.4	45	70	13	228	30	19	21	28	1.98
40414139--40414297	87	1.8	87	87	5	241	29	20	21	28	1.98
40414751--40414806	19	2.8	19	83	5	58	17	3	3	75	1.10
40415353--40415439	15	6.0	14	78	12	70	26	8	1	64	1.28
40415325--40415461	29	4.6	28	74	18	93	27	8	2	62	1.34
40415386--40415431	15	2.9	15	93	6	74	26	8	0	65	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40415325--40415454	44	2.8	44	78	17	133	27	7	2	62	1.35
40415565--40415728	3	55.0	3	82	7	176	32	3	1	62	1.20
40417336--40417409	26	3.0	25	94	5	132	64	28	2	4	1.25
40418226--40418268	23	2.0	23	86	9	63	27	13	6	51	1.67
40418582--40418616	16	2.3	15	90	5	52	31	2	2	62	1.24
40430431--40431065	72	8.7	74	88	3	896	30	16	21	31	1.95
40430445--40431065	146	4.2	146	88	2	913	30	16	21	31	1.95
40431925--40431998	25	3.0	25	92	5	123	64	28	2	4	1.25
40432215--40432260	15	3.4	14	85	11	60	15	8	0	76	1.02
40432215--40432270	27	2.0	29	82	6	71	12	10	0	76	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295