Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  132  of  295  ( 35342 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40432828--40432870
23
2.0
23
86
9
63
27
13
6
51
1.67
40433183--40433217
16
2.3
15
90
5
52
31
2
2
62
1.24
40436717--40436765
25
2.0
25
100
0
98
48
20
10
20
1.78
40451534--40451954
75
5.8
72
86
4
592
30
16
19
32
1.94
40451534--40451954
147
2.9
145
89
3
605
30
16
19
32
1.94
40451533--40451954
220
1.9
218
94
1
738
30
16
19
32
1.94
40452823--40452898
25
3.0
25
84
3
107
67
26
2
3
1.22
40453135--40453159
13
1.9
13
100
0
50
12
0
0
88
0.53
40453123--40453170
15
3.1
15
80
11
53
10
6
0
83
0.81
40453450--40453505
24
2.3
24
81
6
69
32
3
5
58
1.37
40453723--40453765
23
2.0
23
86
9
63
27
13
6
51
1.67
40453894--40453936
20
2.1
21
86
4
61
27
0
6
65
1.18
40454075--40454109
16
2.3
15
90
5
52
31
2
2
62
1.24
40455936--40455972
18
2.1
17
90
5
56
67
10
0
21
1.21
40456105--40456134
7
4.3
7
91
0
51
43
0
3
53
1.17
40456096--40456139
14
2.8
17
74
22
51
50
0
2
47
1.13
40465815--40465858
9
4.9
9
86
8
63
77
4
0
18
0.94
40465815--40465868
16
3.1
17
86
7
65
77
5
0
16
0.94
40465976--40466024
3
16.7
3
76
19
50
0
32
0
67
0.91
40465977--40466028
12
4.5
12
76
16
56
0
30
0
69
0.89
40465977--40466032
17
3.1
17
82
17
60
0
30
0
69
0.89
40465976--40466065
21
4.3
21
88
1
137
2
31
0
66
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40465976--40466031
9
5.2
12
70
25
54
0
32
0
67
0.91
40466194--40466243
19
2.5
20
87
6
75
14
16
8
62
1.54
40467134--40467201
20
3.5
20
69
15
54
36
10
1
51
1.45
40468224--40468275
27
1.9
27
84
0
68
38
11
23
26
1.89
40469024--40469089
30
2.2
29
84
7
89
46
27
3
22
1.66
40471315--40471423
54
2.0
54
98
0
209
36
2
20
40
1.67
40471331--40471421
27
3.4
26
69
13
76
39
3
17
39
1.66
40471998--40472054
30
2.0
30
80
12
68
36
8
19
35
1.83
40472118--40472190
38
1.9
38
97
0
137
27
2
15
54
1.54
40472123--40472205
38
2.2
38
84
0
103
28
3
18
49
1.64
40473294--40473459
48
3.5
48
80
6
162
29
20
24
25
1.99
40473479--40473604
49
2.6
49
88
3
182
28
22
27
21
1.99
40480395--40481261
120
7.2
120
97
0
1540
44
2
5
48
1.37
40480970--40481004
18
2.0
17
88
5
52
45
0
0
54
0.99
40481090--40481124
18
2.0
17
88
5
52
45
0
0
54
0.99
40481210--40481244
18
2.0
17
88
5
52
45
0
0
54
0.99
40481409--40481499
45
2.0
45
85
2
121
37
28
6
27
1.82
40481480--40481548
16
4.2
16
96
3
129
37
37
0
24
1.56
40481480--40481548
33
2.1
32
97
2
129
37
37
0
24
1.56
40482353--40482381
12
2.4
12
100
0
58
31
0
51
17
1.45
40488836--40488887
5
10.2
5
78
19
54
38
15
23
23
1.92
40489398--40489456
15
4.0
15
80
4
66
42
0
23
33
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40495708--40495880
93
1.9
93
90
2
276
28
28
20
22
1.99
40495701--40495873
46
3.7
47
75
13
169
29
28
19
22
1.98
40500076--40500205
55
2.4
55
76
5
136
27
26
27
17
1.98
40510277--40510334
19
3.1
19
83
11
59
31
0
6
62
1.22
40510292--40510335
20
2.3
19
80
11
54
27
0
4
68
1.09
40510291--40510341
20
2.6
19
76
11
50
29
0
5
64
1.17
40514417--40514462
18
2.5
18
86
10
58
41
13
8
36
1.75
40521364--40521413
18
2.7
18
81
6
55
60
6
0
34
1.21
40521839--40521869
16
1.9
16
93
0
53
70
0
0
29
0.87
40523725--40523758
11
3.1
11
86
0
50
0
35
0
64
0.94
40531830--40531884
23
2.5
22
78
16
60
38
5
0
56
1.23
40537817--40537861
3
15.0
3
90
0
72
2
33
2
62
1.20
40542289--40542314
12
2.2
12
100
0
52
42
23
15
19
1.89
40549690--40549723
16
2.1
17
88
5
52
52
0
5
41
1.25
40550680--40550817
40
3.5
40
72
10
124
28
16
23
31
1.96
40554349--40554435
43
2.0
43
90
0
138
22
24
2
50
1.61
40564726--40564764
20
2.0
20
90
5
62
64
5
2
28
1.28
40569179--40569215
19
1.9
19
88
0
56
51
0
0
48
1.00
40572606--40572678
7
10.4
7
80
5
67
43
1
24
30
1.63
40573119--40573301
65
2.8
65
83
1
224
39
2
6
51
1.42
40573267--40573305
19
2.0
20
85
9
55
43
2
5
48
1.38
40575216--40575520
160
1.9
159
87
4
452
28
15
8
47
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40576634--40576678
17
2.6
17
89
0
72
51
4
13
31
1.61
40578214--40578670
188
2.4
187
80
2
504
29
19
16
35
1.93
40578241--40578839
94
6.4
94
74
3
337
29
19
16
34
1.94
40578801--40579003
94
2.2
94
87
1
291
30
24
15
29
1.96
40578812--40578973
44
3.5
44
70
17
123
30
24
16
27
1.97
40581169--40581205
19
1.9
19
88
0
56
29
10
13
45
1.77
40582548--40582620
38
1.9
38
83
5
94
28
28
21
20
1.98
40583705--40583738
17
2.1
17
88
5
52
2
26
0
70
1.01
40587499--40587527
6
4.8
6
100
0
58
34
17
13
34
1.89
40587545--40587621
24
3.2
24
80
7
68
12
41
7
37
1.73
40590064--40590097
17
1.9
18
88
5
52
41
0
8
50
1.34
40590468--40590517
21
2.4
21
82
0
55
18
26
18
38
1.93
40593856--40593896
21
2.0
21
90
4
66
41
9
9
39
1.71
40594161--40594195
17
2.1
17
89
5
54
65
0
0
34
0.93
40594583--40594631
8
6.1
8
83
7
64
57
0
2
40
1.10
40597122--40597156
16
2.1
18
89
10
56
45
2
17
34
1.63
40598733--40598793
20
3.0
20
100
0
122
19
39
29
11
1.87
40600548--40600594
17
2.8
17
86
0
67
51
0
0
48
1.00
40600554--40600605
28
1.9
26
84
7
68
53
1
0
44
1.11
40602695--40602734
21
2.0
20
85
5
53
45
2
5
47
1.38
40605184--40605254
36
2.0
36
97
0
133
38
23
8
29
1.85
40613549--40613590
21
2.0
22
85
4
59
64
4
0
30
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40617336--40617370
6
5.8
6
93
0
61
17
34
0
48
1.47
40617516--40617569
26
2.1
26
86
6
74
40
5
1
51
1.36
40622788--40622848
3
20.7
3
83
3
79
65
0
34
0
0.93
40623913--40623937
9
2.8
9
100
0
50
12
12
56
20
1.67
40624337--40624451
16
7.4
16
72
14
98
37
6
26
29
1.82
40624333--40624452
60
2.0
60
96
0
222
36
8
25
30
1.85
40624597--40624647
25
2.0
25
82
17
61
39
0
7
52
1.30
40624687--40624745
20
2.8
21
79
10
75
52
1
0
45
1.10
40624649--40624769
57
2.2
54
78
11
127
53
2
0
43
1.14
40624721--40624766
24
1.9
24
86
8
67
47
2
0
50
1.13
40627206--40627286
40
2.0
40
100
0
162
37
14
14
33
1.88
40628900--40628967
34
2.0
34
91
2
111
42
17
16
23
1.88
40634502--40634546
22
2.0
22
86
4
63
31
0
11
57
1.33
40634510--40634574
22
3.0
21
82
13
80
24
0
9
66
1.21
40634766--40634803
20
1.9
20
88
0
58
34
10
0
55
1.34
40638307--40638346
2
20.0
2
100
0
80
50
0
0
50
1.00
40638541--40638583
22
2.0
22
90
0
68
41
0
4
53
1.21
40639093--40639198
41
2.6
41
76
15
112
33
15
20
31
1.93
40639614--40639761
7
20.7
7
78
4
80
52
27
0
19
1.51
40639616--40639755
22
6.5
21
74
12
106
52
27
0
19
1.51
40639615--40639740
7
17.7
7
78
15
98
53
26
0
19
1.51
40640160--40640238
41
1.9
41
82
10
99
29
17
24
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40640230--40640751
116
4.5
117
86
2
665
29
15
19
35
1.92
40640230--40640749
233
2.2
232
85
2
695
30
15
19
35
1.92
40644229--40644352
43
2.9
43
78
1
133
31
22
15
30
1.95
40653312--40653347
17
2.1
18
89
5
56
47
5
5
41
1.50
40653380--40653404
6
4.2
6
100
0
50
48
0
16
36
1.46
40666260--40666285
13
2.0
13
100
0
52
46
23
0
30
1.53
40675254--40675300
14
3.4
14
80
16
53
78
4
12
4
1.04
40684157--40684227
36
2.0
35
89
5
108
49
16
4
29
1.65
40684215--40684267
22
2.4
22
87
6
72
45
13
9
32
1.75
40684624--40684661
15
2.4
16
82
4
51
36
0
0
63
0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295