genome.fa.s7.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Length:  93829987

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  191  of  295  ( 35342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60700759--60700898	68	2.0	71	83	8	180	22	20	20	36	1.95
60702379--60702423	18	2.5	18	85	7	65	13	40	2	44	1.56
60704847--60705024	27	6.6	27	84	3	205	29	28	15	26	1.96
60704868--60705023	82	1.9	81	88	3	233	29	28	15	26	1.96
60707099--60707261	47	3.5	47	75	5	195	30	30	18	21	1.97
60707052--60707316	93	2.8	93	91	0	431	29	29	19	21	1.98
60707045--60707313	46	5.8	46	74	8	231	29	29	19	21	1.98
60708204--60708246	21	2.0	21	100	0	86	37	4	34	23	1.76
60717405--60717450	18	2.6	18	80	13	60	36	0	0	63	0.95
60717746--60717770	13	1.9	13	100	0	50	68	0	32	0	0.90
60717943--60718061	60	2.0	60	91	0	193	33	0	12	53	1.39
60720147--60720209	33	1.9	33	87	6	92	17	49	9	23	1.76
60720424--60720463	20	1.9	21	90	10	64	27	5	10	57	1.52
60720399--60720540	76	1.9	76	82	8	182	26	4	12	55	1.57
60721287--60721319	16	2.1	16	100	0	66	36	12	33	18	1.88
60723193--60723269	27	2.9	27	86	0	73	25	22	25	25	2.00
60723209--60723269	27	2.3	27	94	0	104	27	19	27	24	1.99
60727844--60727882	21	1.9	21	89	5	62	58	0	0	41	0.98
60727843--60727888	20	2.3	20	81	7	58	63	0	0	36	0.95
60728006--60728037	15	2.1	15	100	0	64	6	12	25	56	1.59
60731064--60731110	21	2.2	22	92	3	78	21	38	19	21	1.94
60744830--60744894	24	2.7	22	78	19	60	6	16	3	73	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60753265--60753399	51	2.6	52	78	6	150	27	25	16	30	1.97
60760310--60760666	48	7.4	48	96	0	624	33	7	28	29	1.85
60760839--60760978	37	3.8	37	95	0	244	23	19	31	25	1.98
60763504--60763594	45	2.0	45	89	0	137	26	13	25	35	1.92
60780106--60780153	22	2.2	22	96	0	87	14	33	31	20	1.93
60786633--60786723	40	2.3	40	92	3	148	24	19	27	28	1.99
60788916--60788958	21	2.1	21	86	4	61	48	23	2	25	1.62
60803981--60804026	24	1.9	24	82	8	58	10	23	15	50	1.75
60809018--60809195	27	6.6	27	83	3	205	26	15	28	29	1.96
60809019--60809174	82	1.9	81	88	3	233	26	15	28	29	1.96
60809015--60809195	82	2.2	81	83	2	229	27	15	27	29	1.96
60817201--60817378	27	6.6	27	83	3	205	26	15	28	29	1.96
60817202--60817357	82	1.9	81	88	3	233	26	15	28	29	1.96
60817198--60817378	82	2.2	81	83	2	229	27	15	27	29	1.96
60822467--60822491	12	2.1	12	100	0	50	36	16	16	32	1.90
60827354--60827526	46	3.7	46	73	15	167	23	21	26	28	1.99
60827351--60827521	93	1.8	93	92	0	288	23	21	26	28	1.99
60828389--60828424	19	1.9	19	88	5	56	66	0	0	33	0.92
60836068--60836291	79	2.8	80	86	7	280	25	21	27	25	1.99
60836068--60836291	40	5.7	40	84	6	280	25	21	27	25	1.99
60836120--60836314	80	2.5	79	85	6	227	26	21	27	25	1.99
60843806--60844109	40	7.7	40	88	4	413	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60849120--60849165	24	1.9	24	86	8	67	10	21	17	50	1.77
60852128--60852180	27	2.0	27	84	0	70	37	18	15	28	1.91
60855435--60855491	28	2.1	28	93	3	98	21	24	21	33	1.97
60858478--60858629	43	3.5	42	73	9	112	36	13	21	28	1.91
60866422--60866823	46	8.5	46	73	13	222	27	19	29	23	1.98
60866519--60866689	48	3.7	43	82	11	173	26	19	29	23	1.98
60866654--60866830	96	1.8	96	85	8	250	25	18	31	24	1.97
60870408--60870456	10	4.9	10	75	9	55	34	16	12	36	1.86
60870409--60870479	30	2.4	31	88	4	101	38	15	15	30	1.89
60878249--60878306	30	1.9	30	82	3	71	31	24	8	36	1.85
60895299--60895328	9	3.3	9	90	0	51	73	0	23	3	0.98
60898415--60898532	51	2.4	50	79	12	118	33	11	11	44	1.76
60902363--60902533	93	1.8	93	94	0	306	28	29	21	21	1.98
60902358--60902530	46	3.7	46	78	10	199	29	28	20	21	1.98
60903726--60903755	11	2.7	11	94	0	51	60	3	0	36	1.14
60909939--60910109	93	1.8	93	84	0	234	28	26	21	23	1.99
60915847--60916031	40	4.7	40	82	6	216	24	27	22	25	2.00
60915847--60916031	79	2.3	82	82	7	220	24	27	22	25	2.00
60923815--60923999	40	4.7	40	80	6	207	24	26	23	25	2.00
60923815--60923999	79	2.3	81	83	7	227	24	26	23	25	2.00
60925324--60925499	46	3.8	46	75	7	185	22	19	28	29	1.98
60925320--60925491	93	1.8	93	91	0	281	22	20	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60930782--60930951	46	3.7	46	74	13	168	21	20	28	29	1.98
60930779--60930949	93	1.8	93	89	0	270	21	20	28	29	1.98
60935126--60935203	15	5.2	15	75	9	70	15	17	12	53	1.72
60935135--60935214	15	5.4	15	76	10	76	12	16	12	58	1.63
60936789--60936846	27	2.2	26	81	3	62	36	20	22	20	1.95
60936849--60937024	67	2.6	67	90	0	280	31	21	27	19	1.98
60938631--60938731	40	2.5	40	95	0	175	25	27	22	23	2.00
60958504--60958641	40	3.5	40	92	3	208	23	28	23	24	2.00
60966542--60966642	27	3.8	27	87	6	143	38	20	23	16	1.93
60968036--60968136	24	4.2	23	90	6	148	20	39	3	35	1.72
60974375--60974486	27	4.2	27	87	5	147	38	21	23	16	1.93
60975847--60975947	24	4.2	24	89	0	148	20	35	4	38	1.75
60978373--60978502	65	2.0	65	96	3	244	26	16	26	30	1.97
60989455--60989582	51	2.5	51	98	0	247	24	20	24	31	1.98
60989453--60989636	51	3.7	50	88	4	230	24	19	25	30	1.98
60989455--60989636	100	1.8	101	83	7	244	24	19	25	31	1.98
60996761--60996935	46	3.8	45	79	7	199	28	29	20	21	1.98
60996769--60996939	93	1.8	93	93	0	297	28	29	21	21	1.98
60999503--60999581	29	2.7	29	86	5	106	27	32	15	24	1.95
61000025--61000050	12	2.2	12	100	0	52	42	0	7	50	1.31
61003158--61003343	50	3.7	49	79	8	205	26	18	25	29	1.98
61009008--61009071	31	2.1	31	93	0	110	23	23	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61009279--61009385	24	4.4	24	83	6	137	30	21	16	30	1.96
61009279--61009385	49	2.2	47	86	5	151	30	21	16	30	1.96
61009442--61009494	9	5.4	9	75	16	52	37	20	7	33	1.81
61009434--61009500	20	3.3	20	89	0	107	34	20	10	34	1.87
61009446--61009489	15	2.9	15	81	18	56	34	20	9	36	1.84
61009537--61009584	25	1.9	25	86	0	69	25	16	25	33	1.96
61019159--61019189	16	1.9	16	93	0	53	51	12	3	32	1.56
61020690--61020732	22	2.0	22	86	9	61	69	6	6	16	1.32
61025458--61025630	46	3.7	46	76	13	183	21	19	28	29	1.98
61025452--61025621	93	1.8	93	93	0	295	22	20	28	28	1.99
61034918--61035025	29	3.8	29	80	6	121	29	28	15	25	1.96
61039550--61039623	29	2.5	30	84	6	98	28	22	20	28	1.99
61039850--61039900	24	2.1	24	89	7	77	19	21	9	49	1.77
61049446--61049481	18	1.9	19	94	5	65	19	8	5	66	1.38
61051865--61051935	23	3.1	23	67	17	67	39	8	25	26	1.84
61051842--61051932	45	2.0	44	95	2	164	41	6	24	27	1.79
61052442--61052485	18	2.4	18	96	0	79	18	29	27	25	1.98
61054323--61055496	47	24.6	47	89	5	1598	27	29	9	33	1.89
61054323--61055496	190	6.1	189	90	4	1629	27	29	9	33	1.89
61054323--61055496	237	4.9	237	92	2	1795	27	29	9	33	1.89
61055084--61055159	25	3.2	25	62	24	63	23	26	11	38	1.89
61056944--61057063	56	2.1	56	98	0	231	22	23	9	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61057994--61058029	18	2.0	18	100	0	72	55	11	22	11	1.66
61062979--61063057	37	2.1	37	90	0	122	25	31	18	24	1.98
61063098--61063322	47	4.7	47	88	3	308	28	30	8	32	1.87
61063098--61063322	96	2.4	94	87	3	317	28	30	8	32	1.87
61066893--61067442	40	13.8	40	91	0	823	27	28	20	24	1.99
61068661--61068738	37	2.1	38	87	2	113	26	29	17	25	1.98
61068855--61069126	47	5.7	47	90	2	393	27	30	8	33	1.87
61074084--61074259	46	3.8	47	76	16	197	21	20	28	28	1.98
61074081--61074251	93	1.8	93	94	2	308	21	21	29	28	1.98
61077347--61077552	45	4.6	45	85	2	265	29	30	18	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295